Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 PGAM5-202ENST00000454808 1084 ntTSL 3 BASIC16.54■□□□□ 0.24
BRCA1P38398 AC067942.1-202ENST00000471756 1057 ntBASIC16.54■□□□□ 0.24
BRCA1P38398 STEAP2-AS1-202ENST00000478318 627 ntTSL 3 BASIC16.54■□□□□ 0.24
BRCA1P38398 H1FOO-202ENST00000503977 881 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
BRCA1P38398 FAM138D-201ENST00000504074 1187 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
BRCA1P38398 RASGRF2-AS1-202ENST00000505694 535 ntTSL 3 BASIC16.54■□□□□ 0.24
BRCA1P38398 FAM138E-201ENST00000507796 1187 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
BRCA1P38398 TMEM241-208ENST00000542162 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
BRCA1P38398 MIR22HG-206ENST00000573127 899 ntTSL 3 BASIC16.54■□□□□ 0.24
BRCA1P38398 MIEF2-206ENST00000578174 589 ntTSL 4 BASIC16.54■□□□□ 0.24
BRCA1P38398 MIR4539-201ENST00000579784 60 ntBASIC16.54■□□□□ 0.24
BRCA1P38398 TIMM23-201ENST00000580018 1222 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
BRCA1P38398 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
BRCA1P38398 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
BRCA1P38398 ZNF33A-205ENST00000469037 1530 ntTSL 5 BASIC16.54■□□□□ 0.24
BRCA1P38398 ETNPPL-202ENST00000411864 2028 ntAPPRIS ALT1 TSL 1 (best) BASIC16.54■□□□□ 0.24
BRCA1P38398 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC16.54■□□□□ 0.24
BRCA1P38398 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
BRCA1P38398 NR2E3-203ENST00000621098 2064 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
BRCA1P38398 KCNJ11-204ENST00000528731 2146 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
BRCA1P38398 AL157832.2-205ENST00000597245 1649 ntBASIC16.54■□□□□ 0.24
BRCA1P38398 ILF3-210ENST00000588657 2697 ntAPPRIS ALT2 TSL 5 BASIC16.54■□□□□ 0.24
BRCA1P38398 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
BRCA1P38398 TEX44-201ENST00000313965 1383 ntAPPRIS P1 BASIC16.54■□□□□ 0.24
BRCA1P38398 ASH2L-212ENST00000545394 2808 ntTSL 2 BASIC16.54■□□□□ 0.24
BRCA1P38398 SOWAHB-201ENST00000334306 3220 ntAPPRIS P1 BASIC16.54■□□□□ 0.24
BRCA1P38398 PHF3-209ENST00000509330 2969 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
BRCA1P38398 FAM25A-201ENST00000343959 345 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
BRCA1P38398 SGCA-202ENST00000344627 1057 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
BRCA1P38398 IL1RN-205ENST00000409930 848 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
BRCA1P38398 IL6RP1-201ENST00000417848 1273 ntBASIC16.54■□□□□ 0.24
BRCA1P38398 AC105446.1-201ENST00000441882 407 ntTSL 3 BASIC16.54■□□□□ 0.24
BRCA1P38398 UBA52-213ENST00000599551 707 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
BRCA1P38398 AC090950.1-202ENST00000605733 644 ntBASIC16.54■□□□□ 0.24
BRCA1P38398 Metazoa_SRP.152-201ENST00000614413 286 ntBASIC16.54■□□□□ 0.24
BRCA1P38398 Metazoa_SRP.47-201ENST00000616942 279 ntBASIC16.54■□□□□ 0.24
BRCA1P38398 CD74-201ENST00000009530 981 ntAPPRIS P2 TSL 2 BASIC16.54■□□□□ 0.24
BRCA1P38398 NICN1-201ENST00000273598 2616 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
BRCA1P38398 ZMYM3-203ENST00000373981 1841 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
BRCA1P38398 TMEM186-201ENST00000333050 1448 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
BRCA1P38398 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC16.54■□□□□ 0.24
BRCA1P38398 Z98885.2-201ENST00000565177 1567 ntTSL 2 BASIC16.54■□□□□ 0.24
BRCA1P38398 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
BRCA1P38398 MINDY1-201ENST00000312210 2400 ntTSL 2 BASIC16.54■□□□□ 0.24
BRCA1P38398 GSDMA-201ENST00000301659 2164 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
BRCA1P38398 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC16.53■□□□□ 0.24
BRCA1P38398 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
BRCA1P38398 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC16.53■□□□□ 0.24
BRCA1P38398 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
BRCA1P38398 CCER1-201ENST00000358859 2962 ntAPPRIS P1 BASIC16.53■□□□□ 0.24
