Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 ATF4P4-201ENST00000393544 1930 ntBASIC17.18■□□□□ 0.34
COL5A3P25940 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC17.18■□□□□ 0.34
COL5A3P25940 DRD3-203ENST00000460779 1557 ntAPPRIS P3 TSL 2 BASIC17.18■□□□□ 0.34
COL5A3P25940 PMF1-201ENST00000368273 884 ntTSL 2 BASIC17.18■□□□□ 0.34
COL5A3P25940 FAM126A-201ENST00000409763 616 ntTSL 2 BASIC17.18■□□□□ 0.34
COL5A3P25940 AC096536.3-201ENST00000415336 575 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
COL5A3P25940 CRIP1P2-201ENST00000425396 228 ntBASIC17.18■□□□□ 0.34
COL5A3P25940 RPL18AP15-201ENST00000430258 517 ntBASIC17.18■□□□□ 0.34
COL5A3P25940 AC103724.2-201ENST00000520355 476 ntBASIC17.18■□□□□ 0.34
COL5A3P25940 CDC37P2-201ENST00000562287 1029 ntBASIC17.18■□□□□ 0.34
COL5A3P25940 RBMX-209ENST00000565438 1292 ntTSL 5 BASIC17.18■□□□□ 0.34
COL5A3P25940 MDC1-209ENST00000613547 830 ntTSL 5 BASIC17.18■□□□□ 0.34
COL5A3P25940 DCUN1D4-203ENST00000451288 4269 ntTSL 2 BASIC17.18■□□□□ 0.34
COL5A3P25940 TXNDC2-206ENST00000611534 2066 ntAPPRIS ALT2 TSL 5 BASIC17.18■□□□□ 0.34
COL5A3P25940 FAM156A-208ENST00000615092 2098 ntAPPRIS P2 TSL 5 BASIC17.18■□□□□ 0.34
COL5A3P25940 CPA1-207ENST00000484324 1303 ntTSL 5 BASIC17.18■□□□□ 0.34
COL5A3P25940 ACE-201ENST00000290863 2479 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
COL5A3P25940 PCDHA7-201ENST00000356878 2922 ntAPPRIS ALT2 BASIC17.18■□□□□ 0.34
COL5A3P25940 PRMT6-201ENST00000370078 2616 ntAPPRIS P1 BASIC17.17■□□□□ 0.34
COL5A3P25940 CES1-202ENST00000361503 1835 ntAPPRIS ALT1 TSL 1 (best) BASIC17.17■□□□□ 0.34
COL5A3P25940 SRL-202ENST00000537996 1814 ntTSL 2 BASIC17.17■□□□□ 0.34
COL5A3P25940 AL359878.1-201ENST00000381466 1886 ntTSL 2 BASIC17.17■□□□□ 0.34
COL5A3P25940 FES-202ENST00000394300 2302 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
COL5A3P25940 FAM160A2-202ENST00000449352 3354 ntAPPRIS ALT1 TSL 1 (best) BASIC17.17■□□□□ 0.34
COL5A3P25940 GOLGA8G-203ENST00000525590 2009 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
COL5A3P25940 GOLGA8F-202ENST00000532622 2009 ntAPPRIS P5 TSL 5 BASIC17.17■□□□□ 0.34
COL5A3P25940 GTF2A1L-201ENST00000403751 1639 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
COL5A3P25940 USP10-201ENST00000219473 3009 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
COL5A3P25940 LINC01535-206ENST00000592712 1699 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
COL5A3P25940 CDH16-204ENST00000565796 2694 ntTSL 2 BASIC17.17■□□□□ 0.34
COL5A3P25940 PEX5L-211ENST00000472994 2235 ntAPPRIS ALT2 TSL 2 BASIC17.17■□□□□ 0.34
COL5A3P25940 TGM6-201ENST00000202625 2292 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
COL5A3P25940 MYL3-201ENST00000292327 924 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
COL5A3P25940 OR2V2-201ENST00000328275 948 ntAPPRIS P1 BASIC17.17■□□□□ 0.34
COL5A3P25940 IZUMO1R-201ENST00000328458 798 ntAPPRIS P2 TSL 5 BASIC17.17■□□□□ 0.34
COL5A3P25940 NANOS3-201ENST00000339133 581 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
COL5A3P25940 ASS1P1-201ENST00000402854 1237 ntBASIC17.17■□□□□ 0.34
COL5A3P25940 AP001092.1-201ENST00000433606 469 ntTSL 3 BASIC17.17■□□□□ 0.34
COL5A3P25940 AL161727.1-201ENST00000457409 530 ntBASIC17.17■□□□□ 0.34
COL5A3P25940 BICD1P1-201ENST00000457832 1222 ntBASIC17.17■□□□□ 0.34
COL5A3P25940 RN7SL646P-201ENST00000492969 297 ntBASIC17.17■□□□□ 0.34
COL5A3P25940 IMMP1L-213ENST00000533642 314 ntTSL 2 BASIC17.17■□□□□ 0.34
COL5A3P25940 AC018766.1-201ENST00000601211 484 ntTSL 3 BASIC17.17■□□□□ 0.34
COL5A3P25940 AC092535.4-201ENST00000609548 397 ntBASIC17.17■□□□□ 0.34
COL5A3P25940 Metazoa_SRP.122-201ENST00000610476 285 ntBASIC17.17■□□□□ 0.34
COL5A3P25940 OAZ3-207ENST00000627780 850 ntTSL 5 BASIC17.17■□□□□ 0.34
COL5A3P25940 OAZ3-209ENST00000635322 745 ntTSL 5 BASIC17.17■□□□□ 0.34
COL5A3P25940 GRHL1-202ENST00000405379 1881 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
COL5A3P25940 PVR-202ENST00000344956 3166 ntAPPRIS ALT2 TSL 5 BASIC17.17■□□□□ 0.34
COL5A3P25940 NAA60-202ENST00000407558 2735 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
COL5A3P25940 ABHD15-201ENST00000307201 3592 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
