Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 SLC39A11-202ENST00000542342 2752 ntAPPRIS ALT1 TSL 2 BASIC8.75□□□□□ -1.01
LINC00643Q86TS7 GPSM3-207ENST00000375043 1456 ntAPPRIS P1 TSL 1 (best) BASIC8.75□□□□□ -1.01
LINC00643Q86TS7 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC8.75□□□□□ -1.01
LINC00643Q86TS7 AC025183.3-201ENST00000623526 1482 ntBASIC8.75□□□□□ -1.01
LINC00643Q86TS7 UROC1-201ENST00000290868 3149 ntAPPRIS P1 TSL 1 (best) BASIC8.75□□□□□ -1.01
LINC00643Q86TS7 WDR70-201ENST00000265107 2983 ntAPPRIS P1 TSL 1 (best) BASIC8.75□□□□□ -1.01
LINC00643Q86TS7 PPARD-204ENST00000418635 3453 ntTSL 2 BASIC8.75□□□□□ -1.01
LINC00643Q86TS7 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC8.75□□□□□ -1.01
LINC00643Q86TS7 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC8.75□□□□□ -1.01
LINC00643Q86TS7 MAP3K14-201ENST00000344686 4460 ntAPPRIS P1 TSL 1 (best) BASIC8.75□□□□□ -1.01
LINC00643Q86TS7 TRAF5-203ENST00000367004 1827 ntAPPRIS P1 TSL 1 (best) BASIC8.75□□□□□ -1.01
LINC00643Q86TS7 PUM3-202ENST00000397885 2321 ntAPPRIS P1 TSL 1 (best) BASIC8.75□□□□□ -1.01
LINC00643Q86TS7 PELO-201ENST00000274311 4349 ntAPPRIS P1 TSL 1 (best) BASIC8.75□□□□□ -1.01
LINC00643Q86TS7 WNK1-204ENST00000530271 11804 ntTSL 1 (best) BASIC8.75□□□□□ -1.01
LINC00643Q86TS7 ERCC2-204ENST00000391945 4153 ntAPPRIS P1 TSL 1 (best) BASIC8.75□□□□□ -1.01
LINC00643Q86TS7 RAB3IP-201ENST00000247833 3690 ntAPPRIS P1 TSL 1 (best) BASIC8.75□□□□□ -1.01
LINC00643Q86TS7 MECP2-201ENST00000303391 10505 ntAPPRIS P1 TSL 1 (best) BASIC8.75□□□□□ -1.01
LINC00643Q86TS7 GCC2-201ENST00000309863 7537 ntAPPRIS P1 TSL 5 BASIC8.75□□□□□ -1.01
LINC00643Q86TS7 ABCF2-201ENST00000222388 2185 ntTSL 5 BASIC8.75□□□□□ -1.01
LINC00643Q86TS7 SLC38A6-201ENST00000267488 1688 ntAPPRIS P1 TSL 1 (best) BASIC8.75□□□□□ -1.01
LINC00643Q86TS7 SNX19-213ENST00000534726 1656 ntTSL 1 (best) BASIC8.75□□□□□ -1.01
LINC00643Q86TS7 AC119674.2-203ENST00000642129 1675 ntAPPRIS P5 BASIC8.75□□□□□ -1.01
LINC00643Q86TS7 LIN28A-202ENST00000326279 4008 ntAPPRIS P1 TSL 1 (best) BASIC8.75□□□□□ -1.01
LINC00643Q86TS7 RAB7B-201ENST00000617070 2888 ntAPPRIS P1 TSL 1 (best) BASIC8.75□□□□□ -1.01
LINC00643Q86TS7 ARHGAP12-205ENST00000396144 5084 ntAPPRIS ALT1 TSL 1 (best) BASIC8.75□□□□□ -1.01
LINC00643Q86TS7 B4GALT4-201ENST00000359213 2385 ntAPPRIS P1 TSL 2 BASIC8.75□□□□□ -1.01
LINC00643Q86TS7 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC8.74□□□□□ -1.01
LINC00643Q86TS7 AL136172.1-201ENST00000598590 1394 ntBASIC8.74□□□□□ -1.01
LINC00643Q86TS7 INTS9-201ENST00000416984 2759 ntTSL 2 BASIC8.74□□□□□ -1.01
LINC00643Q86TS7 LILRB1-208ENST00000427581 2751 ntAPPRIS ALT2 TSL 5 BASIC8.74□□□□□ -1.01
LINC00643Q86TS7 GRIK1-203ENST00000389125 3140 ntAPPRIS P3 TSL 1 (best) BASIC8.74□□□□□ -1.01
LINC00643Q86TS7 PLEKHA7-211ENST00000531066 4561 ntAPPRIS ALT2 TSL 5 BASIC8.74□□□□□ -1.01
LINC00643Q86TS7 PLK4-203ENST00000507249 3195 ntAPPRIS ALT2 TSL 5 BASIC8.74□□□□□ -1.01
