Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 MLLT3-210ENST00000630269 2040 ntAPPRIS ALT1 TSL 2 BASIC11.94□□□□□ -0.5
HOXA1P49639 PSAP-201ENST00000394934 2830 ntAPPRIS ALT1 TSL 5 BASIC11.94□□□□□ -0.5
HOXA1P49639 MNT-201ENST00000174618 4996 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
HOXA1P49639 TPX2-202ENST00000340513 3605 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
HOXA1P49639 INPP5J-201ENST00000331075 3347 ntAPPRIS ALT2 TSL 2 BASIC11.94□□□□□ -0.5
HOXA1P49639 DLEU2-201ENST00000235290 1739 ntTSL 5 BASIC11.94□□□□□ -0.5
HOXA1P49639 TJAP1-202ENST00000372444 2778 ntAPPRIS P1 TSL 5 BASIC11.94□□□□□ -0.5
HOXA1P49639 TJAP1-203ENST00000372445 2751 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
HOXA1P49639 RNF43-201ENST00000407977 5516 ntAPPRIS P1 TSL 2 BASIC11.94□□□□□ -0.5
HOXA1P49639 PEX12-201ENST00000225873 2675 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
HOXA1P49639 MICAL1-208ENST00000630715 3678 ntTSL 2 BASIC11.93□□□□□ -0.5
HOXA1P49639 SCAF4-201ENST00000286835 4193 ntAPPRIS P3 TSL 1 (best) BASIC11.93□□□□□ -0.5
HOXA1P49639 CCDC86-201ENST00000227520 1893 ntAPPRIS P2 TSL 1 (best) BASIC11.93□□□□□ -0.5
HOXA1P49639 GATB-201ENST00000263985 2385 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
HOXA1P49639 SRD5A1-201ENST00000274192 7132 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
HOXA1P49639 TRPC6-201ENST00000344327 4612 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
HOXA1P49639 CTRC-201ENST00000375943 3147 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
HOXA1P49639 ATL2-204ENST00000406122 2864 ntTSL 5 BASIC11.93□□□□□ -0.5
HOXA1P49639 HNRNPH1-216ENST00000510411 2105 ntTSL 5 BASIC11.93□□□□□ -0.5
HOXA1P49639 CCND3-215ENST00000511642 2394 ntTSL 2 BASIC11.93□□□□□ -0.5
HOXA1P49639 MPP2-214ENST00000523501 2121 ntAPPRIS P1 TSL 2 BASIC11.93□□□□□ -0.5
HOXA1P49639 AGPAT3-202ENST00000327505 3589 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
HOXA1P49639 AGPAT3-204ENST00000398061 3595 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
HOXA1P49639 ROBO1-213ENST00000618846 7483 ntTSL 5 BASIC11.93□□□□□ -0.5
HOXA1P49639 GUCY1B3-204ENST00000505154 2316 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
HOXA1P49639 PCBP2-202ENST00000359462 1814 ntAPPRIS ALT1 TSL 1 (best) BASIC11.93□□□□□ -0.5
HOXA1P49639 HNRNPR-212ENST00000606561 1837 ntTSL 2 BASIC11.93□□□□□ -0.5
HOXA1P49639 B3GAT1-202ENST00000392580 3522 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
HOXA1P49639 GPC4-201ENST00000370828 4960 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
HOXA1P49639 YIPF3-202ENST00000372422 1576 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
HOXA1P49639 ASAH2B-202ENST00000374007 3715 ntAPPRIS P1 TSL 3 BASIC11.93□□□□□ -0.5
HOXA1P49639 HERC6-202ENST00000273960 3473 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
HOXA1P49639 RXRG-204ENST00000619224 2252 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
HOXA1P49639 CIC-204ENST00000572681 8218 ntTSL 5 BASIC11.93□□□□□ -0.5
HOXA1P49639 VMP1-201ENST00000262291 2712 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
HOXA1P49639 HORMAD1-201ENST00000322343 1771 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
HOXA1P49639 RN7SL832P-201ENST00000607781 1756 ntBASIC11.93□□□□□ -0.5
HOXA1P49639 FMNL3-205ENST00000550488 4120 ntAPPRIS ALT2 TSL 5 BASIC11.93□□□□□ -0.5
HOXA1P49639 FAM71E2-201ENST00000424985 3191 ntAPPRIS P1 TSL 5 BASIC11.93□□□□□ -0.5
HOXA1P49639 C2-209ENST00000452323 1999 ntTSL 2 BASIC11.93□□□□□ -0.5
HOXA1P49639 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC11.93□□□□□ -0.5
HOXA1P49639 UBE2G2-201ENST00000330942 721 ntTSL 3 BASIC11.93□□□□□ -0.5
HOXA1P49639 RNU1-114P-201ENST00000365297 166 ntBASIC11.93□□□□□ -0.5
HOXA1P49639 FAM19A3-202ENST00000369630 1282 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
HOXA1P49639 VMA21-202ENST00000370361 693 ntTSL 5 BASIC11.93□□□□□ -0.5
HOXA1P49639 YWHAZ-203ENST00000395951 964 ntAPPRIS P1 TSL 2 BASIC11.93□□□□□ -0.5
HOXA1P49639 DERL3-204ENST00000406855 1063 ntAPPRIS ALT2 TSL 1 (best) BASIC11.93□□□□□ -0.5
HOXA1P49639 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC11.93□□□□□ -0.5
HOXA1P49639 SPATA3-204ENST00000433428 856 ntAPPRIS P2 TSL 1 (best) BASIC11.93□□□□□ -0.5
HOXA1P49639 RN7SL399P-201ENST00000471648 279 ntBASIC11.93□□□□□ -0.5
