Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 IDH3B-212ENST00000613370 1400 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
SDCBPO00560 CU639417.3-201ENST00000624240 1404 ntBASIC12.19□□□□□ -0.46
SDCBPO00560 SMPDL3A-201ENST00000368440 1851 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
SDCBPO00560 SUOX-202ENST00000356124 2306 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
SDCBPO00560 ANKRD30BP2-201ENST00000435744 1610 ntBASIC12.19□□□□□ -0.46
SDCBPO00560 CACNA1G-214ENST00000505165 6633 ntAPPRIS ALT2 TSL 1 (best) BASIC12.18□□□□□ -0.46
SDCBPO00560 CACNA1G-220ENST00000507896 6600 ntAPPRIS ALT2 TSL 1 (best) BASIC12.18□□□□□ -0.46
SDCBPO00560 DMTN-220ENST00000523266 2735 ntTSL 5 BASIC12.18□□□□□ -0.46
SDCBPO00560 NAPEPLD-201ENST00000341533 4972 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
SDCBPO00560 CNN2-202ENST00000348419 2033 ntTSL 2 BASIC12.18□□□□□ -0.46
SDCBPO00560 SRRM1-201ENST00000323848 4011 ntAPPRIS P2 TSL 1 (best) BASIC12.18□□□□□ -0.46
SDCBPO00560 MYOM3-201ENST00000338909 2693 ntTSL 2 BASIC12.18□□□□□ -0.46
SDCBPO00560 AC007663.2-201ENST00000506039 2228 ntTSL 2 BASIC12.18□□□□□ -0.46
SDCBPO00560 NAA15-201ENST00000296543 6222 ntAPPRIS P2 TSL 1 (best) BASIC12.18□□□□□ -0.46
SDCBPO00560 SLC35F2-203ENST00000525071 3331 ntAPPRIS ALT2 TSL 2 BASIC12.18□□□□□ -0.46
SDCBPO00560 WDR45-224ENST00000485908 1301 ntTSL 5 BASIC12.18□□□□□ -0.46
SDCBPO00560 MLXIP-208ENST00000538698 5097 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
SDCBPO00560 BEND3P3-201ENST00000611030 2440 ntBASIC12.18□□□□□ -0.46
SDCBPO00560 AL354989.2-201ENST00000435838 1540 ntBASIC12.18□□□□□ -0.46
SDCBPO00560 SFTA3-204ENST00000518529 1531 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
SDCBPO00560 POU2F2-202ENST00000389341 6901 ntAPPRIS P3 TSL 1 (best) BASIC12.18□□□□□ -0.46
SDCBPO00560 BHLHE40-AS1-204ENST00000620618 2355 ntTSL 2 BASIC12.18□□□□□ -0.46
SDCBPO00560 TOM1L2-214ENST00000581396 5595 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
SDCBPO00560 TOLLIP-203ENST00000525159 3429 ntTSL 2 BASIC12.18□□□□□ -0.46
SDCBPO00560 MCRS1-201ENST00000343810 1928 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
SDCBPO00560 CFAP65-203ENST00000409865 2769 ntAPPRIS ALT2 TSL 2 BASIC12.18□□□□□ -0.46
SDCBPO00560 SCARB2-215ENST00000639145 4471 ntAPPRIS ALT1 TSL 5 BASIC12.18□□□□□ -0.46
SDCBPO00560 NDUFB7-201ENST00000215565 531 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
SDCBPO00560 HPS3-201ENST00000296051 4665 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
SDCBPO00560 EDF1-203ENST00000371649 790 ntTSL 2 BASIC12.18□□□□□ -0.46
SDCBPO00560 SNRPC-202ENST00000374017 1054 ntTSL 2 BASIC12.18□□□□□ -0.46
SDCBPO00560 AC092933.1-201ENST00000393644 945 ntBASIC12.18□□□□□ -0.46
SDCBPO00560 RN7SKP175-201ENST00000408472 289 ntBASIC12.18□□□□□ -0.46
