Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 GRHL1-202ENST00000405379 1881 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
HDAC4P56524 CELF1-214ENST00000531165 3650 ntTSL 2 BASIC14.95□□□□□ -0.02
HDAC4P56524 DDO-202ENST00000368924 2130 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
HDAC4P56524 RAB18-207ENST00000535776 4811 ntTSL 2 BASIC14.95□□□□□ -0.02
HDAC4P56524 SEC13-208ENST00000397109 1467 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
HDAC4P56524 AC007952.5-201ENST00000572818 1486 ntBASIC14.95□□□□□ -0.02
HDAC4P56524 SP8-203ENST00000617581 3496 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
HDAC4P56524 TMUB2-211ENST00000589184 1837 ntTSL 5 BASIC14.94□□□□□ -0.02
HDAC4P56524 FBXL16-201ENST00000324361 3411 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
HDAC4P56524 POLM-202ENST00000335195 2444 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
HDAC4P56524 ATXN7L1-207ENST00000477775 2426 ntTSL 2 BASIC14.94□□□□□ -0.02
HDAC4P56524 ZBP1-201ENST00000371173 2195 ntAPPRIS P3 TSL 1 (best) BASIC14.94□□□□□ -0.02
HDAC4P56524 TMEM45A-202ENST00000403410 1910 ntTSL 5 BASIC14.94□□□□□ -0.02
HDAC4P56524 BORCS8-202ENST00000462790 1429 ntAPPRIS P3 TSL 1 (best) BASIC14.94□□□□□ -0.02
HDAC4P56524 PLSCR1-214ENST00000487389 1443 ntAPPRIS ALT2 TSL 5 BASIC14.94□□□□□ -0.02
HDAC4P56524 TFCP2-201ENST00000257915 3546 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
HDAC4P56524 ZFP64-203ENST00000361387 2545 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
HDAC4P56524 C17orf53-201ENST00000245382 2272 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
HDAC4P56524 PRR30-201ENST00000335524 2008 ntAPPRIS P2 TSL 1 (best) BASIC14.94□□□□□ -0.02
HDAC4P56524 DDX20-201ENST00000369702 4212 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
HDAC4P56524 NOSIP-201ENST00000339093 1000 ntAPPRIS ALT1 TSL 5 BASIC14.94□□□□□ -0.02
HDAC4P56524 UROS-203ENST00000368786 1216 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
HDAC4P56524 CLIC1-206ENST00000375779 1127 ntAPPRIS P1 TSL 5 BASIC14.94□□□□□ -0.02
HDAC4P56524 ZNF564-202ENST00000416136 255 ntTSL 3 BASIC14.94□□□□□ -0.02
HDAC4P56524 CSTF3-202ENST00000431742 715 ntTSL 2 BASIC14.94□□□□□ -0.02
HDAC4P56524 AC006033.1-201ENST00000440505 426 ntBASIC14.94□□□□□ -0.02
HDAC4P56524 AGTRAP-206ENST00000452018 809 ntTSL 2 BASIC14.94□□□□□ -0.02
HDAC4P56524 AC092658.1-201ENST00000505836 891 ntBASIC14.94□□□□□ -0.02
HDAC4P56524 ETV4-203ENST00000538265 2147 ntTSL 2 BASIC14.94□□□□□ -0.02
HDAC4P56524 AC011603.2-203ENST00000547387 897 ntTSL 3 BASIC14.94□□□□□ -0.02
HDAC4P56524 AC123786.1-201ENST00000581626 661 ntTSL 3 BASIC14.94□□□□□ -0.02
HDAC4P56524 PSENEN-203ENST00000591949 833 ntTSL 2 BASIC14.94□□□□□ -0.02
HDAC4P56524 AL022328.3-201ENST00000607943 679 ntBASIC14.94□□□□□ -0.02
