Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 KBTBD6-201ENST00000379485 5178 ntAPPRIS P1 BASIC8.79□□□□□ -1
LINC00643Q86TS7 TMEM170A-201ENST00000357613 4959 ntTSL 1 (best) BASIC8.79□□□□□ -1
LINC00643Q86TS7 DENND4C-205ENST00000434457 6718 ntTSL 5 BASIC8.79□□□□□ -1
LINC00643Q86TS7 C17orf51-201ENST00000391411 7914 ntAPPRIS P2 TSL 1 (best) BASIC8.79□□□□□ -1
LINC00643Q86TS7 BTG1-201ENST00000256015 4680 ntAPPRIS P1 TSL 1 (best) BASIC8.79□□□□□ -1
LINC00643Q86TS7 AC007336.3-201ENST00000623886 2160 ntBASIC8.79□□□□□ -1
LINC00643Q86TS7 ZDHHC9-201ENST00000357166 4569 ntAPPRIS P1 TSL 1 (best) BASIC8.79□□□□□ -1
LINC00643Q86TS7 ECHDC2-203ENST00000371522 1509 ntAPPRIS P1 TSL 1 (best) BASIC8.79□□□□□ -1
LINC00643Q86TS7 PPP1R1B-203ENST00000394267 1504 ntTSL 1 (best) BASIC8.79□□□□□ -1
LINC00643Q86TS7 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC8.79□□□□□ -1
LINC00643Q86TS7 MTHFR-203ENST00000376585 8094 ntAPPRIS ALT1 TSL 5 BASIC8.79□□□□□ -1
LINC00643Q86TS7 ATP2A3-203ENST00000359983 3290 ntTSL 5 BASIC8.79□□□□□ -1
LINC00643Q86TS7 MPP4-204ENST00000409143 2082 ntTSL 2 BASIC8.79□□□□□ -1
LINC00643Q86TS7 PRC1-204ENST00000442656 2060 ntTSL 2 BASIC8.79□□□□□ -1
LINC00643Q86TS7 CIART-203ENST00000369095 1433 ntAPPRIS P3 TSL 1 (best) BASIC8.79□□□□□ -1
LINC00643Q86TS7 CCNG2-202ENST00000395640 1410 ntAPPRIS P1 TSL 1 (best) BASIC8.79□□□□□ -1
LINC00643Q86TS7 MRO-203ENST00000428869 1966 ntAPPRIS P1 TSL 5 BASIC8.79□□□□□ -1
LINC00643Q86TS7 MIR194-2HG-201ENST00000413053 3647 ntTSL 2 BASIC8.79□□□□□ -1
LINC00643Q86TS7 IL18BP-209ENST00000497194 4080 ntAPPRIS ALT2 TSL 1 (best) BASIC8.79□□□□□ -1
LINC00643Q86TS7 CDK5RAP3-201ENST00000338399 1866 ntAPPRIS P1 TSL 1 (best) BASIC8.79□□□□□ -1
LINC00643Q86TS7 RIN2-201ENST00000255006 4505 ntAPPRIS P2 TSL 2 BASIC8.79□□□□□ -1
LINC00643Q86TS7 FOXO4-202ENST00000374259 3301 ntAPPRIS P1 TSL 1 (best) BASIC8.79□□□□□ -1
LINC00643Q86TS7 TIAF1-201ENST00000359450 5337 ntAPPRIS P1 BASIC8.78□□□□□ -1
LINC00643Q86TS7 AAMP-202ENST00000420660 1761 ntTSL 2 BASIC8.78□□□□□ -1
LINC00643Q86TS7 LRP10-203ENST00000546834 1780 ntAPPRIS ALT2 TSL 5 BASIC8.78□□□□□ -1
LINC00643Q86TS7 ZFP36-203ENST00000597629 1786 ntAPPRIS P2 TSL 1 (best) BASIC8.78□□□□□ -1
LINC00643Q86TS7 GPX3-210ENST00000622181 1757 ntAPPRIS ALT1 TSL 5 BASIC8.78□□□□□ -1
LINC00643Q86TS7 PLEKHA5-203ENST00000429027 4762 ntAPPRIS ALT2 TSL 1 (best) BASIC8.78□□□□□ -1
LINC00643Q86TS7 LINC00473-205ENST00000584911 2212 ntTSL 1 (best) BASIC8.78□□□□□ -1
LINC00643Q86TS7 TMEM164-202ENST00000372068 5566 ntAPPRIS P3 TSL 1 (best) BASIC8.78□□□□□ -1
LINC00643Q86TS7 OTUD6A-201ENST00000338352 1689 ntAPPRIS P1 BASIC8.78□□□□□ -1
LINC00643Q86TS7 PDE9A-207ENST00000398224 1671 ntTSL 1 (best) BASIC8.78□□□□□ -1
LINC00643Q86TS7 PDE9A-210ENST00000398229 1684 ntTSL 1 (best) BASIC8.78□□□□□ -1
