Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 MTA3-202ENST00000405592 5832 ntTSL 2 BASIC13.92□□□□□ -0.18
CCDC28BQ9BUN5 RAB37-202ENST00000392610 2858 ntTSL 3 BASIC13.92□□□□□ -0.18
CCDC28BQ9BUN5 HSPA6-201ENST00000309758 2371 ntAPPRIS P1 BASIC13.92□□□□□ -0.18
CCDC28BQ9BUN5 AGPAT3-205ENST00000398063 5767 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
CCDC28BQ9BUN5 COX6A1-201ENST00000229379 572 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
CCDC28BQ9BUN5 ANGPTL8-201ENST00000252453 872 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
CCDC28BQ9BUN5 CCL19-201ENST00000311925 687 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
CCDC28BQ9BUN5 TMEM91-202ENST00000356385 944 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
CCDC28BQ9BUN5 SELENOM-201ENST00000400299 694 ntAPPRIS P2 TSL 1 (best) BASIC13.92□□□□□ -0.18
CCDC28BQ9BUN5 AL391361.3-201ENST00000420601 379 ntTSL 2 BASIC13.92□□□□□ -0.18
CCDC28BQ9BUN5 AL354893.2-201ENST00000423075 529 ntTSL 5 BASIC13.92□□□□□ -0.18
CCDC28BQ9BUN5 ARHGAP11B-201ENST00000428041 1017 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
CCDC28BQ9BUN5 RNASE10-202ENST00000430083 1172 ntTSL 2 BASIC13.92□□□□□ -0.18
CCDC28BQ9BUN5 AC003958.1-201ENST00000435883 421 ntBASIC13.92□□□□□ -0.18
CCDC28BQ9BUN5 CLRN2-201ENST00000511148 823 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
CCDC28BQ9BUN5 AC106897.1-201ENST00000512874 394 ntTSL 2 BASIC13.92□□□□□ -0.18
CCDC28BQ9BUN5 CATSPERZ-203ENST00000539943 917 ntAPPRIS ALT2 TSL 2 BASIC13.92□□□□□ -0.18
CCDC28BQ9BUN5 ANGPTL8-203ENST00000591200 504 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
CCDC28BQ9BUN5 UBXN1-218ENST00000616865 1002 ntTSL 5 BASIC13.92□□□□□ -0.18
CCDC28BQ9BUN5 ABBA01031660.1-201ENST00000635219 756 ntBASIC13.92□□□□□ -0.18
CCDC28BQ9BUN5 PAPPA-201ENST00000328252 10959 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
CCDC28BQ9BUN5 LSM14A-203ENST00000544216 3596 ntAPPRIS P3 TSL 1 (best) BASIC13.92□□□□□ -0.18
CCDC28BQ9BUN5 TCP11L1-209ENST00000531632 1898 ntAPPRIS P1 TSL 2 BASIC13.92□□□□□ -0.18
CCDC28BQ9BUN5 BCKDHB-201ENST00000320393 3692 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
CCDC28BQ9BUN5 GPX3-201ENST00000388825 1636 ntAPPRIS P2 TSL 1 (best) BASIC13.92□□□□□ -0.18
CCDC28BQ9BUN5 DEK-202ENST00000397239 3427 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
CCDC28BQ9BUN5 SATB2-211ENST00000614512 4972 ntTSL 5 BASIC13.92□□□□□ -0.18
CCDC28BQ9BUN5 AL031719.1-201ENST00000623365 2587 ntBASIC13.92□□□□□ -0.18
CCDC28BQ9BUN5 B3GAT1-202ENST00000392580 3522 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
CCDC28BQ9BUN5 AC125807.2-201ENST00000513358 3514 ntBASIC13.92□□□□□ -0.18
CCDC28BQ9BUN5 TUBGCP3-201ENST00000261965 3899 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
CCDC28BQ9BUN5 CIART-201ENST00000290363 1746 ntAPPRIS P3 TSL 1 (best) BASIC13.92□□□□□ -0.18
CCDC28BQ9BUN5 OGDH-204ENST00000443864 1744 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
