Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 NCLP1-201ENST00000445357 1963 ntBASIC16.8■□□□□ 0.28
HMGB1P09429 KRT8P21-201ENST00000430398 1491 ntBASIC16.8■□□□□ 0.28
HMGB1P09429 ZNRD1ASP-217ENST00000437417 1497 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
HMGB1P09429 LRRC20-201ENST00000355790 3414 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
HMGB1P09429 SLC38A9-202ENST00000396865 2927 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
HMGB1P09429 BTBD8-201ENST00000342818 1412 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
HMGB1P09429 EGR2-202ENST00000411732 2824 ntTSL 2 BASIC16.8■□□□□ 0.28
HMGB1P09429 TBX6-202ENST00000395224 1803 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
HMGB1P09429 CETP-201ENST00000200676 1791 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
HMGB1P09429 FYTTD1-201ENST00000241502 6866 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
HMGB1P09429 AGER-203ENST00000375065 665 ntTSL 2 BASIC16.8■□□□□ 0.28
HMGB1P09429 CLIC1-206ENST00000375779 1127 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
HMGB1P09429 NRM-202ENST00000376420 1228 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
HMGB1P09429 ADARB2-AS1-201ENST00000381301 625 ntTSL 2 BASIC16.8■□□□□ 0.28
HMGB1P09429 C19orf66-202ENST00000397881 2140 ntAPPRIS ALT2 TSL 2 BASIC16.8■□□□□ 0.28
HMGB1P09429 DICER1-AS1-202ENST00000439819 810 ntTSL 3 BASIC16.8■□□□□ 0.28
HMGB1P09429 SNHG12-210ENST00000483436 682 ntTSL 3 BASIC16.8■□□□□ 0.28
HMGB1P09429 RN7SL530P-201ENST00000485097 298 ntBASIC16.8■□□□□ 0.28
HMGB1P09429 TSPO-206ENST00000583777 636 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
HMGB1P09429 AL022334.2-201ENST00000610000 484 ntBASIC16.8■□□□□ 0.28
HMGB1P09429 FOXM1-203ENST00000361953 3370 ntAPPRIS ALT1 TSL 1 (best) BASIC16.8■□□□□ 0.28
HMGB1P09429 POPDC2-201ENST00000264231 1679 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
HMGB1P09429 SNX20-202ENST00000330943 2904 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
HMGB1P09429 ROPN1B-202ENST00000504401 2050 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
HMGB1P09429 PML-201ENST00000268058 4508 ntAPPRIS P4 TSL 1 (best) BASIC16.8■□□□□ 0.28
HMGB1P09429 ZCCHC7-209ENST00000534928 2828 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
HMGB1P09429 SHROOM1-208ENST00000617339 3638 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
HMGB1P09429 AC104836.1-202ENST00000636805 6041 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
HMGB1P09429 TMBIM1-201ENST00000258412 2371 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
HMGB1P09429 AL139158.3-201ENST00000641212 1562 ntBASIC16.8■□□□□ 0.28
HMGB1P09429 PLXNB1-204ENST00000456774 5859 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
HMGB1P09429 IL20RA-201ENST00000316649 3485 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
HMGB1P09429 ZBTB7B-207ENST00000535420 3777 ntAPPRIS P3 TSL 5 BASIC16.8■□□□□ 0.28
HMGB1P09429 CYP4B1-202ENST00000371919 1494 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
HMGB1P09429 ERLIN1-202ENST00000407654 1453 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
HMGB1P09429 BRD7P5-201ENST00000299197 1822 ntBASIC16.8■□□□□ 0.28
HMGB1P09429 NYNRIN-201ENST00000382554 7857 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
HMGB1P09429 PAX2-202ENST00000361791 3193 ntAPPRIS ALT1 TSL 2 BASIC16.79■□□□□ 0.28
HMGB1P09429 APC2-201ENST00000233607 10151 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
HMGB1P09429 ERICH6-201ENST00000295910 2052 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
HMGB1P09429 CRACR2A-203ENST00000440314 2697 ntAPPRIS P1 TSL 2 BASIC16.79■□□□□ 0.28
HMGB1P09429 DUSP13-208ENST00000478873 1335 ntTSL 5 BASIC16.79■□□□□ 0.28
HMGB1P09429 FGF13-204ENST00000436198 1165 ntTSL 2 BASIC16.79■□□□□ 0.28
HMGB1P09429 AC135178.1-201ENST00000458568 537 ntTSL 3 BASIC16.79■□□□□ 0.28
HMGB1P09429 RN7SL277P-201ENST00000481521 288 ntBASIC16.79■□□□□ 0.28
HMGB1P09429 SELENOW-201ENST00000509570 881 ntTSL 5 BASIC16.79■□□□□ 0.28
HMGB1P09429 AC117500.3-201ENST00000537032 666 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
HMGB1P09429 CDIP1-202ENST00000562334 1205 ntTSL 2 BASIC16.79■□□□□ 0.28
HMGB1P09429 FXYD6-217ENST00000584394 669 ntTSL 3 BASIC16.79■□□□□ 0.28
HMGB1P09429 AC005498.2-204ENST00000590613 413 ntTSL 3 BASIC16.79■□□□□ 0.28
HMGB1P09429 SELENOW-204ENST00000595615 535 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