HDAC4P56524 AL358473.2-201ENST00000610411 556 ntTSL 4 BASIC14.94□□□□□ -0.02
HDAC4P56524 MIR6869-201ENST00000619434 62 ntBASIC14.94□□□□□ -0.02
HDAC4P56524 LRWD1-209ENST00000626402 138 ntTSL 3 BASIC14.94□□□□□ -0.02
HDAC4P56524 AC118758.2-201ENST00000614242 2813 ntBASIC14.94□□□□□ -0.02
HDAC4P56524 PHTF2-206ENST00000422959 3525 ntAPPRIS P4 TSL 5 BASIC14.94□□□□□ -0.02
HDAC4P56524 CTBP1-AS2-206ENST00000581398 5652 ntBASIC14.94□□□□□ -0.02
HDAC4P56524 PCDH10-203ENST00000618019 4574 ntAPPRIS ALT2 BASIC14.94□□□□□ -0.02
HDAC4P56524 ABCC6-208ENST00000622290 4941 ntTSL 5 BASIC14.94□□□□□ -0.02
HDAC4P56524 MAPK12-203ENST00000395780 1459 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
HDAC4P56524 CDK20-201ENST00000325303 2175 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
HDAC4P56524 ZNF711-201ENST00000276123 2887 ntAPPRIS P3 TSL 1 (best) BASIC14.94□□□□□ -0.02
HDAC4P56524 ADAMTSL1-204ENST00000380545 1562 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
HDAC4P56524 AC079447.1-201ENST00000424491 1947 ntAPPRIS P1 TSL 2 BASIC14.94□□□□□ -0.02
HDAC4P56524 TET3-201ENST00000305799 5174 ntTSL 5 BASIC14.94□□□□□ -0.02
HDAC4P56524 ZBTB7B-207ENST00000535420 3777 ntAPPRIS P3 TSL 5 BASIC14.94□□□□□ -0.02
HDAC4P56524 MINDY4-201ENST00000265299 2733 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
HDAC4P56524 KIAA0319-203ENST00000535378 6896 ntAPPRIS ALT2 TSL 2 BASIC14.93□□□□□ -0.02
HDAC4P56524 LINC00963-203ENST00000423918 1654 ntTSL 2 BASIC14.93□□□□□ -0.02
HDAC4P56524 LBHD1-201ENST00000354588 1320 ntAPPRIS P2 TSL 1 (best) BASIC14.93□□□□□ -0.02
HDAC4P56524 UBE3A-224ENST00000635914 9352 ntTSL 5 BASIC14.93□□□□□ -0.02
HDAC4P56524 HNRNPUL1-204ENST00000392006 3555 ntAPPRIS P2 TSL 1 (best) BASIC14.93□□□□□ -0.02
HDAC4P56524 KRT75-201ENST00000252245 2324 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
HDAC4P56524 BAIAP3-202ENST00000397488 4583 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
HDAC4P56524 ALG3-205ENST00000445626 1533 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
HDAC4P56524 HIST2H2BF-201ENST00000369167 1954 ntAPPRIS P1 BASIC14.93□□□□□ -0.02
HDAC4P56524 RAB11FIP1-206ENST00000524118 1959 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
HDAC4P56524 CDK20-202ENST00000336654 2176 ntTSL 2 BASIC14.93□□□□□ -0.02
HDAC4P56524 AC023794.5-201ENST00000564380 2157 ntBASIC14.93□□□□□ -0.02
HDAC4P56524 USP39-220ENST00000613444 2161 ntTSL 2 BASIC14.93□□□□□ -0.02
HDAC4P56524 OR2A25-202ENST00000641441 1733 ntAPPRIS P1 BASIC14.93□□□□□ -0.02
HDAC4P56524 RAB40AL-201ENST00000218249 1029 ntAPPRIS P1 BASIC14.93□□□□□ -0.02
HDAC4P56524 C19orf18-201ENST00000314391 915 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
HDAC4P56524 VAMP8-203ENST00000432071 664 ntTSL 3 BASIC14.93□□□□□ -0.02
HDAC4P56524 AC244250.1-201ENST00000438185 451 ntTSL 2 BASIC14.93□□□□□ -0.02
