Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 FUK-202ENST00000378912 3925 ntTSL 2 BASIC16.64■□□□□ 0.25
HLA-DOAP06340 AC021305.1-201ENST00000520656 1514 ntBASIC16.64■□□□□ 0.25
HLA-DOAP06340 C12orf65-204ENST00000429587 1326 ntAPPRIS P2 TSL 2 BASIC16.64■□□□□ 0.25
HLA-DOAP06340 DACT3-AS1-201ENST00000500689 1304 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
HLA-DOAP06340 CSAD-203ENST00000379846 1962 ntTSL 5 BASIC16.64■□□□□ 0.25
HLA-DOAP06340 MAGEA4-202ENST00000360243 1773 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
HLA-DOAP06340 MAGEA4-203ENST00000370335 1773 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
HLA-DOAP06340 MAGEA4-204ENST00000370340 1773 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
HLA-DOAP06340 NWD2-201ENST00000309447 8325 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
HLA-DOAP06340 ZFP41-203ENST00000520584 3284 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
HLA-DOAP06340 CDH23-202ENST00000299366 3954 ntTSL 5 BASIC16.63■□□□□ 0.25
HLA-DOAP06340 JMJD6-208ENST00000617192 5517 ntTSL 5 BASIC16.63■□□□□ 0.25
HLA-DOAP06340 KCNIP1-210ENST00000636734 1613 ntTSL 5 BASIC16.63■□□□□ 0.25
HLA-DOAP06340 RRM1-214ENST00000534285 2075 ntTSL 5 BASIC16.63■□□□□ 0.25
HLA-DOAP06340 LIPE-AS1-204ENST00000594624 1448 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
HLA-DOAP06340 C15orf52-202ENST00000397536 4717 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
HLA-DOAP06340 LINC02228-204ENST00000642115 2962 ntBASIC16.63■□□□□ 0.25
HLA-DOAP06340 DSG1-202ENST00000462981 1857 ntTSL 2 BASIC16.63■□□□□ 0.25
HLA-DOAP06340 SAP130-201ENST00000259234 4140 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
HLA-DOAP06340 PI4K2A-201ENST00000370631 4189 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
HLA-DOAP06340 ZFP64-201ENST00000216923 3264 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
HLA-DOAP06340 SIGLEC5-201ENST00000534261 2360 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
HLA-DOAP06340 RHD-209ENST00000568195 1467 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
HLA-DOAP06340 PDPK1-201ENST00000268673 4728 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
HLA-DOAP06340 ZNF451-201ENST00000357489 4998 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
HLA-DOAP06340 DERL3-202ENST00000318109 860 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
HLA-DOAP06340 TMEM176B-201ENST00000326442 1129 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
HLA-DOAP06340 GULP1-204ENST00000409637 1242 ntTSL 2 BASIC16.63■□□□□ 0.25
HLA-DOAP06340 AL627389.1-201ENST00000413508 1182 ntBASIC16.63■□□□□ 0.25
HLA-DOAP06340 FTCDNL1-203ENST00000420922 772 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
HLA-DOAP06340 LINC00028-201ENST00000435497 587 ntTSL 2 BASIC16.63■□□□□ 0.25
HLA-DOAP06340 AL008733.1-201ENST00000440516 469 ntTSL 3 BASIC16.63■□□□□ 0.25
HLA-DOAP06340 ZAP70-202ENST00000451498 1085 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
HLA-DOAP06340 FAHD2CP-203ENST00000467292 965 ntTSL 2 BASIC16.63■□□□□ 0.25
HLA-DOAP06340 LAMTOR4-209ENST00000488241 613 ntTSL 2 BASIC16.63■□□□□ 0.25
HLA-DOAP06340 COQ10BP2-201ENST00000513804 724 ntBASIC16.63■□□□□ 0.25
HLA-DOAP06340 MIR4472-1-201ENST00000584349 80 ntBASIC16.63■□□□□ 0.25
HLA-DOAP06340 ZNF677-204ENST00000594681 935 ntTSL 2 BASIC16.63■□□□□ 0.25
HLA-DOAP06340 TTC29-208ENST00000513335 2226 ntAPPRIS ALT2 TSL 2 BASIC16.63■□□□□ 0.25
HLA-DOAP06340 KIF7-201ENST00000394412 4551 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
HLA-DOAP06340 LTB4R-203ENST00000396789 4110 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
HLA-DOAP06340 AC093797.1-201ENST00000411847 1789 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
HLA-DOAP06340 USP19-203ENST00000398892 4622 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
HLA-DOAP06340 RNPS1-216ENST00000565678 2298 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
HLA-DOAP06340 CNOT3-204ENST00000447684 2765 ntTSL 2 BASIC16.63■□□□□ 0.25
HLA-DOAP06340 TJP3-207ENST00000589378 3068 ntAPPRIS ALT2 TSL 2 BASIC16.63■□□□□ 0.25
HLA-DOAP06340 FRMD5-201ENST00000402883 4091 ntTSL 5 BASIC16.63■□□□□ 0.25
HLA-DOAP06340 PDHX-201ENST00000227868 2389 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
HLA-DOAP06340 PRSS8-201ENST00000317508 1872 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
HLA-DOAP06340 COG8-206ENST00000306875 4247 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
HLA-DOAP06340 ABAT-215ENST00000569156 1911 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