SDCBPO00560 ARL6IP4-207ENST00000426960 910 ntAPPRIS ALT2 TSL 3 BASIC12.18□□□□□ -0.46
SDCBPO00560 AC016694.1-201ENST00000434179 700 ntBASIC12.18□□□□□ -0.46
SDCBPO00560 AL353747.3-201ENST00000454185 579 ntTSL 3 BASIC12.18□□□□□ -0.46
SDCBPO00560 DMKN-216ENST00000458071 510 ntAPPRIS ALT2 TSL 3 BASIC12.18□□□□□ -0.46
SDCBPO00560 USP32P1-208ENST00000506594 1164 ntBASIC12.18□□□□□ -0.46
SDCBPO00560 ANAPC15-208ENST00000538393 867 ntAPPRIS P3 TSL 2 BASIC12.18□□□□□ -0.46
SDCBPO00560 LINC02387-201ENST00000541749 868 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
SDCBPO00560 ANAPC15-214ENST00000543587 883 ntAPPRIS ALT1 TSL 1 (best) BASIC12.18□□□□□ -0.46
SDCBPO00560 TROAP-207ENST00000548311 623 ntAPPRIS ALT2 TSL 2 BASIC12.18□□□□□ -0.46
SDCBPO00560 AC106820.3-201ENST00000561653 397 ntBASIC12.18□□□□□ -0.46
SDCBPO00560 MIR3197-201ENST00000582241 73 ntBASIC12.18□□□□□ -0.46
SDCBPO00560 SPECC1-223ENST00000584527 940 ntTSL 3 BASIC12.18□□□□□ -0.46
SDCBPO00560 HIST1H2AB-201ENST00000615868 393 ntAPPRIS P1 BASIC12.18□□□□□ -0.46
SDCBPO00560 AC138951.2-201ENST00000623455 1161 ntBASIC12.18□□□□□ -0.46
SDCBPO00560 USP49-201ENST00000373006 3177 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
SDCBPO00560 FGFR1OP-201ENST00000349556 1484 ntAPPRIS ALT2 TSL 1 (best) BASIC12.18□□□□□ -0.46
SDCBPO00560 ADAM19-203ENST00000517905 3312 ntTSL 5 BASIC12.18□□□□□ -0.46
SDCBPO00560 SLC4A8-205ENST00000535225 2262 ntTSL 2 BASIC12.18□□□□□ -0.46
SDCBPO00560 STRIP2-202ENST00000435494 2866 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
SDCBPO00560 MYO9B-204ENST00000594824 7595 ntAPPRIS P1 TSL 5 BASIC12.18□□□□□ -0.46
SDCBPO00560 TESMIN-204ENST00000443940 3495 ntTSL 2 BASIC12.18□□□□□ -0.46
SDCBPO00560 AMER1-202ENST00000374869 3688 ntTSL 5 BASIC12.18□□□□□ -0.46
SDCBPO00560 BAIAP3-203ENST00000421665 3875 ntTSL 2 BASIC12.18□□□□□ -0.46
SDCBPO00560 TRMO-203ENST00000375119 1647 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
SDCBPO00560 TP73-207ENST00000378290 1831 ntTSL 2 BASIC12.18□□□□□ -0.46
SDCBPO00560 TBX6-202ENST00000395224 1803 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
SDCBPO00560 PDYN-AS1-201ENST00000446562 1802 ntTSL 2 BASIC12.18□□□□□ -0.46
SDCBPO00560 ACTN1-205ENST00000538545 2813 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
SDCBPO00560 POU2F2-204ENST00000526816 3218 ntAPPRIS ALT2 TSL 1 (best) BASIC12.18□□□□□ -0.46
SDCBPO00560 AP000347.1-201ENST00000417194 5004 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
SDCBPO00560 PAG1-201ENST00000220597 10744 ntAPPRIS P1 TSL 2 BASIC12.18□□□□□ -0.46
SDCBPO00560 AC073869.1-201ENST00000415574 2762 ntBASIC12.18□□□□□ -0.46
SDCBPO00560 PPT2-245ENST00000361568 1759 ntAPPRIS P4 TSL 1 (best) BASIC12.18□□□□□ -0.46
SDCBPO00560 BDH1-203ENST00000392379 3546 ntAPPRIS P1 TSL 5 BASIC12.17□□□□□ -0.46
SDCBPO00560 CAMKV-201ENST00000296471 2913 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
