Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 PSMB10-201ENST00000358514 1218 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
SMARCA1P28370 MRPL19-201ENST00000358788 693 ntTSL 5 BASIC16.17■□□□□ 0.18
SMARCA1P28370 CSAG1-203ENST00000370291 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
SMARCA1P28370 NUDT2-203ENST00000379158 1075 ntAPPRIS P1 TSL 3 BASIC16.17■□□□□ 0.18
SMARCA1P28370 AP000356.3-201ENST00000382243 753 ntBASIC16.17■□□□□ 0.18
SMARCA1P28370 FGFR3P1-201ENST00000449999 601 ntBASIC16.17■□□□□ 0.18
SMARCA1P28370 AC069185.1-202ENST00000533405 471 ntTSL 3 BASIC16.17■□□□□ 0.18
SMARCA1P28370 SOCS2-AS1-204ENST00000551626 618 ntTSL 4 BASIC16.17■□□□□ 0.18
SMARCA1P28370 FOS-206ENST00000555347 1280 ntTSL 2 BASIC16.17■□□□□ 0.18
SMARCA1P28370 AL049840.2-201ENST00000602722 535 ntBASIC16.17■□□□□ 0.18
SMARCA1P28370 C15orf59-AS1-202ENST00000615095 1224 ntTSL 5 BASIC16.17■□□□□ 0.18
SMARCA1P28370 AC242376.2-201ENST00000619355 883 ntBASIC16.17■□□□□ 0.18
SMARCA1P28370 AC025262.2-201ENST00000623975 1056 ntBASIC16.17■□□□□ 0.18
SMARCA1P28370 MCHR2-201ENST00000281806 2368 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
SMARCA1P28370 OSBP2-201ENST00000332585 4340 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
SMARCA1P28370 BLK-201ENST00000259089 2606 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
SMARCA1P28370 CHI3L1-201ENST00000255409 1792 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
SMARCA1P28370 TMEM40-205ENST00000435575 1785 ntAPPRIS ALT2 TSL 2 BASIC16.17■□□□□ 0.18
SMARCA1P28370 HEXA-206ENST00000566304 1795 ntTSL 2 BASIC16.17■□□□□ 0.18
SMARCA1P28370 GRM7-215ENST00000486284 4241 ntAPPRIS ALT2 TSL 5 BASIC16.17■□□□□ 0.18
SMARCA1P28370 TSPAN12-201ENST00000222747 2798 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
SMARCA1P28370 LPO-210ENST00000582328 2680 ntAPPRIS ALT2 TSL 5 BASIC16.17■□□□□ 0.18
SMARCA1P28370 ADRB2-201ENST00000305988 3443 ntAPPRIS P1 BASIC16.17■□□□□ 0.18
SMARCA1P28370 DUSP27-201ENST00000271385 3597 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
SMARCA1P28370 HEATR3-201ENST00000299192 3560 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
SMARCA1P28370 KRT75-201ENST00000252245 2324 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
SMARCA1P28370 HNRNPH3-201ENST00000265866 2339 ntAPPRIS P4 TSL 1 (best) BASIC16.17■□□□□ 0.18
SMARCA1P28370 FCRL1-207ENST00000491942 1554 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
SMARCA1P28370 HIGD1A-202ENST00000418900 1322 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
SMARCA1P28370 TEAD3-201ENST00000338863 2983 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
SMARCA1P28370 SLC11A2-204ENST00000541174 2470 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
SMARCA1P28370 EML1-201ENST00000262233 4535 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
SMARCA1P28370 HTR7-202ENST00000336152 3126 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
SMARCA1P28370 DCAF13-209ENST00000616836 2639 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
SMARCA1P28370 ZKSCAN4-201ENST00000377294 2375 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
SMARCA1P28370 TIFA-201ENST00000361717 4157 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
SMARCA1P28370 PDE7A-203ENST00000401827 3673 ntAPPRIS ALT1 TSL 1 (best) BASIC16.16■□□□□ 0.18
SMARCA1P28370 RERG-201ENST00000256953 2264 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
SMARCA1P28370 AMT-201ENST00000273588 2280 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
SMARCA1P28370 ODCP-201ENST00000459650 1639 ntBASIC16.16■□□□□ 0.18
SMARCA1P28370 NBEA-201ENST00000310336 10794 ntAPPRIS ALT1 TSL 1 (best) BASIC16.16■□□□□ 0.18
SMARCA1P28370 GRIN3A-201ENST00000361820 7770 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
SMARCA1P28370 MINDY4B-201ENST00000465419 1383 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
SMARCA1P28370 GOLGA8UP-201ENST00000527159 1755 ntBASIC16.16■□□□□ 0.18
SMARCA1P28370 AXIN2-201ENST00000307078 4259 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
SMARCA1P28370 CDH16-201ENST00000299752 2954 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
SMARCA1P28370 TCN2-202ENST00000405742 1936 ntAPPRIS ALT2 TSL 5 BASIC16.16■□□□□ 0.18
SMARCA1P28370 WIZ-203ENST00000545156 4466 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
SMARCA1P28370 VARS2-201ENST00000321897 4073 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
