Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 HORMAD1-201ENST00000322343 1771 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
PDLIM3Q53GG5 RBBP4-204ENST00000414241 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC11.99□□□□□ -0.49
PDLIM3Q53GG5 SP140L-204ENST00000444636 1781 ntTSL 5 BASIC11.99□□□□□ -0.49
PDLIM3Q53GG5 FXYD6-207ENST00000527717 1799 ntAPPRIS P2 TSL 2 BASIC11.99□□□□□ -0.49
PDLIM3Q53GG5 BPI-201ENST00000262865 1874 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
PDLIM3Q53GG5 ENTPD4-202ENST00000358689 5861 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
PDLIM3Q53GG5 NCAPH2-201ENST00000299821 1996 ntAPPRIS ALT2 TSL 1 (best) BASIC11.99□□□□□ -0.49
PDLIM3Q53GG5 AC007240.1-201ENST00000641498 1996 ntAPPRIS P1 BASIC11.99□□□□□ -0.49
PDLIM3Q53GG5 NR4A1-213ENST00000550082 2029 ntTSL 5 BASIC11.99□□□□□ -0.49
PDLIM3Q53GG5 TMEM170A-207ENST00000569540 2331 ntTSL 2 BASIC11.99□□□□□ -0.49
PDLIM3Q53GG5 CICP17-201ENST00000418553 2377 ntBASIC11.99□□□□□ -0.49
PDLIM3Q53GG5 NAA60-202ENST00000407558 2735 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
PDLIM3Q53GG5 DDR1-271ENST00000513240 2882 ntAPPRIS ALT2 TSL 5 BASIC11.99□□□□□ -0.49
PDLIM3Q53GG5 ASPH-214ENST00000519234 2874 ntTSL 5 BASIC11.99□□□□□ -0.49
PDLIM3Q53GG5 SEPT9-220ENST00000588690 2919 ntTSL 5 BASIC11.99□□□□□ -0.49
PDLIM3Q53GG5 PLK2-201ENST00000274289 2960 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
PDLIM3Q53GG5 FKBP9-214ENST00000538336 3621 ntTSL 2 BASIC11.99□□□□□ -0.49
PDLIM3Q53GG5 ISY1-203ENST00000393295 3842 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
PDLIM3Q53GG5 GMEB2-203ENST00000370077 4223 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
PDLIM3Q53GG5 MKL1-201ENST00000355630 4496 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
PDLIM3Q53GG5 CCDC18-203ENST00000401026 4552 ntAPPRIS ALT2 TSL 1 (best) BASIC11.99□□□□□ -0.49
PDLIM3Q53GG5 NHSL1-204ENST00000427025 7500 ntAPPRIS ALT2 TSL 5 BASIC11.98□□□□□ -0.49
PDLIM3Q53GG5 YLPM1-207ENST00000552421 4899 ntAPPRIS ALT2 TSL 5 BASIC11.98□□□□□ -0.49
PDLIM3Q53GG5 COL1A2-213ENST00000620463 4523 ntTSL 5 BASIC11.98□□□□□ -0.49
PDLIM3Q53GG5 MAMDC4-202ENST00000445819 3895 ntAPPRIS ALT2 TSL 5 BASIC11.98□□□□□ -0.49
PDLIM3Q53GG5 CES3-202ENST00000394037 3817 ntAPPRIS ALT1 TSL 1 (best) BASIC11.98□□□□□ -0.49
PDLIM3Q53GG5 FRMD8-201ENST00000317568 3723 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
PDLIM3Q53GG5 NOP14-203ENST00000416614 3538 ntAPPRIS P3 TSL 1 (best) BASIC11.98□□□□□ -0.49
PDLIM3Q53GG5 EPHX2-207ENST00000521400 3140 ntAPPRIS P2 TSL 1 (best) BASIC11.98□□□□□ -0.49
PDLIM3Q53GG5 BCAR1-205ENST00000420641 2725 ntAPPRIS ALT2 TSL 2 BASIC11.98□□□□□ -0.49
PDLIM3Q53GG5 DNASE1L1-206ENST00000393638 2665 ntAPPRIS P1 TSL 5 BASIC11.98□□□□□ -0.49
PDLIM3Q53GG5 RFX2-222ENST00000592546 2578 ntAPPRIS ALT1 TSL 2 BASIC11.98□□□□□ -0.49