HMGB1P09429 SELENOW-216ENST00000612212 875 ntTSL 5 BASIC16.79■□□□□ 0.28
HMGB1P09429 LINC01305-201ENST00000420866 3123 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
HMGB1P09429 GPN1-201ENST00000264718 2496 ntAPPRIS P2 TSL 1 (best) BASIC16.79■□□□□ 0.28
HMGB1P09429 METTL7B-201ENST00000394252 1506 ntAPPRIS P1 TSL 2 BASIC16.79■□□□□ 0.28
HMGB1P09429 SS18-201ENST00000269137 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC16.79■□□□□ 0.28
HMGB1P09429 CDH16-201ENST00000299752 2954 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
HMGB1P09429 LINC02135-201ENST00000599486 2065 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
HMGB1P09429 E2F7-202ENST00000416496 5297 ntTSL 5 BASIC16.79■□□□□ 0.28
HMGB1P09429 KCNIP3-201ENST00000295225 2940 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
HMGB1P09429 FMO5-201ENST00000254090 2632 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
HMGB1P09429 AFAP1-204ENST00000420658 7768 ntAPPRIS ALT1 TSL 2 BASIC16.79■□□□□ 0.28
HMGB1P09429 LINC00665-206ENST00000590622 1749 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
HMGB1P09429 B3GAT2-201ENST00000230053 6565 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
HMGB1P09429 POLG-201ENST00000268124 4500 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
HMGB1P09429 GJB4-201ENST00000339480 2840 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
HMGB1P09429 LSS-211ENST00000522411 2523 ntTSL 2 BASIC16.78■□□□□ 0.28
HMGB1P09429 RAB6C-201ENST00000410061 3075 ntAPPRIS P1 BASIC16.78■□□□□ 0.28
HMGB1P09429 PDE4C-204ENST00000539010 1699 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
HMGB1P09429 KCNC2-202ENST00000350228 3344 ntAPPRIS ALT2 TSL 2 BASIC16.78■□□□□ 0.28
HMGB1P09429 NIT1-203ENST00000368009 1362 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
HMGB1P09429 ABCA7-201ENST00000263094 6816 ntAPPRIS P2 TSL 5 BASIC16.78■□□□□ 0.28
HMGB1P09429 FAM129B-202ENST00000373314 3760 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
HMGB1P09429 PHYHIP-202ENST00000454243 3200 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
HMGB1P09429 PIP5K1B-208ENST00000541509 2664 ntTSL 2 BASIC16.78■□□□□ 0.28
HMGB1P09429 FAM120C-201ENST00000328235 3716 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
HMGB1P09429 USP33-202ENST00000370792 2917 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
HMGB1P09429 ABCC6P1-201ENST00000546162 2943 ntTSL 2 BASIC16.78■□□□□ 0.28
HMGB1P09429 CDK5RAP1-202ENST00000346416 2122 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
HMGB1P09429 EIF4G1-218ENST00000434061 5026 ntTSL 2 BASIC16.78■□□□□ 0.28
HMGB1P09429 SLC35G2-201ENST00000393079 1577 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
HMGB1P09429 AAMP-204ENST00000444053 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC16.78■□□□□ 0.28
HMGB1P09429 LINC002481-201ENST00000499502 1821 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
HMGB1P09429 PCDHGA11-201ENST00000398587 4647 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
HMGB1P09429 COX6A2-201ENST00000287490 440 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
HMGB1P09429 MRPS12-201ENST00000308018 1207 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
HMGB1P09429 NCR3-202ENST00000376071 541 ntTSL 5 BASIC16.78■□□□□ 0.28
HMGB1P09429 MOGAT3-202ENST00000379423 933 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
HMGB1P09429 COPS7B-205ENST00000409295 1009 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
HMGB1P09429 AL139158.2-202ENST00000428151 573 ntTSL 3 BASIC16.78■□□□□ 0.28
HMGB1P09429 TAC3-208ENST00000441881 731 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
HMGB1P09429 AC108725.1-201ENST00000495472 409 ntBASIC16.78■□□□□ 0.28
HMGB1P09429 AC097103.2-206ENST00000514729 588 ntTSL 4 BASIC16.78■□□□□ 0.28
HMGB1P09429 CPLX2-209ENST00000515094 576 ntAPPRIS P1 TSL 4 BASIC16.78■□□□□ 0.28
HMGB1P09429 AL136309.4-201ENST00000527831 640 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
HMGB1P09429 NAT9-222ENST00000583476 583 ntTSL 3 BASIC16.78■□□□□ 0.28
HMGB1P09429 ATRAID-207ENST00000606999 956 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
HMGB1P09429 AL118558.3-201ENST00000607414 1079 ntBASIC16.78■□□□□ 0.28
HMGB1P09429 AC138649.2-201ENST00000615886 705 ntBASIC16.78■□□□□ 0.28
HMGB1P09429 TAC3-211ENST00000615887 1120 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 37 ms