CCDC28BQ9BUN5 GMPPB-203ENST00000480687 6108 ntAPPRIS P1 TSL 2 BASIC13.92□□□□□ -0.18
CCDC28BQ9BUN5 NHEJ1-201ENST00000356853 2094 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
CCDC28BQ9BUN5 ZNF426-204ENST00000593003 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
CCDC28BQ9BUN5 CDCA7-203ENST00000410019 1488 ntTSL 2 BASIC13.92□□□□□ -0.18
CCDC28BQ9BUN5 AC061965.1-201ENST00000560524 1465 ntBASIC13.92□□□□□ -0.18
CCDC28BQ9BUN5 SH2D7-202ENST00000409568 2162 ntTSL 5 BASIC13.92□□□□□ -0.18
CCDC28BQ9BUN5 POU2F2-204ENST00000526816 3218 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
CCDC28BQ9BUN5 SYNGR1-203ENST00000328933 4391 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
CCDC28BQ9BUN5 UBXN11-202ENST00000357089 1555 ntAPPRIS ALT2 TSL 5 BASIC13.92□□□□□ -0.18
CCDC28BQ9BUN5 ACTN4-203ENST00000424234 1566 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
CCDC28BQ9BUN5 TLE3-211ENST00000557997 3683 ntAPPRIS ALT1 TSL 1 (best) BASIC13.92□□□□□ -0.18
CCDC28BQ9BUN5 AC018445.4-201ENST00000624066 2291 ntBASIC13.92□□□□□ -0.18
CCDC28BQ9BUN5 C15orf59-204ENST00000569673 6573 ntAPPRIS P1 TSL 5 BASIC13.92□□□□□ -0.18
CCDC28BQ9BUN5 COL18A1-AS1-201ENST00000397787 3425 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
CCDC28BQ9BUN5 PDPK1-202ENST00000342085 7241 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
CCDC28BQ9BUN5 FES-201ENST00000328850 2829 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
CCDC28BQ9BUN5 CETP-201ENST00000200676 1791 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
CCDC28BQ9BUN5 TMEM40-205ENST00000435575 1785 ntAPPRIS ALT2 TSL 2 BASIC13.91□□□□□ -0.18
CCDC28BQ9BUN5 PHLDB2-204ENST00000431670 6127 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
CCDC28BQ9BUN5 PRR29-202ENST00000412177 3127 ntAPPRIS P3 TSL 2 BASIC13.91□□□□□ -0.18
CCDC28BQ9BUN5 LRRC32-201ENST00000260061 4207 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
CCDC28BQ9BUN5 MYRIP-203ENST00000425621 2981 ntTSL 2 BASIC13.91□□□□□ -0.18
CCDC28BQ9BUN5 FAM156A-208ENST00000615092 2098 ntAPPRIS P2 TSL 5 BASIC13.91□□□□□ -0.18
CCDC28BQ9BUN5 LIMS2-206ENST00000409754 1620 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
CCDC28BQ9BUN5 HLA-DQB1-205ENST00000434651 1642 ntAPPRIS P1 BASIC13.91□□□□□ -0.18
CCDC28BQ9BUN5 NUB1-201ENST00000413040 3180 ntAPPRIS P3 TSL 1 (best) BASIC13.91□□□□□ -0.18
CCDC28BQ9BUN5 NACC2-202ENST00000371753 6802 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
CCDC28BQ9BUN5 MYO1C-218ENST00000575158 4804 ntAPPRIS P3 TSL 5 BASIC13.91□□□□□ -0.18
CCDC28BQ9BUN5 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC13.91□□□□□ -0.18
CCDC28BQ9BUN5 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
CCDC28BQ9BUN5 AC087499.6-201ENST00000411576 835 ntBASIC13.91□□□□□ -0.18
CCDC28BQ9BUN5 SHANK2-210ENST00000449116 939 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