HOXA1P49639 UBE2V2-201ENST00000517630 612 ntTSL 4 BASIC11.93□□□□□ -0.5
HOXA1P49639 EVX1-AS-202ENST00000519050 576 ntTSL 4 BASIC11.93□□□□□ -0.5
HOXA1P49639 AC005520.2-201ENST00000556194 573 ntTSL 2 BASIC11.93□□□□□ -0.5
HOXA1P49639 AC130456.4-201ENST00000568635 665 ntTSL 2 BASIC11.93□□□□□ -0.5
HOXA1P49639 LINC01975-201ENST00000571890 549 ntTSL 4 BASIC11.93□□□□□ -0.5
HOXA1P49639 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC11.93□□□□□ -0.5
HOXA1P49639 AC067852.1-201ENST00000585572 594 ntTSL 4 BASIC11.93□□□□□ -0.5
HOXA1P49639 ZNF667-AS1-204ENST00000588158 921 ntTSL 3 BASIC11.93□□□□□ -0.5
HOXA1P49639 AC008738.7-201ENST00000609744 511 ntBASIC11.93□□□□□ -0.5
HOXA1P49639 ALDH3B1-203ENST00000612297 1231 ntTSL 3 BASIC11.93□□□□□ -0.5
HOXA1P49639 STXBP6-202ENST00000396700 4021 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
HOXA1P49639 BX255923.2-202ENST00000620833 2874 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
HOXA1P49639 MARVELD2-201ENST00000325631 2153 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
HOXA1P49639 PIGG-205ENST00000503111 2629 ntTSL 2 BASIC11.93□□□□□ -0.5
HOXA1P49639 SULF1-202ENST00000402687 4891 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
HOXA1P49639 CASP8-202ENST00000264275 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC11.93□□□□□ -0.5
HOXA1P49639 C11orf16-201ENST00000326053 1908 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
HOXA1P49639 MFAP4-202ENST00000395592 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC11.93□□□□□ -0.5
HOXA1P49639 SLC5A11-202ENST00000424767 2399 ntTSL 2 BASIC11.93□□□□□ -0.5
HOXA1P49639 AC006001.3-201ENST00000449307 7092 ntTSL 3 BASIC11.93□□□□□ -0.5
HOXA1P49639 CNTNAP5-202ENST00000431078 5284 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
HOXA1P49639 NEK4-202ENST00000383721 2576 ntAPPRIS ALT2 TSL 1 (best) BASIC11.93□□□□□ -0.5
HOXA1P49639 ACTL8-202ENST00000617065 1670 ntAPPRIS P1 TSL 2 BASIC11.93□□□□□ -0.5
HOXA1P49639 USP40-201ENST00000251722 5692 ntAPPRIS ALT2 TSL 5 BASIC11.93□□□□□ -0.5
HOXA1P49639 WTIP-202ENST00000590071 13665 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
HOXA1P49639 NAGK-202ENST00000418807 2343 ntTSL 5 BASIC11.93□□□□□ -0.5
HOXA1P49639 LAP3-210ENST00000606142 1876 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
HOXA1P49639 SIAE-201ENST00000263593 5583 ntAPPRIS P3 TSL 1 (best) BASIC11.93□□□□□ -0.5
HOXA1P49639 ARAP1-204ENST00000393609 5145 ntAPPRIS ALT2 TSL 2 BASIC11.93□□□□□ -0.5
HOXA1P49639 EPB41L5-205ENST00000452780 6410 ntTSL 5 BASIC11.93□□□□□ -0.5
HOXA1P49639 GABARAP-201ENST00000302386 1634 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
HOXA1P49639 LARP7-202ENST00000344442 2286 ntAPPRIS P1 TSL 2 BASIC11.93□□□□□ -0.5
HOXA1P49639 ASPH-202ENST00000379449 1603 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
HOXA1P49639 CAPN3-207ENST00000397200 1643 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
HOXA1P49639 SMOC2-202ENST00000356284 3117 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
HOXA1P49639 ELMOD3-206ENST00000409890 2492 ntAPPRIS P1 TSL 5 BASIC11.93□□□□□ -0.5
HOXA1P49639 NR3C2-203ENST00000358102 5893 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
HOXA1P49639 CACNB1-202ENST00000394303 3742 ntAPPRIS P3 TSL 1 (best) BASIC11.93□□□□□ -0.5
HOXA1P49639 MSH5-204ENST00000375755 3094 ntAPPRIS P3 TSL 1 (best) BASIC11.92□□□□□ -0.5
HOXA1P49639 DDR1-262ENST00000508312 3073 ntAPPRIS ALT2 TSL 2 BASIC11.92□□□□□ -0.5
HOXA1P49639 POC5-202ENST00000428202 2229 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
HOXA1P49639 AC015712.2-201ENST00000560351 3688 ntTSL 2 BASIC11.92□□□□□ -0.5
HOXA1P49639 AC022144.1-201ENST00000602255 1580 ntBASIC11.92□□□□□ -0.5
HOXA1P49639 PIGT-203ENST00000372689 1971 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
HOXA1P49639 BEND6-202ENST00000370746 2379 ntAPPRIS P1 TSL 5 BASIC11.92□□□□□ -0.5
HOXA1P49639 AGAP9-201ENST00000452145 2387 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
HOXA1P49639 ZC2HC1A-201ENST00000263849 3352 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
HOXA1P49639 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC11.92□□□□□ -0.5
HOXA1P49639 SIGLEC6-201ENST00000343300 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC11.92□□□□□ -0.5
HOXA1P49639 MYADML-201ENST00000474610 2147 ntBASIC11.92□□□□□ -0.5
Retrieved 100 of 98,524 protein–RNA pairs in 107.9 ms