Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 SLC4A8-205ENST00000535225 2262 ntTSL 2 BASIC12.6□□□□□ -0.39
SOX2P48431 RXRG-204ENST00000619224 2252 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
SOX2P48431 FBXO32-203ENST00000517956 6744 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
SOX2P48431 SLC46A1-207ENST00000612814 6376 ntAPPRIS P1 TSL 2 BASIC12.6□□□□□ -0.39
SOX2P48431 CRISPLD2-209ENST00000567845 2178 ntAPPRIS ALT1 TSL 5 BASIC12.6□□□□□ -0.39
SOX2P48431 PPT2-EGFL8-202ENST00000422437 4181 ntAPPRIS P5 TSL 5 BASIC12.6□□□□□ -0.39
SOX2P48431 ANKRD36B-204ENST00000438709 6067 ntTSL 5 BASIC12.6□□□□□ -0.39
SOX2P48431 ZEB2-204ENST00000409487 5361 ntAPPRIS P2 TSL 5 BASIC12.6□□□□□ -0.39
SOX2P48431 EFHC1-230ENST00000637263 2089 ntTSL 5 BASIC12.6□□□□□ -0.39
SOX2P48431 SPIN3-245ENST00000640768 1722 ntTSL 5 BASIC12.6□□□□□ -0.39
SOX2P48431 C15orf39-207ENST00000567617 4249 ntAPPRIS ALT2 TSL 1 (best) BASIC12.6□□□□□ -0.39
SOX2P48431 TAF12-201ENST00000263974 1359 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
SOX2P48431 CREB3L3-204ENST00000602147 1382 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
SOX2P48431 TOLLIP-203ENST00000525159 3429 ntTSL 2 BASIC12.6□□□□□ -0.39
SOX2P48431 ANKRD11-201ENST00000301030 9301 ntAPPRIS P2 TSL 5 BASIC12.6□□□□□ -0.39
SOX2P48431 LHX6-210ENST00000559895 3587 ntTSL 2 BASIC12.6□□□□□ -0.39
SOX2P48431 NPY-201ENST00000242152 585 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
SOX2P48431 NDUFA2-201ENST00000252102 804 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
SOX2P48431 ALKBH6-201ENST00000252984 955 ntAPPRIS ALT2 TSL 1 (best) BASIC12.6□□□□□ -0.39
SOX2P48431 CD8B-201ENST00000331469 832 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
SOX2P48431 PRTFDC1-203ENST00000376378 747 ntTSL 2 BASIC12.6□□□□□ -0.39
SOX2P48431 ATP5D-202ENST00000395633 704 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
SOX2P48431 RAC2-203ENST00000405484 842 ntAPPRIS ALT1 TSL 3 BASIC12.6□□□□□ -0.39
SOX2P48431 PABPN1L-202ENST00000419291 1272 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
SOX2P48431 AC012441.1-201ENST00000446669 685 ntBASIC12.6□□□□□ -0.39
SOX2P48431 AC002116.1-201ENST00000473572 1130 ntTSL 2 BASIC12.6□□□□□ -0.39
SOX2P48431 WASH4P-201ENST00000564273 1246 ntBASIC12.6□□□□□ -0.39
SOX2P48431 RAB3D-202ENST00000589655 924 ntAPPRIS P1 TSL 2 BASIC12.6□□□□□ -0.39
SOX2P48431 TUBB6-213ENST00000591909 1017 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
SOX2P48431 OR10B1P-201ENST00000601666 907 ntBASIC12.6□□□□□ -0.39
SOX2P48431 ECM1P1-201ENST00000604092 1279 ntBASIC12.6□□□□□ -0.39
SOX2P48431 FOLR3-204ENST00000611028 820 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
SOX2P48431 MLLT10-216ENST00000621220 381 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