CCDC28BQ9BUN5 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC13.91□□□□□ -0.18
CCDC28BQ9BUN5 AC104596.1-201ENST00000507826 579 ntTSL 4 BASIC13.91□□□□□ -0.18
CCDC28BQ9BUN5 AC025442.1-201ENST00000521596 481 ntTSL 2 BASIC13.91□□□□□ -0.18
CCDC28BQ9BUN5 LINC00824-206ENST00000523173 920 ntTSL 2 BASIC13.91□□□□□ -0.18
CCDC28BQ9BUN5 WDR25-203ENST00000542471 1214 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
CCDC28BQ9BUN5 NR2C2AP-207ENST00000544883 899 ntTSL 2 BASIC13.91□□□□□ -0.18
CCDC28BQ9BUN5 LINC02285-201ENST00000557121 943 ntTSL 2 BASIC13.91□□□□□ -0.18
CCDC28BQ9BUN5 AC129507.3-201ENST00000571512 913 ntTSL 2 BASIC13.91□□□□□ -0.18
CCDC28BQ9BUN5 MYMX-202ENST00000576476 682 ntAPPRIS P1 TSL 3 BASIC13.91□□□□□ -0.18
CCDC28BQ9BUN5 ANAPC11-215ENST00000578550 599 ntAPPRIS P1 TSL 2 BASIC13.91□□□□□ -0.18
CCDC28BQ9BUN5 SPECC1-223ENST00000584527 940 ntTSL 3 BASIC13.91□□□□□ -0.18
CCDC28BQ9BUN5 SLC25A39-207ENST00000586016 1156 ntTSL 5 BASIC13.91□□□□□ -0.18
CCDC28BQ9BUN5 AP001160.2-201ENST00000596071 487 ntBASIC13.91□□□□□ -0.18
CCDC28BQ9BUN5 AC141424.1-203ENST00000599026 887 ntTSL 5 BASIC13.91□□□□□ -0.18
CCDC28BQ9BUN5 AC092070.4-201ENST00000599803 507 ntTSL 5 BASIC13.91□□□□□ -0.18
CCDC28BQ9BUN5 NPIPB11-202ENST00000614927 1216 ntTSL 5 BASIC13.91□□□□□ -0.18
CCDC28BQ9BUN5 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC13.91□□□□□ -0.18
CCDC28BQ9BUN5 AL691403.2-201ENST00000618460 490 ntBASIC13.91□□□□□ -0.18
CCDC28BQ9BUN5 CYP4B1-215ENST00000640628 969 ntTSL 5 BASIC13.91□□□□□ -0.18
CCDC28BQ9BUN5 AP000552.1-203ENST00000416615 1930 ntTSL 5 BASIC13.91□□□□□ -0.18
CCDC28BQ9BUN5 GMPR2-206ENST00000557854 2025 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
CCDC28BQ9BUN5 TRIM50-202ENST00000453152 1599 ntAPPRIS P1 TSL 2 BASIC13.91□□□□□ -0.18
CCDC28BQ9BUN5 STRIP2-202ENST00000435494 2866 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
CCDC28BQ9BUN5 SALL4P6-201ENST00000429385 1691 ntBASIC13.91□□□□□ -0.18
CCDC28BQ9BUN5 USP19-202ENST00000398888 4559 ntAPPRIS P3 TSL 1 (best) BASIC13.91□□□□□ -0.18
CCDC28BQ9BUN5 SLC7A8-205ENST00000453702 1752 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
CCDC28BQ9BUN5 TRPV1-209ENST00000576351 2525 ntTSL 5 BASIC13.91□□□□□ -0.18
CCDC28BQ9BUN5 FAM187A-201ENST00000331733 3397 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
CCDC28BQ9BUN5 CCDC103-204ENST00000417826 3397 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
CCDC28BQ9BUN5 C12orf76-201ENST00000309050 1964 ntTSL 2 BASIC13.91□□□□□ -0.18
CCDC28BQ9BUN5 DYNC1I1-202ENST00000359388 2843 ntAPPRIS ALT1 TSL 1 (best) BASIC13.91□□□□□ -0.18
CCDC28BQ9BUN5 CACNA1C-231ENST00000616390 2833 ntTSL 2 BASIC13.91□□□□□ -0.18
CCDC28BQ9BUN5 ECSIT-209ENST00000591104 1319 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
CCDC28BQ9BUN5 FASN-206ENST00000634990 8407 ntAPPRIS ALT1 TSL 5 BASIC13.9□□□□□ -0.18
CCDC28BQ9BUN5 SLC22A5-201ENST00000245407 3237 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 51.2 ms