LINC00643Q86TS7 AC092117.2-201ENST00000623937 1659 ntBASIC8.78□□□□□ -1
LINC00643Q86TS7 SLC10A1-201ENST00000216540 2049 ntAPPRIS P1 TSL 1 (best) BASIC8.78□□□□□ -1
LINC00643Q86TS7 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC8.78□□□□□ -1
LINC00643Q86TS7 GPR158-201ENST00000376351 6959 ntAPPRIS P1 TSL 1 (best) BASIC8.78□□□□□ -1
LINC00643Q86TS7 AL449403.1-201ENST00000432783 1577 ntTSL 1 (best) BASIC8.78□□□□□ -1
LINC00643Q86TS7 INSC-205ENST00000525218 1576 ntTSL 1 (best) BASIC8.78□□□□□ -1
LINC00643Q86TS7 CORO7-202ENST00000537233 3392 ntTSL 2 BASIC8.78□□□□□ -1
LINC00643Q86TS7 FCHO1-208ENST00000595033 2907 ntTSL 2 BASIC8.78□□□□□ -1
LINC00643Q86TS7 FCHO1-221ENST00000597512 2934 ntTSL 1 (best) BASIC8.78□□□□□ -1
LINC00643Q86TS7 FP565260.1-201ENST00000617716 3264 ntAPPRIS P1 TSL 1 (best) BASIC8.78□□□□□ -1
LINC00643Q86TS7 DCT-202ENST00000446125 2395 ntTSL 1 (best) BASIC8.78□□□□□ -1
LINC00643Q86TS7 SCRN1-207ENST00000434476 1454 ntTSL 2 BASIC8.78□□□□□ -1
LINC00643Q86TS7 CKMT2-203ENST00000437669 1479 ntAPPRIS P1 TSL 5 BASIC8.78□□□□□ -1
LINC00643Q86TS7 ARMCX6-201ENST00000361910 1846 ntAPPRIS P1 TSL 1 (best) BASIC8.78□□□□□ -1
LINC00643Q86TS7 RABGAP1L-207ENST00000367690 1815 ntTSL 2 BASIC8.78□□□□□ -1
LINC00643Q86TS7 LINC01913-201ENST00000398796 1810 ntTSL 2 BASIC8.78□□□□□ -1
LINC00643Q86TS7 SLC12A3-201ENST00000262502 4208 ntAPPRIS ALT2 TSL 5 BASIC8.78□□□□□ -1
LINC00643Q86TS7 PRPH2-201ENST00000230381 2976 ntAPPRIS P1 TSL 1 (best) BASIC8.78□□□□□ -1
LINC00643Q86TS7 LINC02473-201ENST00000569621 2195 ntTSL 2 BASIC8.78□□□□□ -1
LINC00643Q86TS7 FAM78A-202ENST00000372269 3659 ntTSL 1 (best) BASIC8.78□□□□□ -1
LINC00643Q86TS7 ECM1-202ENST00000369047 2070 ntAPPRIS P3 TSL 1 (best) BASIC8.78□□□□□ -1
LINC00643Q86TS7 OR13A1-203ENST00000553795 2078 ntAPPRIS P1 BASIC8.78□□□□□ -1
LINC00643Q86TS7 MAB21L2-201ENST00000317605 2772 ntAPPRIS P1 BASIC8.78□□□□□ -1
LINC00643Q86TS7 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC8.78□□□□□ -1
LINC00643Q86TS7 KLK8-202ENST00000320838 456 ntTSL 5 BASIC8.78□□□□□ -1
LINC00643Q86TS7 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC8.78□□□□□ -1
LINC00643Q86TS7 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC8.78□□□□□ -1
LINC00643Q86TS7 AL845331.1-201ENST00000424978 1190 ntBASIC8.78□□□□□ -1
LINC00643Q86TS7 AC246785.2-201ENST00000432512 513 ntBASIC8.78□□□□□ -1
LINC00643Q86TS7 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC8.78□□□□□ -1
LINC00643Q86TS7 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC8.78□□□□□ -1
LINC00643Q86TS7 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC8.78□□□□□ -1
LINC00643Q86TS7 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC8.78□□□□□ -1
LINC00643Q86TS7 YEATS4-202ENST00000548020 1100 ntTSL 2 BASIC8.78□□□□□ -1
