Protein–RNA interactions for Protein: P49759

CLK1, Dual specificity protein kinase CLK1, humanhuman

Known RBP Predictions only

Length 484 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1P49759 C10orf35-201ENST00000373279 1065 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
CLK1P49759 NQO2-202ENST00000380430 1098 ntAPPRIS P1 TSL 5 BASIC13.53□□□□□ -0.24
CLK1P49759 CYB5R3-203ENST00000402438 1050 ntTSL 5 BASIC13.53□□□□□ -0.24
CLK1P49759 POM121L8P-201ENST00000417732 1281 ntBASIC13.53□□□□□ -0.24
CLK1P49759 ADAMTSL1-210ENST00000431052 824 ntTSL 2 BASIC13.53□□□□□ -0.24
CLK1P49759 POM121L9P-203ENST00000441984 1285 ntBASIC13.53□□□□□ -0.24
CLK1P49759 AC005865.1-202ENST00000543036 641 ntTSL 2 BASIC13.53□□□□□ -0.24
CLK1P49759 TROAP-207ENST00000548311 623 ntAPPRIS ALT2 TSL 2 BASIC13.53□□□□□ -0.24
CLK1P49759 AC138123.2-203ENST00000552451 653 ntTSL 3 BASIC13.53□□□□□ -0.24
CLK1P49759 MRPL52-216ENST00000557221 922 ntTSL 2 BASIC13.53□□□□□ -0.24
CLK1P49759 AC099482.1-201ENST00000563471 481 ntTSL 2 BASIC13.53□□□□□ -0.24
CLK1P49759 MAN2C1-216ENST00000563622 2961 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
CLK1P49759 AC126696.2-201ENST00000563687 522 ntTSL 3 BASIC13.53□□□□□ -0.24
CLK1P49759 CMTM3-212ENST00000566121 572 ntTSL 3 BASIC13.53□□□□□ -0.24
CLK1P49759 FLT3LG-205ENST00000596435 1034 ntTSL 5 BASIC13.53□□□□□ -0.24
CLK1P49759 AC073389.2-202ENST00000607450 441 ntTSL 5 BASIC13.53□□□□□ -0.24
CLK1P49759 LARP4-220ENST00000615080 856 ntTSL 5 BASIC13.53□□□□□ -0.24
CLK1P49759 AL162274.1-201ENST00000617191 1098 ntBASIC13.53□□□□□ -0.24
CLK1P49759 ETV2-208ENST00000621247 941 ntTSL 5 BASIC13.53□□□□□ -0.24
CLK1P49759 PCDHGB3-201ENST00000576222 4727 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
CLK1P49759 USP22-206ENST00000537526 4976 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
CLK1P49759 NTM-202ENST00000374786 3190 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
CLK1P49759 TATDN3-201ENST00000366973 2321 ntAPPRIS ALT1 TSL 1 (best) BASIC13.53□□□□□ -0.24
CLK1P49759 TRIM4-203ENST00000355947 3383 ntAPPRIS P4 TSL 1 (best) BASIC13.53□□□□□ -0.24
CLK1P49759 AC239799.1-201ENST00000612520 3411 ntAPPRIS P1 TSL 5 BASIC13.53□□□□□ -0.24
CLK1P49759 DNAJC19-201ENST00000382564 1453 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
CLK1P49759 DTX2P1-UPK3BP1-PMS2P11-203ENST00000636308 4646 ntTSL 5 BASIC13.53□□□□□ -0.24
CLK1P49759 MKNK1-203ENST00000371945 2618 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
CLK1P49759 GATAD2A-203ENST00000404158 5776 ntAPPRIS ALT1 TSL 2 BASIC13.53□□□□□ -0.24
CLK1P49759 AC098936.1-201ENST00000442318 2885 ntTSL 2 BASIC13.53□□□□□ -0.24
CLK1P49759 UBE2I-204ENST00000397515 3109 ntAPPRIS P1 TSL 3 BASIC13.53□□□□□ -0.24
CLK1P49759 PCDHB18P-202ENST00000526308 3197 ntBASIC13.53□□□□□ -0.24
CLK1P49759 RANBP17-219ENST00000523189 4588 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
