Protein–RNA interactions for Protein: Q96S21

RAB40C, Ras-related protein Rab-40C, humanhuman

Predictions only

Length 281 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAB40CQ96S21 APBB3-205ENST00000412920 1455 ntAPPRIS ALT1 TSL 1 (best) BASIC11.6□□□□□ -0.55
RAB40CQ96S21 PLA1A-204ENST00000488919 1456 ntTSL 2 BASIC11.6□□□□□ -0.55
RAB40CQ96S21 AC061965.1-201ENST00000560524 1465 ntBASIC11.6□□□□□ -0.55
RAB40CQ96S21 RPS5-201ENST00000196551 740 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
RAB40CQ96S21 EIF5A-201ENST00000336452 1256 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
RAB40CQ96S21 KCNK7-201ENST00000340313 1298 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
RAB40CQ96S21 NECTIN1-202ENST00000340882 1059 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
RAB40CQ96S21 CTRB1-201ENST00000361017 858 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
RAB40CQ96S21 WDR45-208ENST00000396681 1146 ntTSL 5 BASIC11.6□□□□□ -0.55
RAB40CQ96S21 ATP6V1E1-202ENST00000399796 1208 ntTSL 2 BASIC11.6□□□□□ -0.55
RAB40CQ96S21 MRPS18AP1-201ENST00000414458 589 ntBASIC11.6□□□□□ -0.55
RAB40CQ96S21 GAS5-209ENST00000430245 723 ntTSL 3 BASIC11.6□□□□□ -0.55
RAB40CQ96S21 AL035414.1-201ENST00000451327 857 ntBASIC11.6□□□□□ -0.55
RAB40CQ96S21 AL627443.1-201ENST00000456477 1035 ntTSL 3 BASIC11.6□□□□□ -0.55
RAB40CQ96S21 AC097717.1-202ENST00000457577 740 ntTSL 3 BASIC11.6□□□□□ -0.55
RAB40CQ96S21 AL606760.1-201ENST00000458151 1181 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
RAB40CQ96S21 AJ271736.1-201ENST00000483543 773 ntTSL 5 BASIC11.6□□□□□ -0.55
RAB40CQ96S21 DOC2GP-202ENST00000514950 1163 ntBASIC11.6□□□□□ -0.55
RAB40CQ96S21 AC064807.1-203ENST00000520357 575 ntTSL 5 BASIC11.6□□□□□ -0.55
RAB40CQ96S21 PLEKHB1-206ENST00000535129 1049 ntAPPRIS ALT1 TSL 2 BASIC11.6□□□□□ -0.55
RAB40CQ96S21 NAA60-208ENST00000570819 833 ntTSL 2 BASIC11.6□□□□□ -0.55
RAB40CQ96S21 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
RAB40CQ96S21 RPL36-203ENST00000577222 874 ntAPPRIS P1 TSL 5 BASIC11.6□□□□□ -0.55
RAB40CQ96S21 KSR1-207ENST00000578981 748 ntTSL 4 BASIC11.6□□□□□ -0.55
RAB40CQ96S21 LAMTOR5-AS1-209ENST00000597455 805 ntBASIC11.6□□□□□ -0.55
RAB40CQ96S21 AC011491.2-201ENST00000599584 447 ntTSL 5 BASIC11.6□□□□□ -0.55
RAB40CQ96S21 AC008761.3-201ENST00000624803 892 ntBASIC11.6□□□□□ -0.55
RAB40CQ96S21 LINC00567-201ENST00000569854 3409 ntBASIC11.6□□□□□ -0.55
RAB40CQ96S21 KLHL13-209ENST00000545703 3322 ntAPPRIS ALT1 TSL 1 (best) BASIC11.6□□□□□ -0.55
RAB40CQ96S21 UNC5CL-201ENST00000244565 3136 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
RAB40CQ96S21 PER3-208ENST00000613533 6318 ntAPPRIS ALT2 TSL 5 BASIC11.6□□□□□ -0.55
RAB40CQ96S21 COL6A3-203ENST00000353578 9963 ntTSL 5 BASIC11.6□□□□□ -0.55
RAB40CQ96S21 AP001999.1-201ENST00000513405 3684 ntTSL 2 BASIC11.6□□□□□ -0.55