LINC00643Q86TS7 SORBS2-203ENST00000319471 2824 ntTSL 1 (best) BASIC8.74□□□□□ -1.01
LINC00643Q86TS7 ATP6AP1-210ENST00000619046 2823 ntTSL 1 (best) BASIC8.74□□□□□ -1.01
LINC00643Q86TS7 AXIN2-209ENST00000618960 4060 ntTSL 5 BASIC8.74□□□□□ -1.01
LINC00643Q86TS7 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC8.74□□□□□ -1.01
LINC00643Q86TS7 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC8.74□□□□□ -1.01
LINC00643Q86TS7 POFUT2-203ENST00000349485 2871 ntAPPRIS P1 TSL 1 (best) BASIC8.74□□□□□ -1.01
LINC00643Q86TS7 KCNMA1-259ENST00000639406 5567 ntAPPRIS ALT2 TSL 1 (best) BASIC8.74□□□□□ -1.01
LINC00643Q86TS7 FOXJ3-201ENST00000361346 5225 ntAPPRIS P3 TSL 1 (best) BASIC8.74□□□□□ -1.01
LINC00643Q86TS7 MAGEB2-201ENST00000378988 1610 ntAPPRIS P1 TSL 1 (best) BASIC8.74□□□□□ -1.01
LINC00643Q86TS7 LIMS2-206ENST00000409754 1620 ntTSL 1 (best) BASIC8.74□□□□□ -1.01
LINC00643Q86TS7 LINC00667-205ENST00000582008 3979 ntTSL 1 (best) BASIC8.74□□□□□ -1.01
LINC00643Q86TS7 LILRB1-202ENST00000396315 2157 ntAPPRIS P4 TSL 1 (best) BASIC8.74□□□□□ -1.01
LINC00643Q86TS7 UNC45B-202ENST00000394570 5638 ntAPPRIS ALT1 TSL 1 (best) BASIC8.74□□□□□ -1.01
LINC00643Q86TS7 SCO1-201ENST00000255390 9612 ntAPPRIS P1 TSL 1 (best) BASIC8.74□□□□□ -1.01
LINC00643Q86TS7 MASP1-203ENST00000337774 5276 ntAPPRIS ALT2 TSL 1 (best) BASIC8.74□□□□□ -1.01
LINC00643Q86TS7 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC8.74□□□□□ -1.01
LINC00643Q86TS7 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC8.74□□□□□ -1.01
LINC00643Q86TS7 FUOM-202ENST00000368551 628 ntTSL 3 BASIC8.74□□□□□ -1.01
LINC00643Q86TS7 SNRPC-202ENST00000374017 1054 ntTSL 2 BASIC8.74□□□□□ -1.01
LINC00643Q86TS7 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC8.74□□□□□ -1.01
LINC00643Q86TS7 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC8.74□□□□□ -1.01
LINC00643Q86TS7 ECEL1P3-201ENST00000427961 737 ntBASIC8.74□□□□□ -1.01
LINC00643Q86TS7 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC8.74□□□□□ -1.01
LINC00643Q86TS7 AC026185.1-201ENST00000445748 174 ntBASIC8.74□□□□□ -1.01
LINC00643Q86TS7 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC8.74□□□□□ -1.01
LINC00643Q86TS7 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC8.74□□□□□ -1.01
LINC00643Q86TS7 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC8.74□□□□□ -1.01
LINC00643Q86TS7 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC8.74□□□□□ -1.01
LINC00643Q86TS7 RNF126P1-202ENST00000569893 925 ntBASIC8.74□□□□□ -1.01
LINC00643Q86TS7 BCL2L12-204ENST00000594157 620 ntTSL 1 (best) BASIC8.74□□□□□ -1.01
LINC00643Q86TS7 ZNF324B-203ENST00000594214 564 ntTSL 2 BASIC8.74□□□□□ -1.01
LINC00643Q86TS7 AL078644.1-201ENST00000609881 752 ntBASIC8.74□□□□□ -1.01
LINC00643Q86TS7 AC005837.3-201ENST00000612163 286 ntBASIC8.74□□□□□ -1.01
LINC00643Q86TS7 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC8.74□□□□□ -1.01
