Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 SIRT5-203ENST00000379262 2339 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
CIITAP33076 EXT1-201ENST00000378204 8270 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
CIITAP33076 BCAR1-202ENST00000393420 2667 ntTSL 5 BASIC15.96■□□□□ 0.15
CIITAP33076 AC004554.1-201ENST00000422830 1468 ntBASIC15.96■□□□□ 0.14
CIITAP33076 AC021683.3-202ENST00000592572 4440 ntTSL 5 BASIC15.96■□□□□ 0.14
CIITAP33076 AC239800.3-201ENST00000424684 5243 ntTSL 5 BASIC15.96■□□□□ 0.14
CIITAP33076 CNOT3-201ENST00000221232 2852 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.14
CIITAP33076 PCDHA9-202ENST00000532602 6293 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.14
CIITAP33076 ATP2B3-202ENST00000349466 4280 ntAPPRIS P1 TSL 5 BASIC15.96■□□□□ 0.14
CIITAP33076 PDE7A-203ENST00000401827 3673 ntAPPRIS ALT1 TSL 1 (best) BASIC15.96■□□□□ 0.14
CIITAP33076 SVIL-AS1-204ENST00000427063 2025 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
CIITAP33076 ARHGEF1-201ENST00000337665 3171 ntAPPRIS P4 TSL 1 (best) BASIC15.95■□□□□ 0.14
CIITAP33076 RALGPS2-204ENST00000367635 5834 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
CIITAP33076 USP25-201ENST00000285679 3973 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
CIITAP33076 TEKT4P2-202ENST00000559466 1312 ntBASIC15.95■□□□□ 0.14
CIITAP33076 OSBPL5-203ENST00000389989 3619 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
CIITAP33076 AC020659.1-201ENST00000309874 2900 ntTSL 2 BASIC15.95■□□□□ 0.14
CIITAP33076 AGFG1-204ENST00000409315 2912 ntTSL 5 BASIC15.95■□□□□ 0.14
CIITAP33076 RSPH6A-203ENST00000600188 1751 ntAPPRIS ALT2 TSL 2 BASIC15.95■□□□□ 0.14
CIITAP33076 FGD5-206ENST00000543601 5768 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
CIITAP33076 ATF4-202ENST00000396680 1419 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
CIITAP33076 SLC47A1-206ENST00000571335 1415 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
CIITAP33076 BCL2L12-211ENST00000614495 1402 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
CIITAP33076 CDS2-203ENST00000460006 9298 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
CIITAP33076 LMNA-201ENST00000347559 3137 ntTSL 5 BASIC15.95■□□□□ 0.14
CIITAP33076 GFI1B-207ENST00000636137 1870 ntTSL 5 BASIC15.95■□□□□ 0.14
CIITAP33076 NOC2L-201ENST00000327044 2790 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
CIITAP33076 ZBTB7C-213ENST00000588982 4949 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
CIITAP33076 LMX1B-201ENST00000355497 5809 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
CIITAP33076 AC006372.4-201ENST00000624122 1543 ntBASIC15.95■□□□□ 0.14
CIITAP33076 HIST2H2BF-201ENST00000369167 1954 ntAPPRIS P1 BASIC15.95■□□□□ 0.14
CIITAP33076 FAF1-202ENST00000396153 6817 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
CIITAP33076 PRKN-204ENST00000366896 2514 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
CIITAP33076 KCNIP1-210ENST00000636734 1613 ntTSL 5 BASIC15.95■□□□□ 0.14
CIITAP33076 SLC30A5-209ENST00000621204 3999 ntTSL 5 BASIC15.95■□□□□ 0.14
CIITAP33076 ADD3-202ENST00000356080 3081 ntAPPRIS P4 TSL 1 (best) BASIC15.95■□□□□ 0.14
CIITAP33076 UCKL1-AS1-201ENST00000623569 3602 ntBASIC15.95■□□□□ 0.14
CIITAP33076 OPA1-204ENST00000361828 6381 ntAPPRIS ALT1 TSL 5 BASIC15.95■□□□□ 0.14
CIITAP33076 FLJ37035-201ENST00000419400 446 ntTSL 3 BASIC15.95■□□□□ 0.14
CIITAP33076 AL627422.1-201ENST00000434104 580 ntBASIC15.95■□□□□ 0.14
CIITAP33076 DGUOK-AS1-202ENST00000439192 563 ntTSL 2 BASIC15.95■□□□□ 0.14
CIITAP33076 IL1R2-203ENST00000441002 1106 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
CIITAP33076 BX324167.1-201ENST00000451118 805 ntTSL 5 BASIC15.95■□□□□ 0.14
CIITAP33076 LINC01563-201ENST00000456235 750 ntTSL 2 BASIC15.95■□□□□ 0.14
CIITAP33076 CHCHD2P9-201ENST00000461726 456 ntBASIC15.95■□□□□ 0.14
CIITAP33076 SZRD1-203ENST00000471507 892 ntAPPRIS ALT1 TSL 2 BASIC15.95■□□□□ 0.14
CIITAP33076 ANXA5-210ENST00000515017 1190 ntTSL 5 BASIC15.95■□□□□ 0.14
CIITAP33076 C12orf73-211ENST00000553183 660 ntAPPRIS P1 TSL 3 BASIC15.95■□□□□ 0.14
CIITAP33076 FOS-204ENST00000554617 796 ntTSL 2 BASIC15.95■□□□□ 0.14
CIITAP33076 AC093330.1-206ENST00000582546 812 ntTSL 3 BASIC15.95■□□□□ 0.14
CIITAP33076 GHRHR-212ENST00000611037 923 ntTSL 5 BASIC15.95■□□□□ 0.14
