Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 SMIM6-201ENST00000556126 866 ntAPPRIS P1 TSL 2 BASIC13.93□□□□□ -0.18
CCDC3Q9BQI4 AC129507.4-201ENST00000570501 411 ntTSL 2 BASIC13.93□□□□□ -0.18
CCDC3Q9BQI4 NUDT4P2-201ENST00000578341 546 ntBASIC13.93□□□□□ -0.18
CCDC3Q9BQI4 STRADA-221ENST00000582137 1238 ntTSL 2 BASIC13.93□□□□□ -0.18
CCDC3Q9BQI4 BCL2L12-204ENST00000594157 620 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
CCDC3Q9BQI4 TAC3-211ENST00000615887 1120 ntAPPRIS P1 TSL 2 BASIC13.93□□□□□ -0.18
CCDC3Q9BQI4 AC025262.2-201ENST00000623975 1056 ntBASIC13.93□□□□□ -0.18
CCDC3Q9BQI4 AC005618.3-201ENST00000624928 458 ntBASIC13.93□□□□□ -0.18
CCDC3Q9BQI4 AP001184.1-201ENST00000637936 376 ntBASIC13.93□□□□□ -0.18
CCDC3Q9BQI4 POM121C-206ENST00000607367 3690 ntAPPRIS ALT2 TSL 5 BASIC13.93□□□□□ -0.18
CCDC3Q9BQI4 TNFRSF10A-201ENST00000221132 2714 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
CCDC3Q9BQI4 AC140479.7-201ENST00000636301 2332 ntBASIC13.93□□□□□ -0.18
CCDC3Q9BQI4 AC082651.3-201ENST00000474667 1947 ntTSL 2 BASIC13.93□□□□□ -0.18
CCDC3Q9BQI4 DDX31-204ENST00000372159 4577 ntAPPRIS P2 TSL 1 (best) BASIC13.93□□□□□ -0.18
CCDC3Q9BQI4 AC026904.3-201ENST00000636550 1530 ntTSL 5 BASIC13.93□□□□□ -0.18
CCDC3Q9BQI4 PCDHA5-201ENST00000529619 4157 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
CCDC3Q9BQI4 ZPBP2-202ENST00000377940 2177 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
CCDC3Q9BQI4 MICB-201ENST00000252229 2446 ntAPPRIS P3 TSL 1 (best) BASIC13.93□□□□□ -0.18
CCDC3Q9BQI4 BIRC5-203ENST00000374948 2446 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
CCDC3Q9BQI4 NDUFB6-203ENST00000379847 1366 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
CCDC3Q9BQI4 SERPINB9P1-202ENST00000545177 1375 ntTSL 3 BASIC13.93□□□□□ -0.18
CCDC3Q9BQI4 TRAF7-201ENST00000326181 3700 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
CCDC3Q9BQI4 COCH-203ENST00000460581 2688 ntTSL 2 BASIC13.93□□□□□ -0.18
CCDC3Q9BQI4 AC055854.1-203ENST00000521141 1630 ntTSL 5 BASIC13.93□□□□□ -0.18
CCDC3Q9BQI4 GTF3C2-214ENST00000622534 1858 ntTSL 5 BASIC13.93□□□□□ -0.18
CCDC3Q9BQI4 GTF2IRD1-201ENST00000265755 3430 ntAPPRIS P3 TSL 1 (best) BASIC13.93□□□□□ -0.18
CCDC3Q9BQI4 ATG4B-206ENST00000405546 3294 ntTSL 2 BASIC13.93□□□□□ -0.18
CCDC3Q9BQI4 ABCB8-221ENST00000498578 2350 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
CCDC3Q9BQI4 IGF2BP1-201ENST00000290341 8274 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
CCDC3Q9BQI4 ZDHHC4-204ENST00000396709 1485 ntAPPRIS P1 TSL 5 BASIC13.93□□□□□ -0.18
CCDC3Q9BQI4 USP51-201ENST00000500968 4407 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
CCDC3Q9BQI4 NAA60-203ENST00000414063 2619 ntAPPRIS P1 TSL 2 BASIC13.93□□□□□ -0.18
CCDC3Q9BQI4 DSCAML1-203ENST00000527706 6099 ntTSL 5 BASIC13.93□□□□□ -0.18