PDLIM3Q53GG5 HARS2-201ENST00000230771 2483 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
PDLIM3Q53GG5 AC013460.1-202ENST00000435062 2253 ntTSL 2 BASIC11.98□□□□□ -0.49
PDLIM3Q53GG5 CAMLG-201ENST00000297156 2221 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
PDLIM3Q53GG5 TGM6-202ENST00000381423 2158 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
PDLIM3Q53GG5 PGLYRP4-202ENST00000368739 2116 ntAPPRIS ALT1 TSL 5 BASIC11.98□□□□□ -0.49
PDLIM3Q53GG5 C4B-AS1-205ENST00000415626 2095 ntTSL 2 BASIC11.98□□□□□ -0.49
PDLIM3Q53GG5 C4A-AS1-204ENST00000458633 2095 ntTSL 2 BASIC11.98□□□□□ -0.49
PDLIM3Q53GG5 CDYL2-203ENST00000562812 2086 ntAPPRIS ALT2 TSL 5 BASIC11.98□□□□□ -0.49
PDLIM3Q53GG5 CDYL2-204ENST00000563890 2086 ntAPPRIS ALT2 TSL 5 BASIC11.98□□□□□ -0.49
PDLIM3Q53GG5 CDYL2-205ENST00000566173 2086 ntAPPRIS ALT2 TSL 5 BASIC11.98□□□□□ -0.49
PDLIM3Q53GG5 AC010247.2-201ENST00000559786 1955 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
PDLIM3Q53GG5 ABAT-203ENST00000425191 1923 ntAPPRIS P1 TSL 2 BASIC11.98□□□□□ -0.49
PDLIM3Q53GG5 RNASEH1-201ENST00000315212 1887 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
PDLIM3Q53GG5 NEAT1-201ENST00000499732 1811 ntTSL 2 BASIC11.98□□□□□ -0.49
PDLIM3Q53GG5 ALDH3A1-201ENST00000225740 1779 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
PDLIM3Q53GG5 KRT32-201ENST00000225899 1750 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
PDLIM3Q53GG5 ZNF772-202ENST00000356584 1799 ntAPPRIS ALT2 TSL 2 BASIC11.98□□□□□ -0.49
PDLIM3Q53GG5 AC093520.1-201ENST00000567545 1767 ntTSL 5 BASIC11.98□□□□□ -0.49
PDLIM3Q53GG5 LINC01873-201ENST00000428647 1679 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
PDLIM3Q53GG5 NT5C3A-213ENST00000610140 1670 ntAPPRIS ALT1 TSL 1 (best) BASIC11.98□□□□□ -0.49
PDLIM3Q53GG5 NMNAT3-201ENST00000296202 1569 ntAPPRIS P1 TSL 5 BASIC11.98□□□□□ -0.49
PDLIM3Q53GG5 CDH11-201ENST00000268603 6857 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
PDLIM3Q53GG5 EIF3A-201ENST00000369144 6646 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
PDLIM3Q53GG5 CASKIN2-202ENST00000433559 3950 ntTSL 2 BASIC11.98□□□□□ -0.49
PDLIM3Q53GG5 AC016582.3-202ENST00000443870 6580 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
PDLIM3Q53GG5 HS3ST5-201ENST00000312719 3901 ntAPPRIS P1 TSL 2 BASIC11.98□□□□□ -0.49
PDLIM3Q53GG5 TEX29-201ENST00000283547 709 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
PDLIM3Q53GG5 POLR2L-201ENST00000322028 892 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
PDLIM3Q53GG5 C1orf43-205ENST00000368519 1163 ntTSL 2 BASIC11.98□□□□□ -0.49
PDLIM3Q53GG5 ADAMTSL1-208ENST00000380570 931 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
PDLIM3Q53GG5 IGLC7-201ENST00000390331 441 ntAPPRIS P1 BASIC11.98□□□□□ -0.49
PDLIM3Q53GG5 RABL2A-203ENST00000393166 1052 ntAPPRIS P3 TSL 1 (best) BASIC11.98□□□□□ -0.49
