Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 AL021707.6-201ENST00000609212 491 ntBASIC15.03■□□□□ -0
BDNFP23560 TOMM7-207ENST00000621567 241 ntAPPRIS ALT1 TSL 5 BASIC15.03■□□□□ -0
BDNFP23560 CHD1L-211ENST00000639534 1144 ntTSL 5 BASIC15.03■□□□□ -0
BDNFP23560 EFHC1-230ENST00000637263 2089 ntTSL 5 BASIC15.03■□□□□ -0
BDNFP23560 STK17B-201ENST00000263955 5287 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
BDNFP23560 AC152010.1-201ENST00000415779 2006 ntBASIC15.03■□□□□ -0
BDNFP23560 POLR2E-213ENST00000615234 2831 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
BDNFP23560 KRBOX4-202ENST00000344302 2774 ntAPPRIS ALT2 TSL 2 BASIC15.03■□□□□ -0
BDNFP23560 MCRS1-211ENST00000550165 1936 ntAPPRIS P1 TSL 5 BASIC15.03■□□□□ -0
BDNFP23560 SLC16A9-202ENST00000395348 4178 ntAPPRIS P1 TSL 5 BASIC15.03■□□□□ -0
BDNFP23560 LINC01662-201ENST00000342888 1859 ntTSL 2 BASIC15.03■□□□□ -0
BDNFP23560 CCHCR1-201ENST00000376266 2625 ntAPPRIS P3 TSL 1 (best) BASIC15.03■□□□□ -0
BDNFP23560 WBP4-201ENST00000379487 2623 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
BDNFP23560 C16orf45-202ENST00000452191 1865 ntTSL 1 (best) BASIC15.03■□□□□ -0
BDNFP23560 PLXNC1-202ENST00000545312 1813 ntTSL 1 (best) BASIC15.03■□□□□ -0
BDNFP23560 HIC2-202ENST00000407598 4734 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
BDNFP23560 AC117489.1-201ENST00000625169 3217 ntBASIC15.03■□□□□ -0
BDNFP23560 RASGEF1C-202ENST00000393371 2395 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
BDNFP23560 LRRFIP1-202ENST00000289175 3709 ntAPPRIS ALT2 TSL 1 (best) BASIC15.03■□□□□ -0
BDNFP23560 NEK10-206ENST00000429845 4250 ntAPPRIS P1 TSL 5 BASIC15.03■□□□□ -0
BDNFP23560 TADA3-204ENST00000440161 1617 ntAPPRIS P1 TSL 2 BASIC15.03■□□□□ -0
BDNFP23560 GABPA-202ENST00000400075 4814 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
BDNFP23560 MYLIP-201ENST00000349606 2796 ntTSL 1 (best) BASIC15.02■□□□□ -0
BDNFP23560 FAM86B1-203ENST00000448228 2096 ntAPPRIS P2 TSL 5 BASIC15.02■□□□□ -0
BDNFP23560 NPRL3-212ENST00000620134 3203 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
BDNFP23560 FGD5-AS1-202ENST00000424349 3792 ntTSL 1 (best) BASIC15.02■□□□□ -0
BDNFP23560 MEIKIN-205ENST00000616644 1438 ntAPPRIS ALT2 TSL 5 BASIC15.02■□□□□ -0
BDNFP23560 HTR7-202ENST00000336152 3126 ntTSL 1 (best) BASIC15.02■□□□□ -0
BDNFP23560 LOXHD1-203ENST00000398686 1958 ntTSL 1 (best) BASIC15.02■□□□□ -0
BDNFP23560 CSF1-201ENST00000329608 4210 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
BDNFP23560 ANKRD42-201ENST00000260047 2514 ntTSL 1 (best) BASIC15.02■□□□□ -0
BDNFP23560 C15orf52-202ENST00000397536 4717 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02■□□□□ -0
BDNFP23560 OPA1-203ENST00000361715 6384 ntTSL 5 BASIC15.02■□□□□ -0
