Protein–RNA interactions for Protein: P55285

CDH6, Cadherin-6, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH6P55285 ATP13A1-202ENST00000357324 3861 ntAPPRIS P2 TSL 1 (best) BASIC14.86□□□□□ -0.03
CDH6P55285 MED22-209ENST00000610888 3867 ntAPPRIS ALT1 TSL 1 (best) BASIC14.86□□□□□ -0.03
CDH6P55285 MINDY4-201ENST00000265299 2733 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
CDH6P55285 AC015802.6-201ENST00000640006 5654 ntAPPRIS P1 TSL 2 BASIC14.86□□□□□ -0.03
CDH6P55285 FXYD5-201ENST00000342879 1580 ntAPPRIS P2 TSL 1 (best) BASIC14.85□□□□□ -0.03
CDH6P55285 ACVR1C-204ENST00000409680 1786 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
CDH6P55285 DLGAP4-202ENST00000340491 2392 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
CDH6P55285 NFATC4-207ENST00000553469 2566 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
CDH6P55285 DLL4-201ENST00000249749 3372 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
CDH6P55285 ZNF800-203ENST00000393313 4358 ntAPPRIS P1 TSL 5 BASIC14.85□□□□□ -0.03
CDH6P55285 SLC12A5-211ENST00000616933 6166 ntTSL 5 BASIC14.85□□□□□ -0.03
CDH6P55285 HDAC7-209ENST00000427332 3016 ntAPPRIS ALT2 TSL 5 BASIC14.85□□□□□ -0.03
CDH6P55285 MPZ-204ENST00000491222 1824 ntTSL 2 BASIC14.85□□□□□ -0.03
CDH6P55285 PKM-220ENST00000568459 1806 ntAPPRIS ALT1 TSL 1 (best) BASIC14.85□□□□□ -0.03
CDH6P55285 KIRREL1-204ENST00000368173 7519 ntTSL 2 BASIC14.85□□□□□ -0.03
CDH6P55285 SPPL2A-201ENST00000261854 7372 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
CDH6P55285 ERG-207ENST00000398919 1868 ntAPPRIS ALT1 TSL 1 (best) BASIC14.85□□□□□ -0.03
CDH6P55285 DPEP2-202ENST00000393847 1697 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
CDH6P55285 TNFRSF11A-201ENST00000269485 3591 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
CDH6P55285 MYLK-208ENST00000475616 5745 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
CDH6P55285 RPS3-201ENST00000278572 907 ntTSL 3 BASIC14.85□□□□□ -0.03
CDH6P55285 KRTAP21-2-201ENST00000333892 440 ntAPPRIS P1 BASIC14.85□□□□□ -0.03
CDH6P55285 GNRH2-204ENST00000380347 758 ntAPPRIS ALT2 TSL 5 BASIC14.85□□□□□ -0.03
CDH6P55285 LCMT1-202ENST00000380966 989 ntTSL 2 BASIC14.85□□□□□ -0.03
CDH6P55285 HMGA1P1-201ENST00000415560 1062 ntBASIC14.85□□□□□ -0.03
CDH6P55285 HVCN1-203ENST00000439744 1215 ntTSL 2 BASIC14.85□□□□□ -0.03
CDH6P55285 TMEM225B-203ENST00000453227 1041 ntAPPRIS P1 TSL 5 BASIC14.85□□□□□ -0.03
CDH6P55285 KLC4-205ENST00000458460 1251 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
CDH6P55285 FAM8A2P-201ENST00000528813 1142 ntBASIC14.85□□□□□ -0.03
CDH6P55285 AC084859.1-201ENST00000533002 670 ntTSL 4 BASIC14.85□□□□□ -0.03
CDH6P55285 EID1-202ENST00000560490 584 ntTSL 3 BASIC14.85□□□□□ -0.03
CDH6P55285 RN7SL163P-201ENST00000583100 276 ntBASIC14.85□□□□□ -0.03