PDLIM3Q53GG5 AL845321.1-202ENST00000432011 786 ntTSL 5 BASIC11.98□□□□□ -0.49
PDLIM3Q53GG5 AC243961.1-201ENST00000432559 384 ntTSL 5 BASIC11.98□□□□□ -0.49
PDLIM3Q53GG5 AC245056.1-201ENST00000437631 384 ntTSL 5 BASIC11.98□□□□□ -0.49
PDLIM3Q53GG5 AL133466.1-201ENST00000447582 150 ntBASIC11.98□□□□□ -0.49
PDLIM3Q53GG5 SNHG11-212ENST00000449351 954 ntTSL 5 BASIC11.98□□□□□ -0.49
PDLIM3Q53GG5 SEPT7P2-209ENST00000450436 601 ntTSL 4 BASIC11.98□□□□□ -0.49
PDLIM3Q53GG5 AL591846.1-201ENST00000451736 433 ntBASIC11.98□□□□□ -0.49
PDLIM3Q53GG5 RN7SL399P-201ENST00000471648 279 ntBASIC11.98□□□□□ -0.49
PDLIM3Q53GG5 AC104784.1-201ENST00000473096 294 ntBASIC11.98□□□□□ -0.49
PDLIM3Q53GG5 FAM86LP-201ENST00000478302 853 ntBASIC11.98□□□□□ -0.49
PDLIM3Q53GG5 FTLP10-202ENST00000505798 471 ntBASIC11.98□□□□□ -0.49
PDLIM3Q53GG5 EVX1-AS-202ENST00000519050 576 ntTSL 4 BASIC11.98□□□□□ -0.49
PDLIM3Q53GG5 BCAT2-203ENST00000545387 1272 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
PDLIM3Q53GG5 C12orf73-211ENST00000553183 660 ntAPPRIS P1 TSL 3 BASIC11.98□□□□□ -0.49
PDLIM3Q53GG5 AP006547.1-201ENST00000563435 692 ntBASIC11.98□□□□□ -0.49
PDLIM3Q53GG5 HAUS2-207ENST00000568846 709 ntTSL 3 BASIC11.98□□□□□ -0.49
PDLIM3Q53GG5 MIF4GD-206ENST00000579119 856 ntTSL 3 BASIC11.98□□□□□ -0.49
PDLIM3Q53GG5 EEF1DP1-201ENST00000585891 896 ntBASIC11.98□□□□□ -0.49
PDLIM3Q53GG5 ZNF180-204ENST00000586637 1023 ntTSL 5 BASIC11.98□□□□□ -0.49
PDLIM3Q53GG5 KLK3-211ENST00000597483 810 ntTSL 2 BASIC11.98□□□□□ -0.49
PDLIM3Q53GG5 SRD5A3-AS1-211ENST00000599135 737 ntTSL 5 BASIC11.98□□□□□ -0.49
PDLIM3Q53GG5 COPS9-205ENST00000607357 418 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
PDLIM3Q53GG5 LINC01515-215ENST00000608678 854 ntTSL 5 BASIC11.98□□□□□ -0.49
PDLIM3Q53GG5 CR589904.1-202ENST00000611154 660 ntTSL 5 BASIC11.98□□□□□ -0.49
PDLIM3Q53GG5 MAGI1-217ENST00000611645 6398 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
PDLIM3Q53GG5 PITRM1-206ENST00000451104 3183 ntTSL 2 BASIC11.98□□□□□ -0.49
PDLIM3Q53GG5 ZBTB2-201ENST00000325144 3090 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
PDLIM3Q53GG5 INF2-209ENST00000617571 2956 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
PDLIM3Q53GG5 MAP3K12-205ENST00000547488 2807 ntAPPRIS ALT2 TSL 2 BASIC11.98□□□□□ -0.49
PDLIM3Q53GG5 WBP4-201ENST00000379487 2623 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
PDLIM3Q53GG5 TIGD1-201ENST00000408957 2625 ntAPPRIS P1 BASIC11.98□□□□□ -0.49
PDLIM3Q53GG5 NFATC4-207ENST00000553469 2566 ntAPPRIS ALT2 TSL 1 (best) BASIC11.98□□□□□ -0.49
PDLIM3Q53GG5 UBTF-205ENST00000526094 2459 ntTSL 5 BASIC11.98□□□□□ -0.49
PDLIM3Q53GG5 MLF1-201ENST00000355893 2203 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
PDLIM3Q53GG5 AC089987.1-201ENST00000551654 2209 ntBASIC11.98□□□□□ -0.49
PDLIM3Q53GG5 APBB1-219ENST00000608704 2095 ntTSL 5 BASIC11.98□□□□□ -0.49
Retrieved 100 of 98,524 protein–RNA pairs in 35.4 ms