LINC00643Q86TS7 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC8.78□□□□□ -1
LINC00643Q86TS7 AL136295.3-201ENST00000558325 850 ntAPPRIS P1 TSL 5 BASIC8.78□□□□□ -1
LINC00643Q86TS7 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC8.78□□□□□ -1
LINC00643Q86TS7 PAM16-208ENST00000573553 722 ntTSL 2 BASIC8.78□□□□□ -1
LINC00643Q86TS7 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC8.78□□□□□ -1
LINC00643Q86TS7 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC8.78□□□□□ -1
LINC00643Q86TS7 KLK3-204ENST00000593997 1035 ntTSL 1 (best) BASIC8.78□□□□□ -1
LINC00643Q86TS7 AL592071.1-201ENST00000611956 408 ntBASIC8.78□□□□□ -1
LINC00643Q86TS7 PAFAH1B2-204ENST00000527958 4198 ntAPPRIS P1 TSL 1 (best) BASIC8.78□□□□□ -1
LINC00643Q86TS7 USP31-201ENST00000219689 10699 ntAPPRIS P1 TSL 1 (best) BASIC8.78□□□□□ -1
LINC00643Q86TS7 AC015688.4-201ENST00000580780 1647 ntBASIC8.78□□□□□ -1
LINC00643Q86TS7 FAM153B-220ENST00000515817 1966 ntAPPRIS P2 TSL 5 BASIC8.78□□□□□ -1
LINC00643Q86TS7 HIRIP3-201ENST00000279392 3388 ntAPPRIS P1 TSL 1 (best) BASIC8.78□□□□□ -1
LINC00643Q86TS7 STAC2-201ENST00000333461 3362 ntAPPRIS P1 TSL 1 (best) BASIC8.78□□□□□ -1
LINC00643Q86TS7 HEXIM1-201ENST00000332499 3600 ntAPPRIS P1 BASIC8.78□□□□□ -1
LINC00643Q86TS7 ZMIZ1-202ENST00000446377 6686 ntTSL 5 BASIC8.78□□□□□ -1
LINC00643Q86TS7 TNRC6C-202ENST00000335749 9740 ntAPPRIS P4 TSL 5 BASIC8.78□□□□□ -1
LINC00643Q86TS7 TMEM40-204ENST00000435218 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC8.78□□□□□ -1
LINC00643Q86TS7 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC8.78□□□□□ -1
LINC00643Q86TS7 PPP4R1-202ENST00000400555 3885 ntAPPRIS ALT2 TSL 1 (best) BASIC8.78□□□□□ -1
LINC00643Q86TS7 PLPPR1-201ENST00000374874 2495 ntAPPRIS P1 TSL 1 (best) BASIC8.78□□□□□ -1
LINC00643Q86TS7 LAMB1-204ENST00000393561 5766 ntTSL 5 BASIC8.78□□□□□ -1
LINC00643Q86TS7 TNRC6B-203ENST00000402203 3444 ntAPPRIS P3 TSL 1 (best) BASIC8.78□□□□□ -1
LINC00643Q86TS7 RFX5-215ENST00000452671 2355 ntAPPRIS P1 TSL 1 (best) BASIC8.78□□□□□ -1
LINC00643Q86TS7 AC133065.6-201ENST00000625054 2378 ntBASIC8.78□□□□□ -1
LINC00643Q86TS7 PLCG2-207ENST00000564138 8707 ntAPPRIS P1 TSL 1 (best) BASIC8.78□□□□□ -1
LINC00643Q86TS7 VCL-202ENST00000372755 6489 ntAPPRIS ALT1 TSL 1 (best) BASIC8.78□□□□□ -1
LINC00643Q86TS7 POLR2J4-202ENST00000427076 6466 ntTSL 1 (best) BASIC8.78□□□□□ -1
LINC00643Q86TS7 USP33-204ENST00000370794 4327 ntAPPRIS P1 TSL 1 (best) BASIC8.78□□□□□ -1
LINC00643Q86TS7 LINC01159-201ENST00000433433 3103 ntTSL 2 BASIC8.78□□□□□ -1
LINC00643Q86TS7 AOC1-207ENST00000493429 3135 ntAPPRIS P1 TSL 5 BASIC8.78□□□□□ -1
LINC00643Q86TS7 INTS4P1-201ENST00000438455 1935 ntBASIC8.78□□□□□ -1
LINC00643Q86TS7 NANP-201ENST00000304788 3964 ntAPPRIS P1 TSL 1 (best) BASIC8.78□□□□□ -1
Retrieved 100 of 98,524 protein–RNA pairs in 49.4 ms