SOX2P48431 ORC5-208ENST00000626700 344 ntTSL 3 BASIC12.6□□□□□ -0.39
SOX2P48431 AL033527.5-201ENST00000641382 801 ntBASIC12.6□□□□□ -0.39
SOX2P48431 SUMO1-203ENST00000392246 1536 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
SOX2P48431 PPP1R1B-203ENST00000394267 1504 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
SOX2P48431 RAD23A-209ENST00000592268 1526 ntTSL 5 BASIC12.6□□□□□ -0.39
SOX2P48431 AC098936.1-201ENST00000442318 2885 ntTSL 2 BASIC12.6□□□□□ -0.39
SOX2P48431 MIR34AHG-203ENST00000635687 4211 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
SOX2P48431 CAP1-203ENST00000372797 3105 ntAPPRIS P3 TSL 1 (best) BASIC12.6□□□□□ -0.39
SOX2P48431 TMPO-202ENST00000266732 3615 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
SOX2P48431 AC125807.2-201ENST00000513358 3514 ntBASIC12.6□□□□□ -0.39
SOX2P48431 BCL2L12-211ENST00000614495 1402 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
SOX2P48431 SH3PXD2A-203ENST00000369774 11468 ntAPPRIS ALT2 TSL 5 BASIC12.6□□□□□ -0.39
SOX2P48431 PRAME-205ENST00000405655 2179 ntAPPRIS P2 TSL 1 (best) BASIC12.6□□□□□ -0.39
SOX2P48431 WDR5-201ENST00000358625 3151 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
SOX2P48431 MAP7D2-202ENST00000379651 3930 ntAPPRIS P3 TSL 1 (best) BASIC12.6□□□□□ -0.39
SOX2P48431 APCDD1L-AS1-203ENST00000427140 2092 ntTSL 2 BASIC12.6□□□□□ -0.39
SOX2P48431 DNAJA4-203ENST00000394855 3245 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
SOX2P48431 ATP5J2-PTCD1-201ENST00000413834 2491 ntAPPRIS P1 TSL 2 BASIC12.6□□□□□ -0.39
SOX2P48431 TMEM131L-203ENST00000409959 5017 ntAPPRIS ALT2 TSL 5 BASIC12.6□□□□□ -0.39
SOX2P48431 MYO9A-202ENST00000424560 4008 ntTSL 5 BASIC12.59□□□□□ -0.39
SOX2P48431 LINC01833-203ENST00000437916 2880 ntTSL 3 BASIC12.59□□□□□ -0.39
SOX2P48431 MECP2-217ENST00000628176 1712 ntTSL 3 BASIC12.59□□□□□ -0.39
SOX2P48431 CELF4-201ENST00000334919 3542 ntAPPRIS ALT1 TSL 1 (best) BASIC12.59□□□□□ -0.39
SOX2P48431 FGF1-201ENST00000337706 1469 ntAPPRIS P1 TSL 2 BASIC12.59□□□□□ -0.39
SOX2P48431 DMAC2-204ENST00000438807 1454 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
SOX2P48431 LMBRD2-201ENST00000296603 8185 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
SOX2P48431 ALAS1-204ENST00000469224 2125 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
SOX2P48431 PCDHGB7-202ENST00000612073 2785 ntAPPRIS ALT2 BASIC12.59□□□□□ -0.39
SOX2P48431 KCTD9-201ENST00000221200 3401 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
SOX2P48431 MLPH-201ENST00000264605 3823 ntAPPRIS P3 TSL 1 (best) BASIC12.59□□□□□ -0.39
SOX2P48431 HMGCL-203ENST00000374490 1600 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
SOX2P48431 ATXN2L-205ENST00000395547 3981 ntAPPRIS P4 TSL 1 (best) BASIC12.59□□□□□ -0.39
SOX2P48431 CALCOCO2-211ENST00000508679 1396 ntTSL 2 BASIC12.59□□□□□ -0.39