SDCBPO00560 ARAF-201ENST00000290277 2504 ntAPPRIS ALT1 TSL 1 (best) BASIC12.17□□□□□ -0.46
SDCBPO00560 SMIM12-206ENST00000521580 3454 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
SDCBPO00560 DUS2-201ENST00000358896 1933 ntAPPRIS P1 TSL 2 BASIC12.17□□□□□ -0.46
SDCBPO00560 BRAP-202ENST00000419234 4026 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
SDCBPO00560 LINC00665-206ENST00000590622 1749 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
SDCBPO00560 BCAP29-201ENST00000005259 4572 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
SDCBPO00560 TGOLN2-204ENST00000409015 2276 ntAPPRIS ALT2 TSL 1 (best) BASIC12.17□□□□□ -0.46
SDCBPO00560 TMEM121B-202ENST00000399875 3961 ntAPPRIS ALT2 TSL 2 BASIC12.17□□□□□ -0.46
SDCBPO00560 EML5-207ENST00000554922 9570 ntAPPRIS P1 TSL 5 BASIC12.17□□□□□ -0.46
SDCBPO00560 B4GALT3-202ENST00000367998 1871 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
SDCBPO00560 PPP2R1B-204ENST00000426998 1888 ntAPPRIS ALT2 TSL 2 BASIC12.17□□□□□ -0.46
SDCBPO00560 BIRC2-208ENST00000532672 2617 ntAPPRIS ALT2 TSL 5 BASIC12.17□□□□□ -0.46
SDCBPO00560 ZNF821-214ENST00000565601 1858 ntAPPRIS P1 TSL 2 BASIC12.17□□□□□ -0.46
SDCBPO00560 BMF-201ENST00000354670 4687 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
SDCBPO00560 DRD2-201ENST00000346454 2433 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
SDCBPO00560 GDPD5-215ENST00000533805 2424 ntTSL 2 BASIC12.17□□□□□ -0.46
SDCBPO00560 POPDC2-201ENST00000264231 1679 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
SDCBPO00560 PPHLN1-206ENST00000395580 1693 ntAPPRIS P3 TSL 1 (best) BASIC12.17□□□□□ -0.46
SDCBPO00560 BAG2-201ENST00000370693 6651 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
SDCBPO00560 KARS-201ENST00000302445 2005 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
SDCBPO00560 DBNDD2-201ENST00000357275 1036 ntAPPRIS P1 TSL 5 BASIC12.17□□□□□ -0.46
SDCBPO00560 AC011450.1-202ENST00000358234 573 ntTSL 4 BASIC12.17□□□□□ -0.46
SDCBPO00560 SFT2D1-201ENST00000361731 1079 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
SDCBPO00560 SS18L1-202ENST00000370848 1238 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
SDCBPO00560 PRTFDC1-203ENST00000376378 747 ntTSL 2 BASIC12.17□□□□□ -0.46
SDCBPO00560 DBI-203ENST00000393103 599 ntAPPRIS P4 TSL 1 (best) BASIC12.17□□□□□ -0.46
SDCBPO00560 PEX13-202ENST00000401576 1108 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
SDCBPO00560 AL355483.2-201ENST00000421637 675 ntTSL 3 BASIC12.17□□□□□ -0.46
SDCBPO00560 TMEM14DP-201ENST00000422205 345 ntBASIC12.17□□□□□ -0.46
SDCBPO00560 AL121983.1-201ENST00000424181 335 ntTSL 2 BASIC12.17□□□□□ -0.46
SDCBPO00560 FAM197Y7-201ENST00000432892 766 ntBASIC12.17□□□□□ -0.46
SDCBPO00560 KRT43P-201ENST00000434019 910 ntBASIC12.17□□□□□ -0.46
Retrieved 100 of 98,524 protein–RNA pairs in 42.1 ms