Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 BCRP2-203ENST00000461808 1832 ntTSL 2 BASIC13.63□□□□□ -0.23
MSX2P35548 NTMT1-202ENST00000372481 741 ntTSL 2 BASIC13.63□□□□□ -0.23
MSX2P35548 PIR-201ENST00000380420 1282 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
MSX2P35548 WDR45-208ENST00000396681 1146 ntTSL 5 BASIC13.63□□□□□ -0.23
MSX2P35548 TEN1-201ENST00000397640 994 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
MSX2P35548 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC13.63□□□□□ -0.23
MSX2P35548 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC13.63□□□□□ -0.23
MSX2P35548 AK2P2-201ENST00000439142 405 ntBASIC13.63□□□□□ -0.23
MSX2P35548 AC004890.2-204ENST00000481968 304 ntBASIC13.63□□□□□ -0.23
MSX2P35548 FAM167A-AS1-202ENST00000533578 1222 ntTSL 2 BASIC13.63□□□□□ -0.23
MSX2P35548 TMEM63A-209ENST00000537914 1018 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
MSX2P35548 RIC8B-209ENST00000549643 571 ntTSL 4 BASIC13.63□□□□□ -0.23
MSX2P35548 AC012645.3-203ENST00000567153 520 ntTSL 2 BASIC13.63□□□□□ -0.23
MSX2P35548 AC008758.5-201ENST00000595562 617 ntAPPRIS P1 TSL 4 BASIC13.63□□□□□ -0.23
MSX2P35548 OAS3-201ENST00000228928 6719 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
MSX2P35548 GNAI2-201ENST00000266027 2169 ntTSL 2 BASIC13.63□□□□□ -0.23
MSX2P35548 CCNE1-202ENST00000357943 1641 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
MSX2P35548 COX6B2-210ENST00000593184 2083 ntAPPRIS P1 TSL 2 BASIC13.63□□□□□ -0.23
MSX2P35548 EIF4G1-219ENST00000435046 4668 ntTSL 5 BASIC13.63□□□□□ -0.23
MSX2P35548 HTR3A-201ENST00000299961 1994 ntTSL 2 BASIC13.63□□□□□ -0.23
MSX2P35548 SLC38A1-204ENST00000546893 2332 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
MSX2P35548 CYYR1-201ENST00000299340 3101 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
MSX2P35548 AC004997.1-205ENST00000447976 1851 ntTSL 2 BASIC13.63□□□□□ -0.23
MSX2P35548 PIK3R3-203ENST00000420542 5174 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
MSX2P35548 FAM214B-208ENST00000605244 3016 ntAPPRIS P1 TSL 5 BASIC13.63□□□□□ -0.23
MSX2P35548 RPA2-203ENST00000373912 1752 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
MSX2P35548 SLC5A4-201ENST00000266086 2030 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
MSX2P35548 SIPA1L3-201ENST00000222345 7987 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
MSX2P35548 CCDC51-201ENST00000395694 1560 ntAPPRIS P1 TSL 2 BASIC13.62□□□□□ -0.23
MSX2P35548 LINC002481-201ENST00000499502 1821 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
MSX2P35548 VWA5B2-201ENST00000273794 3486 ntTSL 2 BASIC13.62□□□□□ -0.23
MSX2P35548 TBC1D22B-201ENST00000373491 3462 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
MSX2P35548 NOTCH1-201ENST00000277541 9371 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
MSX2P35548 AC108024.1-201ENST00000626286 1721 ntBASIC13.62□□□□□ -0.23
MSX2P35548 ZNF333-209ENST00000601134 1392 ntTSL 5 BASIC13.62□□□□□ -0.23
MSX2P35548 AP2M1-207ENST00000439647 1950 ntAPPRIS ALT1 TSL 2 BASIC13.62□□□□□ -0.23
MSX2P35548 AL117190.1-201ENST00000637474 1985 ntTSL 5 BASIC13.62□□□□□ -0.23
MSX2P35548 SCNN1B-202ENST00000343070 2597 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
MSX2P35548 PGM1-202ENST00000371084 2472 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
MSX2P35548 C16orf45-202ENST00000452191 1865 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
MSX2P35548 ACTR3-201ENST00000263238 6718 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
MSX2P35548 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
MSX2P35548 SIGLEC12-201ENST00000291707 2121 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
MSX2P35548 PDZK1IP1-201ENST00000294338 846 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
MSX2P35548 CRYAA-202ENST00000398132 826 ntTSL 2 BASIC13.62□□□□□ -0.23
MSX2P35548 P3H2-AS1-201ENST00000412203 730 ntTSL 5 BASIC13.62□□□□□ -0.23
MSX2P35548 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
MSX2P35548 DNAJB3-202ENST00000449667 1266 ntBASIC13.62□□□□□ -0.23
MSX2P35548 RASA3-IT1-201ENST00000454005 380 ntTSL 3 BASIC13.62□□□□□ -0.23
MSX2P35548 AC114956.2-201ENST00000512498 572 ntTSL 4 BASIC13.62□□□□□ -0.23