HLA-DOAP06340 C2-205ENST00000418949 1658 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
HLA-DOAP06340 ACTL8-202ENST00000617065 1670 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
HLA-DOAP06340 GSTM4-204ENST00000369836 1412 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
HLA-DOAP06340 SLC47A1-206ENST00000571335 1415 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
HLA-DOAP06340 KRT20-201ENST00000167588 1737 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
HLA-DOAP06340 GGT1-202ENST00000400380 2540 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
HLA-DOAP06340 TTC22-202ENST00000371276 3345 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
HLA-DOAP06340 GALNT16-202ENST00000448469 2270 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
HLA-DOAP06340 MAPK12-203ENST00000395780 1459 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
HLA-DOAP06340 TMCO3-207ENST00000474393 2843 ntTSL 2 BASIC16.62■□□□□ 0.25
HLA-DOAP06340 LINC00552-201ENST00000625151 2579 ntBASIC16.62■□□□□ 0.25
HLA-DOAP06340 FANCG-201ENST00000378643 2631 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
HLA-DOAP06340 ACSL1-201ENST00000281455 3832 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
HLA-DOAP06340 TMEM95-201ENST00000330767 1169 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
HLA-DOAP06340 TPM3-211ENST00000368531 1115 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
HLA-DOAP06340 MDS2-201ENST00000374555 1029 ntAPPRIS P5 TSL 1 (best) BASIC16.62■□□□□ 0.25
HLA-DOAP06340 RPL3P2-204ENST00000413027 1203 ntBASIC16.62■□□□□ 0.25
HLA-DOAP06340 AC006450.3-201ENST00000453529 2146 ntTSL 2 BASIC16.62■□□□□ 0.25
HLA-DOAP06340 MUTYH-231ENST00000488731 740 ntTSL 5 BASIC16.62■□□□□ 0.25
HLA-DOAP06340 AREG-202ENST00000502307 956 ntTSL 5 BASIC16.62■□□□□ 0.25
HLA-DOAP06340 ALG1L6P-201ENST00000515248 758 ntBASIC16.62■□□□□ 0.25
HLA-DOAP06340 GSTZ1-210ENST00000554279 795 ntTSL 2 BASIC16.62■□□□□ 0.25
HLA-DOAP06340 MIR5196-201ENST00000578146 115 ntBASIC16.62■□□□□ 0.25
HLA-DOAP06340 AC011462.2-201ENST00000598887 344 ntTSL 5 BASIC16.62■□□□□ 0.25
HLA-DOAP06340 CR589904.1-202ENST00000611154 660 ntTSL 5 BASIC16.62■□□□□ 0.25
HLA-DOAP06340 NOP16-211ENST00000621444 954 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
HLA-DOAP06340 TREX1-206ENST00000629913 945 ntAPPRIS P1 BASIC16.62■□□□□ 0.25
HLA-DOAP06340 CD93-201ENST00000246006 6708 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
HLA-DOAP06340 STAT5A-211ENST00000590949 3318 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
HLA-DOAP06340 CTBP2P8-201ENST00000422584 1330 ntBASIC16.62■□□□□ 0.25
HLA-DOAP06340 TGOLN2-204ENST00000409015 2276 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
HLA-DOAP06340 MTA3-203ENST00000406652 5484 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
HLA-DOAP06340 YPEL4-201ENST00000300022 1721 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
HLA-DOAP06340 TP53INP2-201ENST00000374809 4018 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
HLA-DOAP06340 AL354813.1-201ENST00000526566 2437 ntTSL 5 BASIC16.61■□□□□ 0.25
HLA-DOAP06340 ZNF18-201ENST00000322748 2767 ntAPPRIS P3 TSL 2 BASIC16.61■□□□□ 0.25
HLA-DOAP06340 BCKDHA-201ENST00000269980 2103 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
HLA-DOAP06340 ATP8B3-201ENST00000310127 5095 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
HLA-DOAP06340 AC025183.3-201ENST00000623526 1482 ntBASIC16.61■□□□□ 0.25
HLA-DOAP06340 POM121-203ENST00000434423 3750 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
HLA-DOAP06340 CCDC50-201ENST00000392455 8429 ntAPPRIS ALT1 TSL 1 (best) BASIC16.61■□□□□ 0.25
HLA-DOAP06340 ZBED1-201ENST00000381218 2832 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
HLA-DOAP06340 ZNF628-203ENST00000598519 3847 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
HLA-DOAP06340 OSBPL1A-201ENST00000319481 4195 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
HLA-DOAP06340 SNX19-201ENST00000265909 6535 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
HLA-DOAP06340 CDR2L-201ENST00000337231 3536 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
HLA-DOAP06340 CDCA7-202ENST00000347703 2500 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
HLA-DOAP06340 AIFM2-204ENST00000613322 3247 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
HLA-DOAP06340 ADORA2A-AS1-201ENST00000326341 2557 ntTSL 5 BASIC16.61■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 37 ms