SMARCA1P28370 DLG1-AS1-202ENST00000430666 1694 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
SMARCA1P28370 OR2V1-201ENST00000329365 948 ntAPPRIS P1 BASIC16.16■□□□□ 0.18
SMARCA1P28370 TNNT2-202ENST00000360372 969 ntTSL 5 BASIC16.16■□□□□ 0.18
SMARCA1P28370 TNNT2-204ENST00000367317 1050 ntAPPRIS ALT2 TSL 5 BASIC16.16■□□□□ 0.18
SMARCA1P28370 CITED1-202ENST00000373619 886 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
SMARCA1P28370 AC092506.1-202ENST00000401022 528 ntBASIC16.16■□□□□ 0.18
SMARCA1P28370 TNNT2-209ENST00000421663 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
SMARCA1P28370 HPGD-203ENST00000422112 805 ntTSL 2 BASIC16.16■□□□□ 0.18
SMARCA1P28370 AL139241.1-201ENST00000433374 1168 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
SMARCA1P28370 AP000356.1-201ENST00000438893 364 ntTSL 3 BASIC16.16■□□□□ 0.18
SMARCA1P28370 TREX1-202ENST00000444177 1200 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
SMARCA1P28370 LY6E-208ENST00000520531 490 ntTSL 2 BASIC16.16■□□□□ 0.18
SMARCA1P28370 AP000911.2-201ENST00000534330 502 ntBASIC16.16■□□□□ 0.18
SMARCA1P28370 HIST1H3C-201ENST00000612966 411 ntAPPRIS P1 BASIC16.16■□□□□ 0.18
SMARCA1P28370 RPS10-207ENST00000621356 784 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
SMARCA1P28370 SLC35A2-204ENST00000376521 3047 ntAPPRIS ALT1 TSL 1 (best) BASIC16.16■□□□□ 0.18
SMARCA1P28370 ZC3HAV1-204ENST00000471652 3182 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
SMARCA1P28370 SMG9-211ENST00000601170 2387 ntTSL 2 BASIC16.16■□□□□ 0.18
SMARCA1P28370 NRP2-203ENST00000357785 2926 ntAPPRIS P4 TSL 1 (best) BASIC16.16■□□□□ 0.18
SMARCA1P28370 KDM5C-205ENST00000404049 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
SMARCA1P28370 ACTN4-203ENST00000424234 1566 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
SMARCA1P28370 NRADDP-202ENST00000641269 1585 ntBASIC16.16■□□□□ 0.18
SMARCA1P28370 PHKG1-210ENST00000537360 2139 ntAPPRIS ALT1 TSL 1 (best) BASIC16.16■□□□□ 0.18
SMARCA1P28370 MINK1-201ENST00000347992 4863 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
SMARCA1P28370 RABEPK-201ENST00000259460 1313 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
SMARCA1P28370 LAIR1-201ENST00000348231 1467 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
SMARCA1P28370 FERMT3-202ENST00000345728 2481 ntAPPRIS ALT1 TSL 1 (best) BASIC16.16■□□□□ 0.18
SMARCA1P28370 HPSE2-206ENST00000628193 1760 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
SMARCA1P28370 GPSM1-205ENST00000440944 3633 ntAPPRIS P2 TSL 5 BASIC16.15■□□□□ 0.18
SMARCA1P28370 OR2I1P-209ENST00000641730 5365 ntBASIC16.15■□□□□ 0.18
SMARCA1P28370 LATS2-201ENST00000382592 5511 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
SMARCA1P28370 SGK2-204ENST00000373100 2225 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
SMARCA1P28370 OR6A2-201ENST00000332601 1373 ntAPPRIS P1 BASIC16.15■□□□□ 0.18
SMARCA1P28370 CNOT10-201ENST00000328834 2815 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
SMARCA1P28370 AP4E1-201ENST00000261842 6758 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
SMARCA1P28370 AC015909.5-201ENST00000624336 2266 ntBASIC16.15■□□□□ 0.18
SMARCA1P28370 PPM1M-201ENST00000296487 2429 ntTSL 2 BASIC16.15■□□□□ 0.18
SMARCA1P28370 RIDA-201ENST00000254878 1057 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
SMARCA1P28370 NUDT1-203ENST00000356714 662 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
SMARCA1P28370 AL935212.1-201ENST00000377548 906 ntTSL 5 BASIC16.15■□□□□ 0.18
SMARCA1P28370 NUDT1-204ENST00000397046 712 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
SMARCA1P28370 MPV17-204ENST00000399052 749 ntTSL 4 BASIC16.15■□□□□ 0.18
SMARCA1P28370 CELP-201ENST00000411440 1249 ntTSL 5 BASIC16.15■□□□□ 0.18
SMARCA1P28370 POLR2B-205ENST00000441246 3839 ntTSL 2 BASIC16.15■□□□□ 0.18
SMARCA1P28370 Z99943.1-201ENST00000451545 718 ntTSL 3 BASIC16.15■□□□□ 0.18
SMARCA1P28370 DMKN-229ENST00000467637 827 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
SMARCA1P28370 AC124301.1-201ENST00000524885 602 ntTSL 3 BASIC16.15■□□□□ 0.18
SMARCA1P28370 C12orf73-210ENST00000552940 685 ntTSL 2 BASIC16.15■□□□□ 0.18
SMARCA1P28370 HERC2P11-201ENST00000562845 725 ntBASIC16.15■□□□□ 0.18
SMARCA1P28370 DNM1P30-201ENST00000563586 452 ntBASIC16.15■□□□□ 0.18
SMARCA1P28370 AC100756.2-201ENST00000569537 736 ntBASIC16.15■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 38.2 ms