Protein–RNA interactions for Protein: P19447

ERCC3, TFIIH basal transcription factor complex helicase XPB subunit, humanhuman

Predictions only

Length 782 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC3P19447 TRMT1-201ENST00000221504 2179 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
ERCC3P19447 PDE1B-207ENST00000550620 2150 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
ERCC3P19447 HOGA1-203ENST00000370647 1999 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
ERCC3P19447 COL6A2-201ENST00000300527 3461 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
ERCC3P19447 SPACA9-203ENST00000372136 2536 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
ERCC3P19447 GGT1-202ENST00000400380 2540 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
ERCC3P19447 PLCB1-218ENST00000629992 3095 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
ERCC3P19447 BCAT2-201ENST00000316273 1552 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
ERCC3P19447 PEX5-207ENST00000455147 2689 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
ERCC3P19447 WSCD1-202ENST00000539421 2665 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
ERCC3P19447 ZBED8-202ENST00000523213 2484 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
ERCC3P19447 GGACT-201ENST00000376250 2804 ntAPPRIS P1 TSL 3 BASIC16.51■□□□□ 0.23
ERCC3P19447 API5-208ENST00000531273 1868 ntTSL 2 BASIC16.5■□□□□ 0.23
ERCC3P19447 RELL1-201ENST00000314117 1326 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
ERCC3P19447 SLC35B2-206ENST00000615337 2014 ntTSL 4 BASIC16.5■□□□□ 0.23
ERCC3P19447 SEMA3F-202ENST00000413852 3212 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
ERCC3P19447 NCKAP5L-201ENST00000335999 4900 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
ERCC3P19447 KC6-207ENST00000600644 2311 ntTSL 3 BASIC16.5■□□□□ 0.23
ERCC3P19447 CORO7-201ENST00000251166 3540 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
ERCC3P19447 MBD4-201ENST00000249910 2470 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
ERCC3P19447 MIR645-201ENST00000385283 94 ntBASIC16.5■□□□□ 0.23
ERCC3P19447 GUSBP10-201ENST00000417412 665 ntBASIC16.5■□□□□ 0.23
ERCC3P19447 AL512306.1-201ENST00000432698 848 ntBASIC16.5■□□□□ 0.23
ERCC3P19447 LINC00028-201ENST00000435497 587 ntTSL 2 BASIC16.5■□□□□ 0.23
ERCC3P19447 AC092638.2-201ENST00000441105 947 ntBASIC16.5■□□□□ 0.23
ERCC3P19447 AL392046.1-202ENST00000457255 521 ntTSL 5 BASIC16.5■□□□□ 0.23
ERCC3P19447 VDAC3-211ENST00000522572 799 ntTSL 5 BASIC16.5■□□□□ 0.23
ERCC3P19447 TMEM14C-205ENST00000541412 1177 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
ERCC3P19447 CRTC3-AS1-202ENST00000559531 657 ntTSL 3 BASIC16.5■□□□□ 0.23
ERCC3P19447 HERC2P11-201ENST00000562845 725 ntBASIC16.5■□□□□ 0.23
ERCC3P19447 AC100756.2-201ENST00000569537 736 ntBASIC16.5■□□□□ 0.23
ERCC3P19447 AC021016.3-201ENST00000608367 477 ntBASIC16.5■□□□□ 0.23
ERCC3P19447 AC127024.7-201ENST00000625101 200 ntBASIC16.5■□□□□ 0.23
ERCC3P19447 RNF166-210ENST00000568683 1768 ntTSL 3 BASIC16.5■□□□□ 0.23
ERCC3P19447 MLXIPL-201ENST00000313375 3278 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
ERCC3P19447 MLXIPL-206ENST00000434326 3252 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
ERCC3P19447 BX640514.1-201ENST00000583223 1918 ntBASIC16.5■□□□□ 0.23
ERCC3P19447 CCDC50-201ENST00000392455 8429 ntAPPRIS ALT1 TSL 1 (best) BASIC16.5■□□□□ 0.23
ERCC3P19447 PBXIP1-202ENST00000368463 3212 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
ERCC3P19447 PCNA-202ENST00000379160 1359 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
ERCC3P19447 FAM168A-204ENST00000450446 1364 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
ERCC3P19447 PIGS-203ENST00000395346 2815 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
ERCC3P19447 ABCC10-201ENST00000244533 5088 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
ERCC3P19447 NTRK2-202ENST00000304053 8226 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
ERCC3P19447 SPAG9-222ENST00000618113 8246 ntAPPRIS ALT1 TSL 5 BASIC16.5■□□□□ 0.23
ERCC3P19447 IRF9-202ENST00000396864 1838 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
ERCC3P19447 AMACR-203ENST00000382072 2919 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
ERCC3P19447 TAB1-201ENST00000216160 3237 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
ERCC3P19447 SHTN1-204ENST00000392903 2400 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