CLK1P49759 TNS1-205ENST00000419504 5921 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.24
CLK1P49759 TNS1-207ENST00000430930 5900 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.24
CLK1P49759 OSTM1-AS1-202ENST00000441184 3334 ntTSL 1 (best) BASIC13.52□□□□□ -0.24
CLK1P49759 AL590644.1-201ENST00000412427 4676 ntTSL 4 BASIC13.52□□□□□ -0.24
CLK1P49759 MLLT3-210ENST00000630269 2040 ntAPPRIS ALT1 TSL 2 BASIC13.52□□□□□ -0.24
CLK1P49759 MOGAT3-201ENST00000223114 2132 ntAPPRIS P2 TSL 1 (best) BASIC13.52□□□□□ -0.24
CLK1P49759 GATB-201ENST00000263985 2385 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
CLK1P49759 MSTO1-201ENST00000245564 2431 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
CLK1P49759 BEND3P3-201ENST00000611030 2440 ntBASIC13.52□□□□□ -0.24
CLK1P49759 ARPIN-201ENST00000357484 7591 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
CLK1P49759 CD34-203ENST00000367036 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.24
CLK1P49759 SEZ6L-203ENST00000360929 6307 ntTSL 1 (best) BASIC13.52□□□□□ -0.24
CLK1P49759 RRBP1-201ENST00000246043 4737 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.24
CLK1P49759 SMARCA4-204ENST00000444061 4938 ntAPPRIS ALT1 TSL 5 BASIC13.52□□□□□ -0.24
CLK1P49759 FOXM1-210ENST00000627656 3487 ntAPPRIS ALT1 TSL 1 (best) BASIC13.52□□□□□ -0.25
CLK1P49759 SLC1A1-201ENST00000262352 3722 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
CLK1P49759 ZBTB12BP-201ENST00000314232 1122 ntBASIC13.52□□□□□ -0.25
CLK1P49759 CNN2P8-201ENST00000421872 913 ntBASIC13.52□□□□□ -0.25
CLK1P49759 AL354761.2-202ENST00000430816 546 ntAPPRIS P1 TSL 5 BASIC13.52□□□□□ -0.25
CLK1P49759 C14orf178-202ENST00000439131 632 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.25
CLK1P49759 GGTLC2-202ENST00000448514 678 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
CLK1P49759 HEBP2-202ENST00000448741 661 ntTSL 5 BASIC13.52□□□□□ -0.25
CLK1P49759 AC007551.1-201ENST00000457394 519 ntBASIC13.52□□□□□ -0.25
CLK1P49759 DMKN-216ENST00000458071 510 ntAPPRIS ALT2 TSL 3 BASIC13.52□□□□□ -0.25
CLK1P49759 TMEM14B-204ENST00000461342 559 ntTSL 2 BASIC13.52□□□□□ -0.25
CLK1P49759 FAM153B-214ENST00000512862 1071 ntAPPRIS ALT2 TSL 2 BASIC13.52□□□□□ -0.25
CLK1P49759 COX14-203ENST00000550487 739 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
CLK1P49759 IFT20-209ENST00000579419 787 ntAPPRIS ALT1 TSL 3 BASIC13.52□□□□□ -0.25
CLK1P49759 SPATA21-206ENST00000612240 603 ntTSL 5 BASIC13.52□□□□□ -0.25
CLK1P49759 AC138466.3-201ENST00000619983 221 ntBASIC13.52□□□□□ -0.25
CLK1P49759 AL138725.1-201ENST00000407347 1314 ntBASIC13.52□□□□□ -0.25
CLK1P49759 CACNA1G-222ENST00000510366 6714 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.25
CLK1P49759 CACNA1G-227ENST00000513964 6735 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.25
CLK1P49759 GOLGA6L10-209ENST00000621197 4160 ntAPPRIS ALT2 TSL 5 BASIC13.52□□□□□ -0.25
