Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 LIMK2-204ENST00000406516 2657 ntTSL 5 BASIC13.79□□□□□ -0.2
COL28A1Q2UY09 WWC2-201ENST00000403733 8826 ntAPPRIS P1 TSL 5 BASIC13.79□□□□□ -0.2
COL28A1Q2UY09 ZEB2-225ENST00000558170 4012 ntAPPRIS P2 TSL 1 (best) BASIC13.79□□□□□ -0.2
COL28A1Q2UY09 PARP10-201ENST00000313028 3497 ntAPPRIS P3 TSL 1 (best) BASIC13.79□□□□□ -0.2
COL28A1Q2UY09 SF1-209ENST00000433274 2317 ntTSL 2 BASIC13.79□□□□□ -0.2
COL28A1Q2UY09 IL17RD-203ENST00000463523 2348 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
COL28A1Q2UY09 SPRED1-201ENST00000299084 7780 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
COL28A1Q2UY09 TRAPPC8-201ENST00000283351 6226 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
COL28A1Q2UY09 HENMT1-202ENST00000370032 1874 ntAPPRIS P2 TSL 1 (best) BASIC13.79□□□□□ -0.2
COL28A1Q2UY09 ZNF226-201ENST00000300823 817 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
COL28A1Q2UY09 NHP2P1-201ENST00000335274 462 ntBASIC13.79□□□□□ -0.2
COL28A1Q2UY09 CTSL-202ENST00000342020 933 ntTSL 2 BASIC13.79□□□□□ -0.2
COL28A1Q2UY09 MANEA-202ENST00000369293 1076 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
COL28A1Q2UY09 BANF1P3-201ENST00000412556 261 ntBASIC13.79□□□□□ -0.2
COL28A1Q2UY09 AC097059.1-201ENST00000413103 885 ntTSL 5 BASIC13.79□□□□□ -0.2
COL28A1Q2UY09 AC254562.2-201ENST00000428786 667 ntTSL 3 BASIC13.79□□□□□ -0.2
COL28A1Q2UY09 AL589986.1-201ENST00000429230 789 ntTSL 5 BASIC13.79□□□□□ -0.2
COL28A1Q2UY09 RPSAP15-201ENST00000448168 861 ntBASIC13.79□□□□□ -0.2
COL28A1Q2UY09 LINC00173-201ENST00000470091 435 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
COL28A1Q2UY09 AC026434.2-201ENST00000506094 1078 ntBASIC13.79□□□□□ -0.2
COL28A1Q2UY09 TMEM223-202ENST00000525631 736 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
COL28A1Q2UY09 AC129102.1-201ENST00000535755 525 ntTSL 4 BASIC13.79□□□□□ -0.2
COL28A1Q2UY09 AC005845.1-201ENST00000539206 653 ntTSL 3 BASIC13.79□□□□□ -0.2
COL28A1Q2UY09 CCDC86-203ENST00000545580 697 ntAPPRIS ALT2 TSL 3 BASIC13.79□□□□□ -0.2
COL28A1Q2UY09 TUBB3-208ENST00000555576 572 ntTSL 4 BASIC13.79□□□□□ -0.2
COL28A1Q2UY09 OCEL1-206ENST00000597836 1044 ntAPPRIS ALT2 TSL 2 BASIC13.79□□□□□ -0.2
COL28A1Q2UY09 PTOV1-AS2-203ENST00000601893 719 ntTSL 4 BASIC13.79□□□□□ -0.2
COL28A1Q2UY09 Z98259.2-201ENST00000641583 609 ntBASIC13.79□□□□□ -0.2
COL28A1Q2UY09 GLIS2-201ENST00000262366 4469 ntAPPRIS P1 TSL 2 BASIC13.79□□□□□ -0.2
COL28A1Q2UY09 CNTFR-204ENST00000610543 1926 ntAPPRIS P1 TSL 5 BASIC13.79□□□□□ -0.2
COL28A1Q2UY09 RSPH9-202ENST00000372165 2586 ntTSL 2 BASIC13.79□□□□□ -0.2
COL28A1Q2UY09 NYNRIN-201ENST00000382554 7857 ntAPPRIS P1 TSL 5 BASIC13.79□□□□□ -0.2
COL28A1Q2UY09 PCNX4-203ENST00000406854 4666 ntAPPRIS ALT2 TSL 5 BASIC13.79□□□□□ -0.2
COL28A1Q2UY09 TPGS2-201ENST00000334295 4030 ntAPPRIS P3 TSL 1 (best) BASIC13.79□□□□□ -0.2