COL5A3P25940 DAP3-201ENST00000343043 1649 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
COL5A3P25940 C17orf113-201ENST00000587304 3746 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
COL5A3P25940 TCF25-202ENST00000263347 2377 ntTSL 5 BASIC17.17■□□□□ 0.34
COL5A3P25940 PARP3-203ENST00000431474 2360 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
COL5A3P25940 AL928654.5-201ENST00000624831 2501 ntBASIC17.16■□□□□ 0.34
COL5A3P25940 ATP6V0A1-206ENST00000585525 2679 ntTSL 2 BASIC17.16■□□□□ 0.34
COL5A3P25940 CCT7-201ENST00000258091 1916 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
COL5A3P25940 E2F6-211ENST00000542100 3450 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
COL5A3P25940 ZFAND5-205ENST00000376962 2785 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
COL5A3P25940 AL589935.1-203ENST00000412751 465 ntTSL 3 BASIC17.16■□□□□ 0.34
COL5A3P25940 AL954722.1-201ENST00000431238 259 ntBASIC17.16■□□□□ 0.34
COL5A3P25940 RPL38-202ENST00000439590 431 ntAPPRIS P2 TSL 2 BASIC17.16■□□□□ 0.34
COL5A3P25940 AC025259.1-201ENST00000550301 647 ntTSL 3 BASIC17.16■□□□□ 0.34
COL5A3P25940 CSRP2-207ENST00000552330 910 ntTSL 3 BASIC17.16■□□□□ 0.34
COL5A3P25940 LIMD2-210ENST00000582055 509 ntTSL 2 BASIC17.16■□□□□ 0.34
COL5A3P25940 TLE2-205ENST00000586422 389 ntTSL 5 BASIC17.16■□□□□ 0.34
COL5A3P25940 TUBB4A-207ENST00000596926 548 ntTSL 4 BASIC17.16■□□□□ 0.34
COL5A3P25940 AC136475.1-203ENST00000602756 1034 ntTSL 3 BASIC17.16■□□□□ 0.34
COL5A3P25940 URGCP-MRPS24-201ENST00000603700 795 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
COL5A3P25940 MAPK7-202ENST00000308406 3149 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
COL5A3P25940 PCNP-201ENST00000265260 2342 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
COL5A3P25940 APOL5-201ENST00000249044 1438 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
COL5A3P25940 PRICKLE1-211ENST00000639566 3341 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
COL5A3P25940 CKMT2-203ENST00000437669 1479 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
COL5A3P25940 AP000787.1-205ENST00000536683 1485 ntTSL 5 BASIC17.16■□□□□ 0.34
COL5A3P25940 MYADML2-201ENST00000409745 2452 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
COL5A3P25940 UBAC2-202ENST00000376440 2525 ntTSL 2 BASIC17.16■□□□□ 0.34
COL5A3P25940 LINC02226-201ENST00000501071 1587 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
COL5A3P25940 TGM1-202ENST00000544573 1581 ntTSL 2 BASIC17.16■□□□□ 0.34
COL5A3P25940 TNRC18P2-201ENST00000417666 2714 ntBASIC17.16■□□□□ 0.34
COL5A3P25940 LMNB1-201ENST00000261366 2878 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
COL5A3P25940 ZSCAN5B-202ENST00000586855 2059 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
COL5A3P25940 NEIL2-201ENST00000284503 2671 ntAPPRIS P1 TSL 2 BASIC17.16■□□□□ 0.34
COL5A3P25940 EIF2S2-201ENST00000374980 2656 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
COL5A3P25940 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
COL5A3P25940 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
COL5A3P25940 CCL17-201ENST00000219244 615 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
COL5A3P25940 IQCF1-201ENST00000310914 695 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
COL5A3P25940 GYG2-201ENST00000353656 1293 ntAPPRIS ALT2 TSL 5 BASIC17.16■□□□□ 0.34
COL5A3P25940 AC004895.1-202ENST00000435547 547 ntTSL 5 BASIC17.16■□□□□ 0.34
COL5A3P25940 AP000959.1-201ENST00000441759 977 ntTSL 3 BASIC17.16■□□□□ 0.34
COL5A3P25940 RN7SL672P-201ENST00000474091 317 ntBASIC17.16■□□□□ 0.34
COL5A3P25940 GYG1-209ENST00000483267 801 ntTSL 2 BASIC17.16■□□□□ 0.34
COL5A3P25940 AP001107.9-202ENST00000531602 613 ntTSL 2 BASIC17.16■□□□□ 0.34
COL5A3P25940 AC007223.1-201ENST00000564076 572 ntTSL 3 BASIC17.16■□□□□ 0.34
COL5A3P25940 MSRB1-205ENST00000564908 550 ntTSL 3 BASIC17.16■□□□□ 0.34
COL5A3P25940 PCTP-206ENST00000573500 919 ntTSL 3 BASIC17.16■□□□□ 0.34
COL5A3P25940 GMFG-206ENST00000597595 758 ntAPPRIS P2 TSL 1 (best) BASIC17.16■□□□□ 0.34
COL5A3P25940 AC092687.3-201ENST00000606907 393 ntTSL 5 BASIC17.16■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 51.8 ms