CCDC3Q9BQI4 FUT8-203ENST00000360689 5166 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
CCDC3Q9BQI4 NISCH-207ENST00000479054 5173 ntAPPRIS P3 TSL 1 (best) BASIC13.93□□□□□ -0.18
CCDC3Q9BQI4 RPL15-201ENST00000307839 2730 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
CCDC3Q9BQI4 CEMIP-202ENST00000356249 7297 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
CCDC3Q9BQI4 AGL-203ENST00000361915 7368 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
CCDC3Q9BQI4 AL353803.2-201ENST00000436510 1846 ntTSL 5 BASIC13.92□□□□□ -0.18
CCDC3Q9BQI4 AC232323.1-201ENST00000540724 2099 ntBASIC13.92□□□□□ -0.18
CCDC3Q9BQI4 LRRTM1-201ENST00000295057 2599 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
CCDC3Q9BQI4 SAFB-205ENST00000588852 2842 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
CCDC3Q9BQI4 PPRC1-203ENST00000413464 4580 ntTSL 2 BASIC13.92□□□□□ -0.18
CCDC3Q9BQI4 LGALS8-203ENST00000341872 2437 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
CCDC3Q9BQI4 MANEAL-201ENST00000329006 1930 ntTSL 2 BASIC13.92□□□□□ -0.18
CCDC3Q9BQI4 NIPAL3-202ENST00000339255 1676 ntTSL 5 BASIC13.92□□□□□ -0.18
CCDC3Q9BQI4 PORCN-204ENST00000361988 1672 ntAPPRIS ALT1 TSL 5 BASIC13.92□□□□□ -0.18
CCDC3Q9BQI4 MEIKIN-205ENST00000616644 1438 ntAPPRIS ALT2 TSL 5 BASIC13.92□□□□□ -0.18
CCDC3Q9BQI4 FECH-202ENST00000382873 2526 ntAPPRIS ALT2 TSL 2 BASIC13.92□□□□□ -0.18
CCDC3Q9BQI4 XPNPEP1-218ENST00000502935 2539 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
CCDC3Q9BQI4 ELF3-202ENST00000367283 2044 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
CCDC3Q9BQI4 RBBP4-204ENST00000414241 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC13.92□□□□□ -0.18
CCDC3Q9BQI4 LINC01671-201ENST00000419628 1775 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
CCDC3Q9BQI4 CHCHD7-202ENST00000355315 1535 ntTSL 2 BASIC13.92□□□□□ -0.18
CCDC3Q9BQI4 FARP2-201ENST00000264042 4051 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
CCDC3Q9BQI4 ATE1-201ENST00000224652 4930 ntAPPRIS P5 TSL 1 (best) BASIC13.92□□□□□ -0.18
CCDC3Q9BQI4 PIGL-201ENST00000225609 1137 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
CCDC3Q9BQI4 NPFF-201ENST00000267017 592 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
CCDC3Q9BQI4 SPACA3-201ENST00000269053 817 ntAPPRIS P2 TSL 1 (best) BASIC13.92□□□□□ -0.18
CCDC3Q9BQI4 TMEM208-201ENST00000304800 793 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
CCDC3Q9BQI4 PPA2-204ENST00000354147 667 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
CCDC3Q9BQI4 JTB-202ENST00000356648 1040 ntTSL 2 BASIC13.92□□□□□ -0.18
CCDC3Q9BQI4 TRBJ2-6-201ENST00000390418 53 ntAPPRIS P1 BASIC13.92□□□□□ -0.18
CCDC3Q9BQI4 HIST2H2BA-201ENST00000412169 381 ntBASIC13.92□□□□□ -0.18
CCDC3Q9BQI4 AC073869.2-201ENST00000417338 1026 ntBASIC13.92□□□□□ -0.18
CCDC3Q9BQI4 PPA2-205ENST00000432483 859 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