LINC00643Q86TS7 AL589182.2-201ENST00000619332 1049 ntBASIC8.74□□□□□ -1.01
LINC00643Q86TS7 AC073111.5-205ENST00000641717 521 ntBASIC8.74□□□□□ -1.01
LINC00643Q86TS7 KIR3DL1-201ENST00000326542 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC8.74□□□□□ -1.01
LINC00643Q86TS7 AL359317.2-201ENST00000554898 1826 ntTSL 2 BASIC8.74□□□□□ -1.01
LINC00643Q86TS7 AL021392.1-201ENST00000426112 2949 ntTSL 2 BASIC8.74□□□□□ -1.01
LINC00643Q86TS7 SUCO-209ENST00000610051 2925 ntTSL 2 BASIC8.74□□□□□ -1.01
LINC00643Q86TS7 SHPRH-211ENST00000629427 7338 ntAPPRIS ALT1 TSL 5 BASIC8.74□□□□□ -1.01
LINC00643Q86TS7 AL022313.4-201ENST00000562756 2046 ntBASIC8.74□□□□□ -1.01
LINC00643Q86TS7 DCAF6-203ENST00000367843 3302 ntAPPRIS P3 TSL 5 BASIC8.74□□□□□ -1.01
LINC00643Q86TS7 TJP2-201ENST00000348208 4058 ntAPPRIS ALT2 TSL 1 (best) BASIC8.74□□□□□ -1.01
LINC00643Q86TS7 ZNF609-201ENST00000326648 8746 ntAPPRIS P1 TSL 5 BASIC8.74□□□□□ -1.01
LINC00643Q86TS7 SEMA4A-203ENST00000368284 2981 ntTSL 2 BASIC8.74□□□□□ -1.01
LINC00643Q86TS7 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC8.74□□□□□ -1.01
LINC00643Q86TS7 KIR2DL4-205ENST00000396284 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC8.74□□□□□ -1.01
LINC00643Q86TS7 MUTYH-234ENST00000528013 1662 ntTSL 5 BASIC8.74□□□□□ -1.01
LINC00643Q86TS7 MASP1-201ENST00000169293 2440 ntTSL 1 (best) BASIC8.74□□□□□ -1.01
LINC00643Q86TS7 CYP1A1-209ENST00000612821 2402 ntTSL 5 BASIC8.74□□□□□ -1.01
LINC00643Q86TS7 MUC4-203ENST00000346145 3982 ntAPPRIS P4 TSL 1 (best) BASIC8.74□□□□□ -1.01
LINC00643Q86TS7 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC8.74□□□□□ -1.01
LINC00643Q86TS7 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC8.74□□□□□ -1.01
LINC00643Q86TS7 CDHR4-202ENST00000412678 2476 ntAPPRIS P1 TSL 1 (best) BASIC8.74□□□□□ -1.01
LINC00643Q86TS7 MRPS25-201ENST00000253686 4586 ntAPPRIS P1 TSL 1 (best) BASIC8.74□□□□□ -1.01
LINC00643Q86TS7 SPATA33-210ENST00000611218 1546 ntAPPRIS ALT2 TSL 2 BASIC8.74□□□□□ -1.01
LINC00643Q86TS7 NUMB-212ENST00000554546 3607 ntAPPRIS ALT1 TSL 1 (best) BASIC8.74□□□□□ -1.01
LINC00643Q86TS7 STK24-208ENST00000539966 9361 ntAPPRIS ALT2 TSL 1 (best) BASIC8.74□□□□□ -1.01
LINC00643Q86TS7 STAT6-203ENST00000537215 2886 ntTSL 2 BASIC8.74□□□□□ -1.01
LINC00643Q86TS7 SPIN3-245ENST00000640768 1722 ntTSL 5 BASIC8.74□□□□□ -1.01
LINC00643Q86TS7 NHSL2-202ENST00000510661 3082 ntTSL 1 (best) BASIC8.74□□□□□ -1.01
LINC00643Q86TS7 HYOU1-219ENST00000614711 3057 ntTSL 5 BASIC8.74□□□□□ -1.01
LINC00643Q86TS7 NPR3-201ENST00000265074 7344 ntAPPRIS ALT1 TSL 1 (best) BASIC8.74□□□□□ -1.01
LINC00643Q86TS7 DENND2A-210ENST00000537639 3452 ntAPPRIS P1 TSL 1 (best) BASIC8.74□□□□□ -1.01
LINC00643Q86TS7 ZNF44-202ENST00000355684 2119 ntAPPRIS P3 TSL 2 BASIC8.74□□□□□ -1.01
LINC00643Q86TS7 L1CAM-201ENST00000361699 3888 ntAPPRIS ALT1 TSL 1 (best) BASIC8.74□□□□□ -1.01
Retrieved 100 of 98,524 protein–RNA pairs in 76 ms