ERCC3P19447 TMPRSS3-202ENST00000398397 1342 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
ERCC3P19447 NUBPL-201ENST00000281081 3049 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
ERCC3P19447 CEP128-201ENST00000216517 1606 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
ERCC3P19447 C12orf49-201ENST00000261318 8404 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
ERCC3P19447 AC021683.1-201ENST00000585798 1767 ntTSL 5 BASIC16.49■□□□□ 0.23
ERCC3P19447 KIF17-203ENST00000400463 3731 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
ERCC3P19447 SSBP1-201ENST00000265304 687 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
ERCC3P19447 CCHCR1-201ENST00000376266 2625 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
ERCC3P19447 PPP1R1B-202ENST00000394265 1419 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
ERCC3P19447 CBX3-202ENST00000396386 1857 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
ERCC3P19447 SBF1P1-201ENST00000444527 5631 ntBASIC16.49■□□□□ 0.23
ERCC3P19447 AC004837.1-201ENST00000446267 564 ntBASIC16.49■□□□□ 0.23
ERCC3P19447 KRT18P66-201ENST00000452970 1269 ntBASIC16.49■□□□□ 0.23
ERCC3P19447 LINC01563-201ENST00000456235 750 ntTSL 2 BASIC16.49■□□□□ 0.23
ERCC3P19447 NCK1-AS1-203ENST00000474250 827 ntTSL 2 BASIC16.49■□□□□ 0.23
ERCC3P19447 INSC-208ENST00000530161 1702 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
ERCC3P19447 AC135782.2-201ENST00000562040 472 ntTSL 3 BASIC16.49■□□□□ 0.23
ERCC3P19447 MAFTRR-203ENST00000567993 685 ntTSL 3 BASIC16.49■□□□□ 0.23
ERCC3P19447 SRRM2-205ENST00000570971 1132 ntTSL 2 BASIC16.49■□□□□ 0.23
ERCC3P19447 SNHG25-202ENST00000582965 278 ntTSL 2 BASIC16.49■□□□□ 0.23
ERCC3P19447 AC011462.2-201ENST00000598887 344 ntTSL 5 BASIC16.49■□□□□ 0.23
ERCC3P19447 CNOT3-201ENST00000221232 2852 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
ERCC3P19447 GRK6-211ENST00000528793 2571 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
ERCC3P19447 CNBP-201ENST00000422453 1664 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
ERCC3P19447 KIR3DL2-201ENST00000270442 1546 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
ERCC3P19447 LACTB2-201ENST00000276590 1508 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
ERCC3P19447 PGAP2-227ENST00000496834 1530 ntTSL 2 BASIC16.49■□□□□ 0.23
ERCC3P19447 LINC00924-202ENST00000556053 2682 ntTSL 2 BASIC16.49■□□□□ 0.23
ERCC3P19447 ADAMTS14-202ENST00000373208 5269 ntAPPRIS P4 TSL 2 BASIC16.49■□□□□ 0.23
ERCC3P19447 PPP1R26P4-201ENST00000619065 3527 ntBASIC16.49■□□□□ 0.23
ERCC3P19447 SLC25A18-201ENST00000327451 2244 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
ERCC3P19447 EDEM2-202ENST00000374492 1919 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
ERCC3P19447 MTA3-203ENST00000406652 5484 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
ERCC3P19447 MAP3K12-201ENST00000267079 4319 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
ERCC3P19447 GPX3-201ENST00000388825 1636 ntAPPRIS P2 TSL 1 (best) BASIC16.48■□□□□ 0.23
ERCC3P19447 ZNF516-201ENST00000443185 8118 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
ERCC3P19447 APBB3-205ENST00000412920 1455 ntAPPRIS ALT1 TSL 1 (best) BASIC16.48■□□□□ 0.23
ERCC3P19447 EGOT-201ENST00000414938 1464 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
ERCC3P19447 COL9A2-202ENST00000372748 2862 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
ERCC3P19447 ADAM23-202ENST00000374415 2714 ntAPPRIS ALT1 TSL 5 BASIC16.48■□□□□ 0.23
ERCC3P19447 IL9R-202ENST00000369423 2032 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
ERCC3P19447 C12orf76-207ENST00000549724 1302 ntTSL 5 BASIC16.48■□□□□ 0.23
ERCC3P19447 AC011287.1-201ENST00000639998 1349 ntTSL 5 BASIC16.48■□□□□ 0.23
ERCC3P19447 ZNF7-203ENST00000525266 1874 ntTSL 2 BASIC16.48■□□□□ 0.23
ERCC3P19447 ZKSCAN2-201ENST00000328086 7523 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
ERCC3P19447 HCG27-201ENST00000383331 1720 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
ERCC3P19447 PAX7-202ENST00000400661 1700 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
ERCC3P19447 KCND3-201ENST00000302127 2659 ntAPPRIS ALT1 TSL 5 BASIC16.48■□□□□ 0.23
ERCC3P19447 EDNRB-204ENST00000626030 1571 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
ERCC3P19447 FKBP9-214ENST00000538336 3621 ntTSL 2 BASIC16.48■□□□□ 0.23
ERCC3P19447 CNDP2-201ENST00000324262 5130 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 34.2 ms