COL28A1Q2UY09 NDUFB6-203ENST00000379847 1366 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
COL28A1Q2UY09 IL1F10-202ENST00000393197 1366 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
COL28A1Q2UY09 ID2-203ENST00000396290 1362 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
COL28A1Q2UY09 SLC25A35-201ENST00000380067 2785 ntTSL 2 BASIC13.79□□□□□ -0.2
COL28A1Q2UY09 NUP50-201ENST00000347635 5233 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
COL28A1Q2UY09 C1orf159-202ENST00000379320 2324 ntAPPRIS ALT2 TSL 2 BASIC13.79□□□□□ -0.2
COL28A1Q2UY09 ECE1-201ENST00000264205 2381 ntAPPRIS P4 TSL 1 (best) BASIC13.79□□□□□ -0.2
COL28A1Q2UY09 KIF6-203ENST00000394362 2394 ntTSL 5 BASIC13.79□□□□□ -0.2
COL28A1Q2UY09 ABCB8-201ENST00000297504 2487 ntTSL 2 BASIC13.79□□□□□ -0.2
COL28A1Q2UY09 NAA60-229ENST00000575076 2531 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
COL28A1Q2UY09 TPGS2-202ENST00000383056 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
COL28A1Q2UY09 GINS3-203ENST00000426538 1728 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
COL28A1Q2UY09 PEX5-207ENST00000455147 2689 ntAPPRIS P1 TSL 2 BASIC13.78□□□□□ -0.2
COL28A1Q2UY09 ITSN2-203ENST00000406921 4563 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
COL28A1Q2UY09 HOXA3-201ENST00000317201 2761 ntAPPRIS P1 TSL 5 BASIC13.78□□□□□ -0.2
COL28A1Q2UY09 NRBF2-201ENST00000277746 1853 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
COL28A1Q2UY09 GRB7-203ENST00000394209 1955 ntAPPRIS P1 TSL 2 BASIC13.78□□□□□ -0.2
COL28A1Q2UY09 PTPN20-206ENST00000395722 1995 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
COL28A1Q2UY09 TBPL2-201ENST00000247219 2037 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
COL28A1Q2UY09 WDR1-203ENST00000382452 3142 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
COL28A1Q2UY09 SERP1-201ENST00000239944 3171 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
COL28A1Q2UY09 AC023090.2-201ENST00000625182 2110 ntBASIC13.78□□□□□ -0.2
COL28A1Q2UY09 ZNF256-201ENST00000282308 2172 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
COL28A1Q2UY09 LARGE1-201ENST00000354992 4409 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
COL28A1Q2UY09 P2RY1-201ENST00000305097 6747 ntAPPRIS P1 BASIC13.78□□□□□ -0.2
COL28A1Q2UY09 COL6A2-201ENST00000300527 3461 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
COL28A1Q2UY09 PLAC8L1-201ENST00000311450 638 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
COL28A1Q2UY09 ZNRD1-203ENST00000376782 736 ntAPPRIS P1 TSL 2 BASIC13.78□□□□□ -0.2
COL28A1Q2UY09 RPA3-202ENST00000396682 847 ntAPPRIS P1 TSL 3 BASIC13.78□□□□□ -0.2
COL28A1Q2UY09 AL391832.2-203ENST00000423175 554 ntTSL 3 BASIC13.78□□□□□ -0.2
COL28A1Q2UY09 AC156455.1-203ENST00000423999 893 ntTSL 2 BASIC13.78□□□□□ -0.2
COL28A1Q2UY09 LINC00431-201ENST00000440735 1189 ntTSL 5 BASIC13.78□□□□□ -0.2
COL28A1Q2UY09 APCDD1L-AS1-206ENST00000445984 566 ntTSL 3 BASIC13.78□□□□□ -0.2