RAB40CQ96S21 AC004623.1-201ENST00000624592 2127 ntBASIC11.6□□□□□ -0.55
RAB40CQ96S21 FIBCD1-202ENST00000372338 3253 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
RAB40CQ96S21 UBE3A-226ENST00000637886 8725 ntAPPRIS ALT1 TSL 5 BASIC11.6□□□□□ -0.55
RAB40CQ96S21 CENPK-202ENST00000396679 1734 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
RAB40CQ96S21 ASAP3-202ENST00000437606 2865 ntAPPRIS ALT2 TSL 2 BASIC11.6□□□□□ -0.55
RAB40CQ96S21 CRHR2-202ENST00000348438 1600 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
RAB40CQ96S21 CCDC110-209ENST00000510617 2592 ntAPPRIS ALT2 TSL 5 BASIC11.6□□□□□ -0.55
RAB40CQ96S21 DLGAP1-201ENST00000315677 6683 ntAPPRIS P1 TSL 5 BASIC11.6□□□□□ -0.55
RAB40CQ96S21 COL2A1-201ENST00000337299 4257 ntAPPRIS P3 TSL 1 (best) BASIC11.6□□□□□ -0.55
RAB40CQ96S21 TCF7-218ENST00000520958 1408 ntTSL 2 BASIC11.6□□□□□ -0.55
RAB40CQ96S21 AP000593.2-201ENST00000542775 1433 ntBASIC11.6□□□□□ -0.55
RAB40CQ96S21 ACY3-201ENST00000255082 1300 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
RAB40CQ96S21 ENG-202ENST00000373203 3048 ntAPPRIS ALT2 TSL 1 (best) BASIC11.6□□□□□ -0.55
RAB40CQ96S21 SRPRB-201ENST00000466490 2827 ntAPPRIS P1 TSL 5 BASIC11.59□□□□□ -0.55
RAB40CQ96S21 USH1G-202ENST00000614341 3558 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
RAB40CQ96S21 PTH2R-201ENST00000272847 2713 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
RAB40CQ96S21 PRMT7-201ENST00000339507 4238 ntAPPRIS P1 TSL 2 BASIC11.59□□□□□ -0.55
RAB40CQ96S21 TRIM4-203ENST00000355947 3383 ntAPPRIS P4 TSL 1 (best) BASIC11.59□□□□□ -0.55
RAB40CQ96S21 G6PD-201ENST00000369620 1799 ntTSL 5 BASIC11.59□□□□□ -0.55
RAB40CQ96S21 LINC01671-201ENST00000419628 1775 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
RAB40CQ96S21 CCT6P3-201ENST00000419314 3702 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
RAB40CQ96S21 CDC20B-202ENST00000322374 1679 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
RAB40CQ96S21 DPEP2-202ENST00000393847 1697 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
RAB40CQ96S21 PRKAB1-205ENST00000540121 1673 ntTSL 5 BASIC11.59□□□□□ -0.55
RAB40CQ96S21 PRR12-201ENST00000418929 6955 ntAPPRIS P2 TSL 5 BASIC11.59□□□□□ -0.55
RAB40CQ96S21 BRSK2-207ENST00000528710 3528 ntTSL 2 BASIC11.59□□□□□ -0.55
RAB40CQ96S21 LINC00887-202ENST00000414120 2880 ntTSL 3 BASIC11.59□□□□□ -0.55
RAB40CQ96S21 AC000120.1-201ENST00000414227 1589 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
RAB40CQ96S21 TOLLIP-203ENST00000525159 3429 ntTSL 2 BASIC11.59□□□□□ -0.55
RAB40CQ96S21 DHX30-201ENST00000348968 3994 ntTSL 5 BASIC11.59□□□□□ -0.55
RAB40CQ96S21 PIK3CG-205ENST00000496166 5197 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
RAB40CQ96S21 COPS7B-203ENST00000373608 2563 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
RAB40CQ96S21 DYSF-202ENST00000394120 6543 ntAPPRIS ALT2 TSL 1 (best) BASIC11.59□□□□□ -0.55