CIITAP33076 DCTN1-203ENST00000409240 4365 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
CIITAP33076 AAMP-204ENST00000444053 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC15.95■□□□□ 0.14
CIITAP33076 HAP1-204ENST00000393939 5683 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
CIITAP33076 BCL2L13-206ENST00000399782 1381 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
CIITAP33076 TBC1D16-209ENST00000576768 6342 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
CIITAP33076 CSF1-201ENST00000329608 4210 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
CIITAP33076 AP3M2-201ENST00000174653 3661 ntAPPRIS P1 TSL 5 BASIC15.95■□□□□ 0.14
CIITAP33076 HTR7-202ENST00000336152 3126 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
CIITAP33076 KCTD18-202ENST00000409157 2556 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
CIITAP33076 PATZ1-202ENST00000266269 3781 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
CIITAP33076 SOX7-201ENST00000304501 3216 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
CIITAP33076 DNASE1L1-206ENST00000393638 2665 ntAPPRIS P1 TSL 5 BASIC15.95■□□□□ 0.14
CIITAP33076 SEZ6L-209ENST00000529632 6534 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
CIITAP33076 AL928654.5-201ENST00000624831 2501 ntBASIC15.95■□□□□ 0.14
CIITAP33076 DNAJC21-202ENST00000382021 6208 ntTSL 2 BASIC15.95■□□□□ 0.14
CIITAP33076 AC011474.4-201ENST00000623523 2076 ntBASIC15.95■□□□□ 0.14
CIITAP33076 HTR7-203ENST00000371719 3033 ntAPPRIS ALT1 TSL 1 (best) BASIC15.94■□□□□ 0.14
CIITAP33076 ZBP1-201ENST00000371173 2195 ntAPPRIS P3 TSL 1 (best) BASIC15.94■□□□□ 0.14
CIITAP33076 SLC34A2-203ENST00000504570 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC15.94■□□□□ 0.14
CIITAP33076 DACT3-AS1-201ENST00000500689 1304 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
CIITAP33076 APAF1-203ENST00000359972 7029 ntAPPRIS ALT1 TSL 1 (best) BASIC15.94■□□□□ 0.14
CIITAP33076 CALN1-201ENST00000329008 9243 ntAPPRIS P3 TSL 1 (best) BASIC15.94■□□□□ 0.14
CIITAP33076 COG3-201ENST00000349995 4498 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
CIITAP33076 RAB37-206ENST00000392615 2655 ntTSL 3 BASIC15.94■□□□□ 0.14
CIITAP33076 FAM213A-203ENST00000372187 1647 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
CIITAP33076 ARFIP1-203ENST00000405727 1601 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
CIITAP33076 GOT2-202ENST00000434819 1615 ntTSL 2 BASIC15.94■□□□□ 0.14
CIITAP33076 FBXO41-201ENST00000295133 6928 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
CIITAP33076 ZNF75A-205ENST00000574298 2347 ntAPPRIS P1 TSL 2 BASIC15.94■□□□□ 0.14
CIITAP33076 AOC1-201ENST00000360937 2649 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
CIITAP33076 TMEM117-207ENST00000551577 2643 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
CIITAP33076 SLC35A2-204ENST00000376521 3047 ntAPPRIS ALT1 TSL 1 (best) BASIC15.94■□□□□ 0.14
CIITAP33076 TFE3-201ENST00000315869 3415 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
CIITAP33076 MPZL1-203ENST00000392121 3421 ntTSL 2 BASIC15.94■□□□□ 0.14
CIITAP33076 PDE6G-201ENST00000331056 1029 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
CIITAP33076 BCL2L11-202ENST00000337565 720 ntTSL 5 BASIC15.94■□□□□ 0.14
CIITAP33076 TSPO2-201ENST00000373158 718 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
CIITAP33076 SAT1-201ENST00000379251 801 ntTSL 2 BASIC15.94■□□□□ 0.14
CIITAP33076 SAT1-202ENST00000379253 909 ntTSL 2 BASIC15.94■□□□□ 0.14
CIITAP33076 SAT1-203ENST00000379254 868 ntTSL 3 BASIC15.94■□□□□ 0.14
CIITAP33076 SAT1-204ENST00000379270 1065 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
CIITAP33076 AL513211.1-201ENST00000429053 483 ntTSL 3 BASIC15.94■□□□□ 0.14
CIITAP33076 LINC00466-203ENST00000436475 1059 ntTSL 5 BASIC15.94■□□□□ 0.14
CIITAP33076 LINC02028-203ENST00000443776 453 ntTSL 3 BASIC15.94■□□□□ 0.14
CIITAP33076 SOX9-AS1-207ENST00000446332 443 ntTSL 2 BASIC15.94■□□□□ 0.14
CIITAP33076 AC105254.1-201ENST00000507782 621 ntTSL 4 BASIC15.94■□□□□ 0.14
CIITAP33076 ENDOV-229ENST00000523999 864 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
CIITAP33076 AC129102.1-201ENST00000535755 525 ntTSL 4 BASIC15.94■□□□□ 0.14
CIITAP33076 FAM60A-207ENST00000542983 738 ntTSL 4 BASIC15.94■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 37 ms