Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 TBC1D3E-201ENST00000621587 2076 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
TPM1P09493 EFHC1-230ENST00000637263 2089 ntTSL 5 BASIC15.77■□□□□ 0.12
TPM1P09493 BAX-201ENST00000293288 1358 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
TPM1P09493 TDG-209ENST00000544861 1387 ntTSL 2 BASIC15.77■□□□□ 0.12
TPM1P09493 CENPL-202ENST00000356198 2357 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
TPM1P09493 C8B-201ENST00000371237 2037 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
TPM1P09493 ENO3-206ENST00000519584 1322 ntTSL 2 BASIC15.77■□□□□ 0.12
TPM1P09493 MED6-201ENST00000256379 1995 ntAPPRIS P2 TSL 1 (best) BASIC15.77■□□□□ 0.12
TPM1P09493 BEGAIN-212ENST00000637716 3259 ntAPPRIS P5 TSL 5 BASIC15.77■□□□□ 0.12
TPM1P09493 EIF4E2-201ENST00000258416 1604 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
TPM1P09493 AL357143.1-202ENST00000640531 5777 ntTSL 5 BASIC15.77■□□□□ 0.12
TPM1P09493 COX6A1-201ENST00000229379 572 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
TPM1P09493 ANGPTL8-201ENST00000252453 872 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
TPM1P09493 C19orf18-201ENST00000314391 915 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
TPM1P09493 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
TPM1P09493 TMEM91-202ENST00000356385 944 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
TPM1P09493 FANK1-204ENST00000368695 1296 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
TPM1P09493 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
TPM1P09493 C9orf116-205ENST00000429260 678 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
TPM1P09493 AL022068.1-202ENST00000432171 794 ntTSL 3 BASIC15.77■□□□□ 0.12
TPM1P09493 AC106897.1-201ENST00000512874 394 ntTSL 2 BASIC15.77■□□□□ 0.12
TPM1P09493 IGHVIII-5-2-201ENST00000522505 261 ntBASIC15.77■□□□□ 0.12
TPM1P09493 AC138466.1-201ENST00000535242 391 ntTSL 3 BASIC15.77■□□□□ 0.12
TPM1P09493 AC093525.1-201ENST00000569317 596 ntAPPRIS P1 TSL 3 BASIC15.77■□□□□ 0.12
TPM1P09493 ANAPC11-215ENST00000578550 599 ntAPPRIS P1 TSL 2 BASIC15.77■□□□□ 0.12
TPM1P09493 ANGPTL8-203ENST00000591200 504 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
TPM1P09493 TUBB6-213ENST00000591909 1017 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
TPM1P09493 AL132655.2-201ENST00000596276 594 ntBASIC15.77■□□□□ 0.12
TPM1P09493 POM121L14P-201ENST00000406100 1558 ntBASIC15.77■□□□□ 0.11
TPM1P09493 LINC02273-201ENST00000499452 1592 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
TPM1P09493 CHEK2-201ENST00000328354 1867 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.11
TPM1P09493 KIR3DL2-201ENST00000270442 1546 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.11
TPM1P09493 APBB3-202ENST00000356738 1804 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
TPM1P09493 GABPB1-201ENST00000220429 2726 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
TPM1P09493 ATP6V0A4-202ENST00000353492 2709 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
TPM1P09493 PFKP-203ENST00000381125 2654 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
TPM1P09493 AC007541.1-201ENST00000570282 1469 ntBASIC15.77■□□□□ 0.11
TPM1P09493 ACACA-237ENST00000616317 9961 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
TPM1P09493 NRG1-201ENST00000287842 2035 ntAPPRIS P4 TSL 1 (best) BASIC15.77■□□□□ 0.11
TPM1P09493 PSAP-202ENST00000394936 2872 ntAPPRIS P2 TSL 1 (best) BASIC15.77■□□□□ 0.11
TPM1P09493 MARK2P9-201ENST00000430958 1727 ntBASIC15.77■□□□□ 0.11
TPM1P09493 BTBD9-206ENST00000481247 8525 ntAPPRIS P1 TSL 5 BASIC15.77■□□□□ 0.11
TPM1P09493 LIX1L-201ENST00000604000 3975 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
TPM1P09493 FNTB-201ENST00000246166 2834 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
TPM1P09493 SLC9A3P3-201ENST00000457608 2229 ntBASIC15.76■□□□□ 0.11
TPM1P09493 NLGN3-201ENST00000358741 3046 ntAPPRIS P4 TSL 5 BASIC15.76■□□□□ 0.11
TPM1P09493 GSDMA-201ENST00000301659 2164 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
TPM1P09493 FOS-201ENST00000303562 2158 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
TPM1P09493 MAOA-204ENST00000542639 5438 ntTSL 2 BASIC15.76■□□□□ 0.11
TPM1P09493 TRPM2-203ENST00000397928 6221 ntAPPRIS P3 TSL 1 (best) BASIC15.76■□□□□ 0.11