RAB40CQ96S21 ZNF286B-205ENST00000545289 5328 ntAPPRIS P1 TSL 5 BASIC11.59□□□□□ -0.55
RAB40CQ96S21 GHET1-201ENST00000627071 1906 ntBASIC11.59□□□□□ -0.55
RAB40CQ96S21 EIF4G1-205ENST00000382330 5129 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
RAB40CQ96S21 ST3GAL2-202ENST00000393640 8872 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
RAB40CQ96S21 TSFM-201ENST00000323833 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC11.59□□□□□ -0.55
RAB40CQ96S21 CKS1B-202ENST00000368436 820 ntTSL 2 BASIC11.59□□□□□ -0.55
RAB40CQ96S21 CALY-202ENST00000368555 783 ntTSL 2 BASIC11.59□□□□□ -0.55
RAB40CQ96S21 PEX13-202ENST00000401576 1108 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
RAB40CQ96S21 AC073133.1-201ENST00000426187 432 ntTSL 3 BASIC11.59□□□□□ -0.55
RAB40CQ96S21 ITGA9-AS1-209ENST00000450990 562 ntTSL 4 BASIC11.59□□□□□ -0.55
RAB40CQ96S21 FBXO4-206ENST00000509134 1284 ntTSL 5 BASIC11.59□□□□□ -0.55
RAB40CQ96S21 AC009902.2-201ENST00000518880 620 ntTSL 4 BASIC11.59□□□□□ -0.55
RAB40CQ96S21 CATSPERZ-203ENST00000539943 917 ntAPPRIS ALT2 TSL 2 BASIC11.59□□□□□ -0.55
RAB40CQ96S21 AL132639.3-201ENST00000556537 530 ntTSL 4 BASIC11.59□□□□□ -0.55
RAB40CQ96S21 LINC02285-201ENST00000557121 943 ntTSL 2 BASIC11.59□□□□□ -0.55
RAB40CQ96S21 AC104794.3-201ENST00000566840 1248 ntBASIC11.59□□□□□ -0.55
RAB40CQ96S21 INO80C-206ENST00000586489 594 ntTSL 3 BASIC11.59□□□□□ -0.55
RAB40CQ96S21 RNA5-8SN1-201ENST00000610460 153 ntBASIC11.59□□□□□ -0.55
RAB40CQ96S21 RNA5-8SN5-202ENST00000612463 153 ntBASIC11.59□□□□□ -0.55
RAB40CQ96S21 RNA5-8SN4-201ENST00000613359 153 ntBASIC11.59□□□□□ -0.55
RAB40CQ96S21 NDUFS7-218ENST00000618074 688 ntTSL 5 BASIC11.59□□□□□ -0.55
RAB40CQ96S21 NOP16-209ENST00000618911 1087 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
RAB40CQ96S21 RNA5-8SN5-201ENST00000619471 153 ntBASIC11.59□□□□□ -0.55
RAB40CQ96S21 NDUFS7-219ENST00000620479 754 ntTSL 5 BASIC11.59□□□□□ -0.55
RAB40CQ96S21 CD300LB-202ENST00000392621 2286 ntAPPRIS P2 TSL 1 (best) BASIC11.59□□□□□ -0.55
RAB40CQ96S21 PCDHA6-201ENST00000378126 3267 ntBASIC11.59□□□□□ -0.55
RAB40CQ96S21 COL18A1-AS1-201ENST00000397787 3425 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
RAB40CQ96S21 BAIAP3-203ENST00000421665 3875 ntTSL 2 BASIC11.59□□□□□ -0.55
RAB40CQ96S21 EPN2-205ENST00000395626 2863 ntTSL 2 BASIC11.59□□□□□ -0.55
RAB40CQ96S21 PAM-207ENST00000455264 2898 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
RAB40CQ96S21 DYRK1B-202ENST00000348817 2448 ntTSL 5 BASIC11.59□□□□□ -0.55
RAB40CQ96S21 FGGY-201ENST00000303721 1976 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
RAB40CQ96S21 LOXHD1-203ENST00000398686 1958 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
RAB40CQ96S21 IFT172-203ENST00000416524 1982 ntTSL 2 BASIC11.59□□□□□ -0.55
Retrieved 100 of 98,524 protein–RNA pairs in 56.5 ms