BDNFP23560 TBC1D1-214ENST00000508802 4119 ntTSL 2 BASIC15.02■□□□□ -0
BDNFP23560 USP38-202ENST00000510377 4135 ntTSL 1 (best) BASIC15.02■□□□□ -0
BDNFP23560 METTL7B-202ENST00000614691 1368 ntTSL 5 BASIC15.02■□□□□ -0
BDNFP23560 ZFP90-209ENST00000570495 4636 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
BDNFP23560 MINPP1-202ENST00000371996 2415 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
BDNFP23560 RAMP3-201ENST00000242249 1323 ntAPPRIS P2 TSL 1 (best) BASIC15.02■□□□□ -0
BDNFP23560 AC103592.1-201ENST00000394513 664 ntBASIC15.02■□□□□ -0
BDNFP23560 AC006987.1-201ENST00000413610 527 ntBASIC15.02■□□□□ -0
BDNFP23560 EFCAB10-201ENST00000460135 717 ntTSL 2 BASIC15.02■□□□□ -0
BDNFP23560 APOC1P1-201ENST00000507983 630 ntTSL 4 BASIC15.02■□□□□ -0
BDNFP23560 AC005740.1-201ENST00000515639 522 ntBASIC15.02■□□□□ -0
BDNFP23560 LY6E-208ENST00000520531 490 ntTSL 2 BASIC15.02■□□□□ -0
BDNFP23560 SAP25-201ENST00000538735 837 ntAPPRIS P2 TSL 3 BASIC15.02■□□□□ -0
BDNFP23560 LINC01154-201ENST00000548617 454 ntTSL 3 BASIC15.02■□□□□ -0
BDNFP23560 FOS-204ENST00000554617 796 ntTSL 2 BASIC15.02■□□□□ -0
BDNFP23560 AC138894.2-201ENST00000602838 371 ntBASIC15.02■□□□□ -0
BDNFP23560 AC005632.3-201ENST00000605544 308 ntBASIC15.02■□□□□ -0
BDNFP23560 C4A-259ENST00000498271 5269 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
BDNFP23560 ANKRD13B-201ENST00000394859 3214 ntAPPRIS P1 TSL 2 BASIC15.02□□□□□ -0.01
BDNFP23560 ADAM23-202ENST00000374415 2714 ntAPPRIS ALT1 TSL 5 BASIC15.02□□□□□ -0.01
BDNFP23560 EPAS1-201ENST00000263734 5166 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
BDNFP23560 UBQLN1-202ENST00000376395 4118 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
BDNFP23560 UCKL1-AS1-201ENST00000623569 3602 ntBASIC15.02□□□□□ -0.01
BDNFP23560 ZDHHC8-201ENST00000320602 3072 ntTSL 5 BASIC15.02□□□□□ -0.01
BDNFP23560 LINC01230-201ENST00000625222 3017 ntBASIC15.02□□□□□ -0.01
BDNFP23560 PPFIA3-203ENST00000602351 4341 ntTSL 5 BASIC15.02□□□□□ -0.01
BDNFP23560 PKD1P6-NPIPP1-202ENST00000605794 2902 ntTSL 2 BASIC15.02□□□□□ -0.01
BDNFP23560 AC067750.1-201ENST00000608826 6545 ntBASIC15.02□□□□□ -0.01
BDNFP23560 MEF2D-201ENST00000348159 5965 ntAPPRIS P3 TSL 1 (best) BASIC15.02□□□□□ -0.01
BDNFP23560 PRSS30P-201ENST00000390681 2881 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
BDNFP23560 IL18BP-205ENST00000393705 1549 ntAPPRIS P2 TSL 1 (best) BASIC15.02□□□□□ -0.01
BDNFP23560 SFMBT1-201ENST00000394752 4548 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
BDNFP23560 HOXA3-201ENST00000317201 2761 ntAPPRIS P1 TSL 5 BASIC15.02□□□□□ -0.01
BDNFP23560 CSRNP2-201ENST00000228515 4471 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