TPM1P09493 POU2F2-204ENST00000526816 3218 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
TPM1P09493 CD27-201ENST00000266557 1338 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
TPM1P09493 TMEM121B-202ENST00000399875 3961 ntAPPRIS ALT2 TSL 2 BASIC15.76■□□□□ 0.11
TPM1P09493 DLX1-203ENST00000361725 2640 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
TPM1P09493 DLX3-201ENST00000434704 2602 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
TPM1P09493 CSF2RB-203ENST00000406230 2895 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
TPM1P09493 LRSAM1-201ENST00000300417 3146 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
TPM1P09493 AC009093.2-202ENST00000620513 2079 ntBASIC15.76■□□□□ 0.11
TPM1P09493 SNCAIP-203ENST00000379538 2588 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
TPM1P09493 EEF1B2-201ENST00000236957 844 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
TPM1P09493 PNKD-201ENST00000248451 758 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
TPM1P09493 HSPC324-201ENST00000411904 557 ntTSL 2 BASIC15.76■□□□□ 0.11
TPM1P09493 FLG-AS1-204ENST00000420707 906 ntTSL 5 BASIC15.76■□□□□ 0.11
TPM1P09493 GAS5-209ENST00000430245 723 ntTSL 3 BASIC15.76■□□□□ 0.11
TPM1P09493 AC099552.1-201ENST00000431083 744 ntTSL 5 BASIC15.76■□□□□ 0.11
TPM1P09493 C9orf41-AS1-201ENST00000455609 719 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
TPM1P09493 RNA5SP421-201ENST00000516864 134 ntBASIC15.76■□□□□ 0.11
TPM1P09493 AC109479.1-201ENST00000519603 624 ntTSL 2 BASIC15.76■□□□□ 0.11
TPM1P09493 NEU3-203ENST00000529024 581 ntTSL 3 BASIC15.76■□□□□ 0.11
TPM1P09493 ANO1-AS2-202ENST00000533327 498 ntTSL 3 BASIC15.76■□□□□ 0.11
TPM1P09493 NUBP2-208ENST00000565987 1049 ntTSL 5 BASIC15.76■□□□□ 0.11
TPM1P09493 AC092070.4-201ENST00000599803 507 ntTSL 5 BASIC15.76■□□□□ 0.11
TPM1P09493 AC004233.3-201ENST00000607794 1269 ntBASIC15.76■□□□□ 0.11
TPM1P09493 AC106028.4-201ENST00000614509 607 ntBASIC15.76■□□□□ 0.11
TPM1P09493 SUMO1-203ENST00000392246 1536 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
TPM1P09493 PPP1R1B-203ENST00000394267 1504 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
TPM1P09493 SLC7A7-201ENST00000285850 2263 ntAPPRIS P1 TSL 5 BASIC15.76■□□□□ 0.11
TPM1P09493 TTC14-202ENST00000382584 2274 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
TPM1P09493 SUPT7L-203ENST00000405491 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC15.76■□□□□ 0.11
TPM1P09493 MNT-201ENST00000174618 4996 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
TPM1P09493 LPCAT1-201ENST00000283415 3966 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
TPM1P09493 MAGED4B-211ENST00000497164 2482 ntAPPRIS P3 TSL 1 (best) BASIC15.76■□□□□ 0.11
TPM1P09493 MRPL17-201ENST00000288937 1969 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
TPM1P09493 SPIN3-245ENST00000640768 1722 ntTSL 5 BASIC15.76■□□□□ 0.11
TPM1P09493 MKRN5P-201ENST00000445263 1467 ntBASIC15.76■□□□□ 0.11
TPM1P09493 NRDC-202ENST00000354831 3895 ntAPPRIS P3 TSL 1 (best) BASIC15.76■□□□□ 0.11
TPM1P09493 NBAT1-201ENST00000566912 1940 ntTSL 2 BASIC15.76■□□□□ 0.11
TPM1P09493 TNF-208ENST00000449264 1676 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
TPM1P09493 TXNDC12-201ENST00000371626 2396 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
TPM1P09493 OPLAH-204ENST00000618853 4031 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
TPM1P09493 CIC-204ENST00000572681 8218 ntTSL 5 BASIC15.76■□□□□ 0.11
TPM1P09493 OSBP2-219ENST00000535268 3248 ntTSL 2 BASIC15.75■□□□□ 0.11
TPM1P09493 UNC13D-201ENST00000207549 4393 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
TPM1P09493 CALB1-201ENST00000265431 2533 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
TPM1P09493 ADAMTSL1-205ENST00000380548 8030 ntAPPRIS P1 TSL 5 BASIC15.75■□□□□ 0.11
TPM1P09493 TAF12-201ENST00000263974 1359 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
TPM1P09493 LGALS12-204ENST00000415491 1816 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
TPM1P09493 KCNS2-202ENST00000521839 4340 ntAPPRIS P1 TSL 5 BASIC15.75■□□□□ 0.11
TPM1P09493 L3MBTL1-204ENST00000418998 3365 ntAPPRIS ALT2 TSL 2 BASIC15.75■□□□□ 0.11
TPM1P09493 HPS3-201ENST00000296051 4665 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 47.8 ms