HDAC4P56524 KRT18P15-201ENST00000458108 1291 ntBASIC14.93□□□□□ -0.02
HDAC4P56524 PRSS30P-202ENST00000475030 752 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
HDAC4P56524 PRSS30P-205ENST00000506153 699 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
HDAC4P56524 SELENOW-201ENST00000509570 881 ntTSL 5 BASIC14.93□□□□□ -0.02
HDAC4P56524 ZNF767P-206ENST00000513792 565 ntBASIC14.93□□□□□ -0.02
HDAC4P56524 ANO1-AS1-201ENST00000524987 646 ntTSL 3 BASIC14.93□□□□□ -0.02
HDAC4P56524 AP001007.1-201ENST00000526796 645 ntTSL 2 BASIC14.93□□□□□ -0.02
HDAC4P56524 AC009065.3-201ENST00000562027 627 ntTSL 5 BASIC14.93□□□□□ -0.02
HDAC4P56524 SELENOW-204ENST00000595615 535 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
HDAC4P56524 SELENOW-216ENST00000612212 875 ntTSL 5 BASIC14.93□□□□□ -0.02
HDAC4P56524 ZCCHC4-206ENST00000612982 938 ntTSL 5 BASIC14.93□□□□□ -0.02
HDAC4P56524 STRC-205ENST00000450892 5680 ntAPPRIS P2 TSL 5 BASIC14.93□□□□□ -0.02
HDAC4P56524 CERS6-202ENST00000392687 6851 ntAPPRIS ALT1 TSL 1 (best) BASIC14.93□□□□□ -0.02
HDAC4P56524 AC111170.3-201ENST00000624282 2464 ntBASIC14.93□□□□□ -0.02
HDAC4P56524 MYLK-201ENST00000346322 5892 ntAPPRIS ALT2 TSL 5 BASIC14.93□□□□□ -0.02
HDAC4P56524 AP3M2-201ENST00000174653 3661 ntAPPRIS P1 TSL 5 BASIC14.93□□□□□ -0.02
HDAC4P56524 ZNRD1ASP-217ENST00000437417 1497 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
HDAC4P56524 PAPPA-201ENST00000328252 10959 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
HDAC4P56524 PIP5K1B-208ENST00000541509 2664 ntTSL 2 BASIC14.93□□□□□ -0.02
HDAC4P56524 KIF21B-201ENST00000332129 9897 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
HDAC4P56524 CRMP1-205ENST00000512574 2764 ntTSL 2 BASIC14.93□□□□□ -0.02
HDAC4P56524 EIF5-202ENST00000392715 3417 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
HDAC4P56524 CYB5D2-203ENST00000575251 1588 ntTSL 2 BASIC14.93□□□□□ -0.02
HDAC4P56524 GPR83-201ENST00000243673 4282 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
HDAC4P56524 LIMS2-209ENST00000410038 1695 ntTSL 2 BASIC14.93□□□□□ -0.02
HDAC4P56524 CUL1-201ENST00000325222 3064 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
HDAC4P56524 SFMBT2-203ENST00000379713 2402 ntTSL 2 BASIC14.93□□□□□ -0.02
HDAC4P56524 CFAP157-206ENST00000614677 1796 ntAPPRIS ALT2 TSL 2 BASIC14.93□□□□□ -0.02
HDAC4P56524 CPNE2-204ENST00000565874 1976 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
HDAC4P56524 RIOK3-207ENST00000581585 1966 ntTSL 2 BASIC14.93□□□□□ -0.02
HDAC4P56524 MTG2-201ENST00000370823 2929 ntAPPRIS P1 TSL 5 BASIC14.93□□□□□ -0.02
HDAC4P56524 SYNRG-217ENST00000612223 8229 ntAPPRIS P4 TSL 1 (best) BASIC14.92□□□□□ -0.02
HDAC4P56524 RMDN3-201ENST00000260385 3138 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 63.6 ms