CDH6P55285 AC092634.5-202ENST00000587736 928 ntTSL 2 BASIC14.85□□□□□ -0.03
CDH6P55285 AC010735.2-201ENST00000607970 584 ntTSL 4 BASIC14.85□□□□□ -0.03
CDH6P55285 PRKN-211ENST00000615065 261 ntTSL 5 BASIC14.85□□□□□ -0.03
CDH6P55285 AC006453.2-202ENST00000635968 827 ntTSL 5 BASIC14.85□□□□□ -0.03
CDH6P55285 AL033527.4-201ENST00000641026 673 ntBASIC14.85□□□□□ -0.03
CDH6P55285 AC004923.1-202ENST00000642106 209 ntBASIC14.85□□□□□ -0.03
CDH6P55285 DMTN-201ENST00000265800 2554 ntTSL 5 BASIC14.85□□□□□ -0.03
CDH6P55285 AFAP1-203ENST00000382543 2590 ntAPPRIS ALT1 TSL 5 BASIC14.85□□□□□ -0.03
CDH6P55285 DMTN-207ENST00000517305 2551 ntTSL 5 BASIC14.85□□□□□ -0.03
CDH6P55285 RIOK1-202ENST00000379834 2810 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
CDH6P55285 USP39-220ENST00000613444 2161 ntTSL 2 BASIC14.85□□□□□ -0.03
CDH6P55285 ZNF395-201ENST00000344423 4808 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
CDH6P55285 TRDMT1-203ENST00000377799 3527 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
CDH6P55285 ESPN-201ENST00000377828 3531 ntAPPRIS P2 TSL 1 (best) BASIC14.85□□□□□ -0.03
CDH6P55285 METTL13-203ENST00000367737 2865 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
CDH6P55285 LRP10-203ENST00000546834 1780 ntAPPRIS ALT2 TSL 5 BASIC14.85□□□□□ -0.03
CDH6P55285 AC021683.1-201ENST00000585798 1767 ntTSL 5 BASIC14.85□□□□□ -0.03
CDH6P55285 PRKCSH-212ENST00000591462 2209 ntAPPRIS ALT2 TSL 5 BASIC14.85□□□□□ -0.03
CDH6P55285 TRIM17-203ENST00000366697 2652 ntAPPRIS P1 TSL 2 BASIC14.85□□□□□ -0.03
CDH6P55285 CHIT1-201ENST00000255427 1598 ntTSL 2 BASIC14.85□□□□□ -0.03
CDH6P55285 EIF5-202ENST00000392715 3417 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
CDH6P55285 PLK2-201ENST00000274289 2960 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
CDH6P55285 ID2-203ENST00000396290 1362 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
CDH6P55285 B9D1-209ENST00000477478 1353 ntTSL 3 BASIC14.85□□□□□ -0.03
CDH6P55285 AC009690.1-201ENST00000379915 4374 ntAPPRIS P1 TSL 2 BASIC14.85□□□□□ -0.03
CDH6P55285 AGO3-201ENST00000246314 3211 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
CDH6P55285 ZNF596-201ENST00000308811 2783 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
CDH6P55285 AC004997.1-205ENST00000447976 1851 ntTSL 2 BASIC14.84□□□□□ -0.03
CDH6P55285 C14orf39-201ENST00000321731 2813 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
CDH6P55285 NEFH-201ENST00000310624 3783 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
CDH6P55285 TSEN2-202ENST00000402228 2149 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
CDH6P55285 SLC4A1-206ENST00000631130 1433 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
CDH6P55285 AC022028.2-201ENST00000474115 2619 ntTSL 2 BASIC14.84□□□□□ -0.03
CDH6P55285 ACTG1P17-202ENST00000560958 1662 ntTSL 2 BASIC14.84□□□□□ -0.03