CLK1P49759 PPP1R1B-205ENST00000579000 1466 ntTSL 5 BASIC13.52□□□□□ -0.25
CLK1P49759 AC020910.6-201ENST00000623084 1459 ntBASIC13.52□□□□□ -0.25
CLK1P49759 AFDN-206ENST00000392112 7459 ntTSL 5 BASIC13.52□□□□□ -0.25
CLK1P49759 PAAF1-207ENST00000536003 1639 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
CLK1P49759 SIGLEC9-201ENST00000250360 1690 ntAPPRIS P3 TSL 1 (best) BASIC13.52□□□□□ -0.25
CLK1P49759 ALG3-207ENST00000455059 1697 ntTSL 5 BASIC13.52□□□□□ -0.25
CLK1P49759 PRSS54-201ENST00000219301 1810 ntAPPRIS P1 TSL 5 BASIC13.52□□□□□ -0.25
CLK1P49759 YWHAE-208ENST00000571732 1818 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
CLK1P49759 MUC1-228ENST00000620103 1811 ntAPPRIS ALT2 TSL 5 BASIC13.52□□□□□ -0.25
CLK1P49759 ERG-207ENST00000398919 1868 ntAPPRIS ALT1 TSL 1 (best) BASIC13.52□□□□□ -0.25
CLK1P49759 PATL2-207ENST00000560775 1913 ntAPPRIS P3 TSL 5 BASIC13.52□□□□□ -0.25
CLK1P49759 ZNF417-203ENST00000595559 1975 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.25
CLK1P49759 AGAP5-201ENST00000374094 2394 ntAPPRIS P2 TSL 1 (best) BASIC13.52□□□□□ -0.25
CLK1P49759 MAP7-205ENST00000544465 2744 ntAPPRIS ALT2 TSL 2 BASIC13.52□□□□□ -0.25
CLK1P49759 LRRFIP2-202ENST00000354379 2821 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
CLK1P49759 KIF3C-202ENST00000405914 3180 ntAPPRIS P1 TSL 5 BASIC13.52□□□□□ -0.25
CLK1P49759 KIF3A-201ENST00000378735 3266 ntAPPRIS ALT1 TSL 1 (best) BASIC13.52□□□□□ -0.25
CLK1P49759 CAMSAP3-201ENST00000160298 3889 ntAPPRIS P3 TSL 2 BASIC13.52□□□□□ -0.25
CLK1P49759 DNM3-202ENST00000367731 7613 ntAPPRIS P3 TSL 1 (best) BASIC13.51□□□□□ -0.25
CLK1P49759 ADCY7-202ENST00000394697 6213 ntAPPRIS P1 TSL 5 BASIC13.51□□□□□ -0.25
CLK1P49759 LIX1L-201ENST00000604000 3975 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
CLK1P49759 RIN3-212ENST00000620541 3617 ntAPPRIS ALT2 TSL 5 BASIC13.51□□□□□ -0.25
CLK1P49759 DLL4-201ENST00000249749 3372 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
CLK1P49759 UNC5CL-201ENST00000244565 3136 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
CLK1P49759 TJAP1-208ENST00000438588 2716 ntTSL 5 BASIC13.51□□□□□ -0.25
CLK1P49759 TTC38-201ENST00000381031 2610 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
CLK1P49759 SLC8A3-205ENST00000394330 2622 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
CLK1P49759 CPNE5-202ENST00000393189 2542 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
CLK1P49759 DLX1-201ENST00000341900 2130 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
CLK1P49759 ILK-201ENST00000299421 1802 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
CLK1P49759 SALL4P5-201ENST00000419001 1760 ntBASIC13.51□□□□□ -0.25
CLK1P49759 ARMC8-220ENST00000489213 1714 ntTSL 5 BASIC13.51□□□□□ -0.25
CLK1P49759 LINC00668-205ENST00000581571 1748 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
Retrieved 100 of 98,524 protein–RNA pairs in 176 ms