BRCA1P38398 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
BRCA1P38398 AC092506.1-201ENST00000634580 2275 ntTSL 5 BASIC16.53■□□□□ 0.24
BRCA1P38398 USP35-204ENST00000530267 2419 ntTSL 2 BASIC16.53■□□□□ 0.24
BRCA1P38398 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
BRCA1P38398 LY6G6F-201ENST00000375832 920 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
BRCA1P38398 CLDN10-AS1-201ENST00000416909 895 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
BRCA1P38398 DHRSX-IT1-201ENST00000437244 651 ntTSL 5 BASIC16.53■□□□□ 0.24
BRCA1P38398 AC136698.1-201ENST00000558110 546 ntTSL 4 BASIC16.53■□□□□ 0.24
BRCA1P38398 AC048382.4-201ENST00000559065 546 ntTSL 4 BASIC16.53■□□□□ 0.24
BRCA1P38398 TEX38-204ENST00000564373 637 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
BRCA1P38398 BLVRB-202ENST00000595483 649 ntTSL 2 BASIC16.53■□□□□ 0.24
BRCA1P38398 FAM90A28P-201ENST00000596881 489 ntTSL 5 BASIC16.53■□□□□ 0.24
BRCA1P38398 SLC27A1-201ENST00000252595 3594 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
BRCA1P38398 DNAH14-204ENST00000366849 2215 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
BRCA1P38398 ASAH1-210ENST00000520781 2245 ntTSL 2 BASIC16.53■□□□□ 0.24
BRCA1P38398 AC139795.2-201ENST00000499900 1751 ntTSL 2 BASIC16.53■□□□□ 0.24
BRCA1P38398 MIR100HG-219ENST00000533109 1794 ntTSL 5 BASIC16.53■□□□□ 0.24
BRCA1P38398 BX088651.4-202ENST00000428895 1479 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
BRCA1P38398 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
BRCA1P38398 PCSK2-205ENST00000536609 2275 ntTSL 2 BASIC16.53■□□□□ 0.24
BRCA1P38398 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
BRCA1P38398 DUSP18-201ENST00000334679 2479 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
BRCA1P38398 AC009053.1-204ENST00000429810 2355 ntTSL 2 BASIC16.53■□□□□ 0.24
BRCA1P38398 ADAM9-206ENST00000481513 2387 ntTSL 2 BASIC16.53■□□□□ 0.24
BRCA1P38398 SLC32A1-201ENST00000217420 2574 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
BRCA1P38398 PA2G4-201ENST00000303305 2577 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
BRCA1P38398 PLPPR5-201ENST00000263177 3288 ntAPPRIS P4 TSL 1 (best) BASIC16.52■□□□□ 0.24
BRCA1P38398 CBS-204ENST00000398165 2605 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
BRCA1P38398 ABCD3-201ENST00000315713 884 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
BRCA1P38398 LINC00544-201ENST00000400540 1031 ntTSL 5 BASIC16.52■□□□□ 0.24
BRCA1P38398 AC005822.1-201ENST00000414124 1034 ntBASIC16.52■□□□□ 0.24
BRCA1P38398 ALMS1P1-201ENST00000428767 921 ntBASIC16.52■□□□□ 0.24
BRCA1P38398 AC092284.1-201ENST00000511386 1289 ntBASIC16.52■□□□□ 0.24
BRCA1P38398 AC246817.2-204ENST00000517984 562 ntTSL 4 BASIC16.52■□□□□ 0.24
BRCA1P38398 WASIR2-201ENST00000527434 1054 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
BRCA1P38398 AC006273.1-201ENST00000606966 861 ntBASIC16.52■□□□□ 0.24
BRCA1P38398 AC211476.2-201ENST00000608799 708 ntBASIC16.52■□□□□ 0.24
BRCA1P38398 BIN3-212ENST00000640731 450 ntTSL 5 BASIC16.52■□□□□ 0.24
BRCA1P38398 GGACT-202ENST00000455100 2678 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
BRCA1P38398 RGS3-201ENST00000317613 2542 ntTSL 2 BASIC16.52■□□□□ 0.24
BRCA1P38398 STAT1-203ENST00000392323 2723 ntAPPRIS ALT1 TSL 2 BASIC16.52■□□□□ 0.24
BRCA1P38398 AL031280.1-201ENST00000436991 2224 ntTSL 2 BASIC16.52■□□□□ 0.24
BRCA1P38398 AC004554.2-201ENST00000634846 1893 ntTSL 5 BASIC16.52■□□□□ 0.24
BRCA1P38398 AC003986.1-201ENST00000452700 1526 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
BRCA1P38398 ELP4-201ENST00000350638 1907 ntAPPRIS ALT1 TSL 5 BASIC16.52■□□□□ 0.24
BRCA1P38398 LDHA-203ENST00000379412 1922 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.24
BRCA1P38398 KIRREL3-202ENST00000525704 2474 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.24
BRCA1P38398 AC138904.3-201ENST00000635780 2681 ntTSL 5 BASIC16.52■□□□□ 0.24
BRCA1P38398 TCP10-202ENST00000397829 2141 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.24
BRCA1P38398 ADAM23-202ENST00000374415 2714 ntAPPRIS ALT1 TSL 5 BASIC16.52■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 38.1 ms