MSX2P35548 AC104596.2-201ENST00000512793 793 ntBASIC13.62□□□□□ -0.23
MSX2P35548 AC136475.2-201ENST00000526612 392 ntTSL 3 BASIC13.62□□□□□ -0.23
MSX2P35548 AC130456.4-201ENST00000568635 665 ntTSL 2 BASIC13.62□□□□□ -0.23
MSX2P35548 JPT2-214ENST00000569765 782 ntTSL 2 BASIC13.62□□□□□ -0.23
MSX2P35548 KSR1-207ENST00000578981 748 ntTSL 4 BASIC13.62□□□□□ -0.23
MSX2P35548 AC138474.1-201ENST00000586630 523 ntTSL 3 BASIC13.62□□□□□ -0.23
MSX2P35548 AC015911.4-201ENST00000588022 1070 ntBASIC13.62□□□□□ -0.23
MSX2P35548 FP236240.1-204ENST00000624932 712 ntTSL 2 BASIC13.62□□□□□ -0.23
MSX2P35548 HK2-201ENST00000290573 5772 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
MSX2P35548 CYP26B1-205ENST00000546307 4331 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
MSX2P35548 NFATC1-203ENST00000329101 4595 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
MSX2P35548 SMPDL3B-201ENST00000373888 1548 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
MSX2P35548 C9orf47-203ENST00000375851 4837 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
MSX2P35548 CETP-201ENST00000200676 1791 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
MSX2P35548 ITGA6-202ENST00000409080 5306 ntTSL 2 BASIC13.62□□□□□ -0.23
MSX2P35548 DDX43-201ENST00000370336 2513 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
MSX2P35548 SLC48A1-201ENST00000442218 3010 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
MSX2P35548 CSPG4P12-202ENST00000559989 7790 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
MSX2P35548 APLP2-202ENST00000278756 3687 ntAPPRIS ALT2 TSL 2 BASIC13.62□□□□□ -0.23
MSX2P35548 AC015712.2-201ENST00000560351 3688 ntTSL 2 BASIC13.62□□□□□ -0.23
MSX2P35548 ESPNL-202ENST00000409169 4441 ntTSL 5 BASIC13.62□□□□□ -0.23
MSX2P35548 PI4KAP2-201ENST00000360806 2080 ntBASIC13.62□□□□□ -0.23
MSX2P35548 LGALS12-204ENST00000415491 1816 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
MSX2P35548 CACNA1G-203ENST00000358244 7030 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
MSX2P35548 LPO-203ENST00000421678 2729 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
MSX2P35548 MTUS1-204ENST00000381869 6256 ntTSL 5 BASIC13.62□□□□□ -0.23
MSX2P35548 PPT1-205ENST00000449045 1957 ntTSL 2 BASIC13.62□□□□□ -0.23
MSX2P35548 MED14-201ENST00000324817 7984 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
MSX2P35548 NDRG4-236ENST00000566192 3265 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
MSX2P35548 MYBBP1A-201ENST00000254718 4807 ntAPPRIS P3 TSL 1 (best) BASIC13.61□□□□□ -0.23
MSX2P35548 MAP2K4P1-202ENST00000602584 2539 ntTSL 2 BASIC13.61□□□□□ -0.23
MSX2P35548 ENOSF1-209ENST00000580982 1397 ntTSL 5 BASIC13.61□□□□□ -0.23
MSX2P35548 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
MSX2P35548 SYT12-201ENST00000393946 4534 ntAPPRIS P1 TSL 2 BASIC13.61□□□□□ -0.23
MSX2P35548 ADM2-202ENST00000395738 4276 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
MSX2P35548 CCDC88A-201ENST00000263630 9667 ntAPPRIS P3 TSL 1 (best) BASIC13.61□□□□□ -0.23
MSX2P35548 NRXN1-207ENST00000404971 7578 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
MSX2P35548 AC046130.1-201ENST00000501954 2179 ntTSL 5 BASIC13.61□□□□□ -0.23
MSX2P35548 BCS1L-203ENST00000392110 1525 ntAPPRIS P1 TSL 2 BASIC13.61□□□□□ -0.23
MSX2P35548 TBC1D8-AS1-201ENST00000610202 2478 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
MSX2P35548 CYFIP2-219ENST00000616178 4210 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
MSX2P35548 FIS1-201ENST00000223136 734 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
MSX2P35548 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC13.61□□□□□ -0.23
MSX2P35548 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
MSX2P35548 VMA21-202ENST00000370361 693 ntTSL 5 BASIC13.61□□□□□ -0.23
MSX2P35548 LYPLA2-201ENST00000374501 1117 ntTSL 2 BASIC13.61□□□□□ -0.23
MSX2P35548 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
MSX2P35548 AC098850.1-201ENST00000419919 790 ntBASIC13.61□□□□□ -0.23
MSX2P35548 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC13.61□□□□□ -0.23
MSX2P35548 HCST-202ENST00000437550 445 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.23
Retrieved 100 of 98,524 protein–RNA pairs in 43.2 ms