BDNFP23560 WIZ-203ENST00000545156 4466 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02□□□□□ -0.01
BDNFP23560 CNTNAP3-202ENST00000358144 4885 ntTSL 5 BASIC15.01□□□□□ -0.01
BDNFP23560 FOXF1-201ENST00000262426 3516 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
BDNFP23560 NEIL2-201ENST00000284503 2671 ntAPPRIS P1 TSL 2 BASIC15.01□□□□□ -0.01
BDNFP23560 RNF222-202ENST00000399398 3062 ntAPPRIS P1 TSL 5 BASIC15.01□□□□□ -0.01
BDNFP23560 SLC26A8-201ENST00000355574 3463 ntAPPRIS P1 TSL 2 BASIC15.01□□□□□ -0.01
BDNFP23560 MAGEA4-202ENST00000360243 1773 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
BDNFP23560 MAGEA4-203ENST00000370335 1773 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
BDNFP23560 MAGEA4-204ENST00000370340 1773 ntAPPRIS P1 TSL 5 BASIC15.01□□□□□ -0.01
BDNFP23560 GSG1L-203ENST00000447459 4916 ntAPPRIS P3 TSL 2 BASIC15.01□□□□□ -0.01
BDNFP23560 PDZD7-206ENST00000619208 4135 ntAPPRIS P1 TSL 5 BASIC15.01□□□□□ -0.01
BDNFP23560 ARMCX4-202ENST00000423738 7424 ntAPPRIS P1 TSL 5 BASIC15.01□□□□□ -0.01
BDNFP23560 MOCS3-201ENST00000244051 5106 ntAPPRIS P1 BASIC15.01□□□□□ -0.01
BDNFP23560 AC245100.1-201ENST00000452996 1331 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
BDNFP23560 C12orf49-201ENST00000261318 8404 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
BDNFP23560 C2-205ENST00000418949 1658 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
BDNFP23560 GAK-214ENST00000511163 4280 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
BDNFP23560 FERD3L-201ENST00000275461 640 ntAPPRIS P1 BASIC15.01□□□□□ -0.01
BDNFP23560 MIR33B-201ENST00000385104 96 ntBASIC15.01□□□□□ -0.01
BDNFP23560 TRBJ2-6-201ENST00000390418 53 ntAPPRIS P1 BASIC15.01□□□□□ -0.01
BDNFP23560 RPS9-204ENST00000391753 709 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
BDNFP23560 AL627422.1-201ENST00000434104 580 ntBASIC15.01□□□□□ -0.01
BDNFP23560 AC069218.1-201ENST00000435269 762 ntBASIC15.01□□□□□ -0.01
BDNFP23560 NOC2LP1-201ENST00000450578 752 ntBASIC15.01□□□□□ -0.01
BDNFP23560 LINC01563-201ENST00000456235 750 ntTSL 2 BASIC15.01□□□□□ -0.01
BDNFP23560 KRT18P15-201ENST00000458108 1291 ntBASIC15.01□□□□□ -0.01
BDNFP23560 Z84485.1-202ENST00000499560 1230 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
BDNFP23560 NR2F2-AS1-215ENST00000620029 1223 ntTSL 5 BASIC15.01□□□□□ -0.01
BDNFP23560 LINC00969-294ENST00000627609 992 ntTSL 5 BASIC15.01□□□□□ -0.01
BDNFP23560 CMC2-224ENST00000630396 481 ntTSL 5 BASIC15.01□□□□□ -0.01
BDNFP23560 AL805961.1-201ENST00000642026 753 ntBASIC15.01□□□□□ -0.01
BDNFP23560 ZNF133-203ENST00000377671 2701 ntAPPRIS P3 TSL 1 (best) BASIC15.01□□□□□ -0.01
BDNFP23560 CPNE2-204ENST00000565874 1976 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 44.5 ms