CCDC3Q9BQI4 AC092580.1-201ENST00000433998 658 ntBASIC13.92□□□□□ -0.18
CCDC3Q9BQI4 AC012362.1-201ENST00000434906 739 ntBASIC13.92□□□□□ -0.18
CCDC3Q9BQI4 MYL7-209ENST00000458240 791 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
CCDC3Q9BQI4 SIAH2-AS1-201ENST00000461943 441 ntTSL 4 BASIC13.92□□□□□ -0.18
CCDC3Q9BQI4 RPP40-203ENST00000464646 1042 ntTSL 5 BASIC13.92□□□□□ -0.18
CCDC3Q9BQI4 IGHV3-37-201ENST00000518544 340 ntBASIC13.92□□□□□ -0.18
CCDC3Q9BQI4 SORD2P-201ENST00000558556 1069 ntBASIC13.92□□□□□ -0.18
CCDC3Q9BQI4 LINC01225-202ENST00000562339 2113 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
CCDC3Q9BQI4 AC005586.2-201ENST00000563946 837 ntBASIC13.92□□□□□ -0.18
CCDC3Q9BQI4 MT3-203ENST00000565838 421 ntTSL 3 BASIC13.92□□□□□ -0.18
CCDC3Q9BQI4 LINC02176-201ENST00000569104 598 ntTSL 4 BASIC13.92□□□□□ -0.18
CCDC3Q9BQI4 SPACA3-205ENST00000580599 949 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
CCDC3Q9BQI4 MIR3180-2-201ENST00000581748 88 ntBASIC13.92□□□□□ -0.18
CCDC3Q9BQI4 RPL18A-204ENST00000599898 491 ntTSL 2 BASIC13.92□□□□□ -0.18
CCDC3Q9BQI4 AC021016.3-201ENST00000608367 477 ntBASIC13.92□□□□□ -0.18
CCDC3Q9BQI4 MIR6858-201ENST00000620733 67 ntBASIC13.92□□□□□ -0.18
CCDC3Q9BQI4 AC073911.3-201ENST00000624401 631 ntBASIC13.92□□□□□ -0.18
CCDC3Q9BQI4 AL161773.1-201ENST00000624845 863 ntBASIC13.92□□□□□ -0.18
CCDC3Q9BQI4 CMC2-224ENST00000630396 481 ntTSL 5 BASIC13.92□□□□□ -0.18
CCDC3Q9BQI4 IARS2-201ENST00000366922 3560 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
CCDC3Q9BQI4 MOCS1-201ENST00000340692 2747 ntAPPRIS P1 TSL 5 BASIC13.92□□□□□ -0.18
CCDC3Q9BQI4 PODNL1-204ENST00000538517 2744 ntTSL 2 BASIC13.92□□□□□ -0.18
CCDC3Q9BQI4 HIPK3-202ENST00000379016 7345 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
CCDC3Q9BQI4 ZNF7-203ENST00000525266 1874 ntTSL 2 BASIC13.92□□□□□ -0.18
CCDC3Q9BQI4 FAM214B-202ENST00000378557 3070 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
CCDC3Q9BQI4 TNFSF13-201ENST00000338784 1971 ntAPPRIS P3 TSL 1 (best) BASIC13.92□□□□□ -0.18
CCDC3Q9BQI4 HIF3A-206ENST00000472815 1709 ntTSL 2 BASIC13.92□□□□□ -0.18
CCDC3Q9BQI4 STX16-207ENST00000371141 4937 ntAPPRIS P3 TSL 2 BASIC13.92□□□□□ -0.18
CCDC3Q9BQI4 CHRFAM7A-201ENST00000299847 6220 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
CCDC3Q9BQI4 CCDC169-SOHLH2-201ENST00000511166 2051 ntAPPRIS P1 TSL 2 BASIC13.92□□□□□ -0.18
CCDC3Q9BQI4 AC123912.2-201ENST00000594927 2409 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
CCDC3Q9BQI4 CRHR2-208ENST00000506074 3109 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
CCDC3Q9BQI4 MAPK4-201ENST00000400384 4770 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
CCDC3Q9BQI4 AC215219.1-201ENST00000400706 1817 ntBASIC13.92□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 38.8 ms