SOX2P48431 TESMIN-204ENST00000443940 3495 ntTSL 2 BASIC12.59□□□□□ -0.39
SOX2P48431 CAMSAP3-201ENST00000160298 3889 ntAPPRIS P3 TSL 2 BASIC12.59□□□□□ -0.39
SOX2P48431 COBLL1-225ENST00000629362 3868 ntAPPRIS ALT2 TSL 2 BASIC12.59□□□□□ -0.39
SOX2P48431 LRIF1-202ENST00000485275 1796 ntAPPRIS ALT2 TSL 2 BASIC12.59□□□□□ -0.39
SOX2P48431 SFTA3-204ENST00000518529 1531 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
SOX2P48431 LINC01285-204ENST00000634601 1947 ntTSL 5 BASIC12.59□□□□□ -0.39
SOX2P48431 PPP6C-203ENST00000451402 4349 ntTSL 2 BASIC12.59□□□□□ -0.39
SOX2P48431 YLPM1-207ENST00000552421 4899 ntAPPRIS ALT2 TSL 5 BASIC12.59□□□□□ -0.39
SOX2P48431 ASAP3-202ENST00000437606 2865 ntAPPRIS ALT2 TSL 2 BASIC12.59□□□□□ -0.39
SOX2P48431 TMEM200A-204ENST00000617887 2899 ntAPPRIS P1 TSL 2 BASIC12.59□□□□□ -0.39
SOX2P48431 ANGPTL8-201ENST00000252453 872 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
SOX2P48431 NAT8-201ENST00000272425 947 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
SOX2P48431 ENDOV-201ENST00000323854 1226 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
SOX2P48431 NXT2-202ENST00000372103 1085 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
SOX2P48431 EIF1AX-201ENST00000379593 765 ntTSL 3 BASIC12.59□□□□□ -0.39
SOX2P48431 DBI-203ENST00000393103 599 ntAPPRIS P4 TSL 1 (best) BASIC12.59□□□□□ -0.39
SOX2P48431 RTN4RL2-202ENST00000395120 582 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
SOX2P48431 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC12.59□□□□□ -0.39
SOX2P48431 PTPA-215ENST00000432124 567 ntTSL 4 BASIC12.59□□□□□ -0.39
SOX2P48431 AC114730.3-201ENST00000435195 584 ntTSL 5 BASIC12.59□□□□□ -0.39
SOX2P48431 CICP12-201ENST00000455801 843 ntBASIC12.59□□□□□ -0.39
SOX2P48431 LINC01336-201ENST00000503568 534 ntTSL 4 BASIC12.59□□□□□ -0.39
SOX2P48431 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC12.59□□□□□ -0.39
SOX2P48431 IFITM1-204ENST00000528780 730 ntAPPRIS P1 TSL 3 BASIC12.59□□□□□ -0.39
SOX2P48431 NEU3-203ENST00000529024 581 ntTSL 3 BASIC12.59□□□□□ -0.39
SOX2P48431 TDH-203ENST00000531764 1110 ntBASIC12.59□□□□□ -0.39
SOX2P48431 CDK4-206ENST00000549606 558 ntTSL 2 BASIC12.59□□□□□ -0.39
SOX2P48431 AIPL1-204ENST00000570466 1196 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
SOX2P48431 MIR4683-201ENST00000579659 81 ntBASIC12.59□□□□□ -0.39
SOX2P48431 KRT18P8-201ENST00000581937 1246 ntBASIC12.59□□□□□ -0.39
SOX2P48431 AC027575.2-201ENST00000585258 1295 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
SOX2P48431 LDLRAD4-208ENST00000586765 844 ntTSL 2 BASIC12.59□□□□□ -0.39
SOX2P48431 ANGPTL8-203ENST00000591200 504 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
SOX2P48431 UBXN1-218ENST00000616865 1002 ntTSL 5 BASIC12.59□□□□□ -0.39
Retrieved 100 of 98,524 protein–RNA pairs in 66.7 ms