CDH6P55285 SDC1-201ENST00000254351 3147 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
CDH6P55285 CASP8-202ENST00000264275 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
CDH6P55285 AP3M2-201ENST00000174653 3661 ntAPPRIS P1 TSL 5 BASIC14.84□□□□□ -0.03
CDH6P55285 ATAT1-206ENST00000376485 1476 ntAPPRIS ALT1 TSL 5 BASIC14.84□□□□□ -0.03
CDH6P55285 TFAM-204ENST00000487519 5414 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
CDH6P55285 STK3-218ENST00000617590 2485 ntTSL 5 BASIC14.84□□□□□ -0.03
CDH6P55285 CHRNA3-201ENST00000326828 3202 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
CDH6P55285 PCDH8-201ENST00000338862 3708 ntAPPRIS ALT1 TSL 1 (best) BASIC14.84□□□□□ -0.03
CDH6P55285 AMT-201ENST00000273588 2280 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
CDH6P55285 CALCOCO1-218ENST00000550804 2291 ntAPPRIS P2 TSL 1 (best) BASIC14.84□□□□□ -0.03
CDH6P55285 AC087521.1-201ENST00000501541 2045 ntTSL 2 BASIC14.84□□□□□ -0.03
CDH6P55285 TNNI1-201ENST00000336092 1750 ntAPPRIS P2 TSL 5 BASIC14.84□□□□□ -0.03
CDH6P55285 CNBP-208ENST00000504813 1549 ntAPPRIS ALT1 TSL 2 BASIC14.84□□□□□ -0.03
CDH6P55285 SLC4A7-211ENST00000445684 4061 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
CDH6P55285 CCL19-201ENST00000311925 687 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
CDH6P55285 TPRKB-202ENST00000318190 819 ntTSL 5 BASIC14.84□□□□□ -0.03
CDH6P55285 CFLAR-203ENST00000341222 1283 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
CDH6P55285 RUFY2-202ENST00000342616 983 ntTSL 2 BASIC14.84□□□□□ -0.03
CDH6P55285 JTB-202ENST00000356648 1040 ntTSL 2 BASIC14.84□□□□□ -0.03
CDH6P55285 PSME1-202ENST00000382708 1136 ntTSL 2 BASIC14.84□□□□□ -0.03
CDH6P55285 AC104073.2-201ENST00000453737 312 ntBASIC14.84□□□□□ -0.03
CDH6P55285 HOXB-AS3-206ENST00000474040 741 ntTSL 3 BASIC14.84□□□□□ -0.03
CDH6P55285 ROPN1-207ENST00000484329 566 ntTSL 3 BASIC14.84□□□□□ -0.03
CDH6P55285 AL132642.1-201ENST00000557646 553 ntTSL 4 BASIC14.84□□□□□ -0.03
CDH6P55285 AC009134.1-201ENST00000571939 443 ntTSL 3 BASIC14.84□□□□□ -0.03
CDH6P55285 AC090164.2-201ENST00000611487 516 ntBASIC14.84□□□□□ -0.03
CDH6P55285 AC091271.1-201ENST00000611877 1162 ntBASIC14.84□□□□□ -0.03
CDH6P55285 CR381653.1-201ENST00000622961 812 ntTSL 3 BASIC14.84□□□□□ -0.03
CDH6P55285 AC068587.8-201ENST00000641239 219 ntBASIC14.84□□□□□ -0.03
CDH6P55285 GTF2I-215ENST00000614986 4415 ntAPPRIS ALT1 TSL 1 (best) BASIC14.84□□□□□ -0.03
CDH6P55285 GTF2I-221ENST00000621734 4412 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
CDH6P55285 PTK7-205ENST00000352931 4023 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
CDH6P55285 ADAMTSL4-203ENST00000369039 4319 ntAPPRIS ALT2 TSL 5 BASIC14.84□□□□□ -0.03
CDH6P55285 PLCD1-204ENST00000463876 2963 ntAPPRIS ALT1 TSL 2 BASIC14.84□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 61.1 ms