COL28A1Q2UY09 APCDD1L-AS1-208ENST00000448374 546 ntTSL 4 BASIC13.78□□□□□ -0.2
COL28A1Q2UY09 AL139010.1-202ENST00000452528 1041 ntTSL 2 BASIC13.78□□□□□ -0.2
COL28A1Q2UY09 ROPN1B-203ENST00000505382 713 ntTSL 2 BASIC13.78□□□□□ -0.2
COL28A1Q2UY09 GFER-204ENST00000567719 483 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
COL28A1Q2UY09 AP000322.3-201ENST00000608665 388 ntBASIC13.78□□□□□ -0.2
COL28A1Q2UY09 CD79B-201ENST00000006750 1269 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
COL28A1Q2UY09 KHNYN-201ENST00000251343 6725 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
COL28A1Q2UY09 CD74-202ENST00000353334 1449 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
COL28A1Q2UY09 ALG11-203ENST00000523764 1404 ntTSL 2 BASIC13.78□□□□□ -0.2
COL28A1Q2UY09 PLEKHB2-207ENST00000438882 1460 ntTSL 2 BASIC13.78□□□□□ -0.2
COL28A1Q2UY09 EHF-210ENST00000531794 1481 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
COL28A1Q2UY09 LINC01229-201ENST00000561510 1494 ntTSL 5 BASIC13.78□□□□□ -0.2
COL28A1Q2UY09 ADSL-201ENST00000216194 1620 ntTSL 2 BASIC13.78□□□□□ -0.2
COL28A1Q2UY09 FARS2-202ENST00000324331 1692 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
COL28A1Q2UY09 OTUD6A-201ENST00000338352 1689 ntAPPRIS P1 BASIC13.78□□□□□ -0.2
COL28A1Q2UY09 FAM114A2-215ENST00000522858 3379 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
COL28A1Q2UY09 STEAP2-201ENST00000287908 6873 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
COL28A1Q2UY09 FXYD6-207ENST00000527717 1799 ntAPPRIS P2 TSL 2 BASIC13.78□□□□□ -0.2
COL28A1Q2UY09 PRDM16-203ENST00000378391 5447 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
COL28A1Q2UY09 MRPS17-201ENST00000285298 1845 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
COL28A1Q2UY09 BVES-201ENST00000314641 5567 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
COL28A1Q2UY09 TLX1NB-202ENST00000445873 1862 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
COL28A1Q2UY09 SAPCD2-201ENST00000409687 3848 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
COL28A1Q2UY09 APBB1-219ENST00000608704 2095 ntTSL 5 BASIC13.78□□□□□ -0.2
COL28A1Q2UY09 NPFFR1-201ENST00000277942 8921 ntAPPRIS P1 TSL 5 BASIC13.78□□□□□ -0.2
COL28A1Q2UY09 ASPG-206ENST00000551177 4851 ntAPPRIS P2 TSL 1 (best) BASIC13.78□□□□□ -0.2
COL28A1Q2UY09 WDR27-201ENST00000423258 2465 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
COL28A1Q2UY09 FGD5P1-202ENST00000614866 2498 ntBASIC13.78□□□□□ -0.2
COL28A1Q2UY09 MVB12B-206ENST00000489637 2666 ntTSL 1 (best) BASIC13.77□□□□□ -0.2
COL28A1Q2UY09 AMACR-203ENST00000382072 2919 ntTSL 1 (best) BASIC13.77□□□□□ -0.2
COL28A1Q2UY09 RBPMS-202ENST00000320203 3110 ntAPPRIS P3 TSL 1 (best) BASIC13.77□□□□□ -0.2
COL28A1Q2UY09 DNAJC14-203ENST00000357606 3416 ntAPPRIS P1 TSL 5 BASIC13.77□□□□□ -0.2
COL28A1Q2UY09 FOXRED2-201ENST00000216187 3933 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 35.2 ms