Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 MRPL55-205ENST00000366731 1423 ntTSL 2 BASIC14.61□□□□□ -0.07
HMGA1P17096 LIPE-AS1-204ENST00000594624 1448 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
HMGA1P17096 MON2-201ENST00000393629 5612 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
HMGA1P17096 MYLIP-201ENST00000349606 2796 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
HMGA1P17096 RERG-201ENST00000256953 2264 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
HMGA1P17096 HEXA-206ENST00000566304 1795 ntTSL 2 BASIC14.61□□□□□ -0.07
HMGA1P17096 PRKAB1-201ENST00000229328 2610 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
HMGA1P17096 TIGD1-201ENST00000408957 2625 ntAPPRIS P1 BASIC14.61□□□□□ -0.07
HMGA1P17096 TMEM14C-201ENST00000229563 1113 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
HMGA1P17096 TMEM95-201ENST00000330767 1169 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
HMGA1P17096 AK1-202ENST00000373156 757 ntAPPRIS P1 TSL 3 BASIC14.61□□□□□ -0.07
HMGA1P17096 OR2W2P-201ENST00000406313 909 ntBASIC14.61□□□□□ -0.07
HMGA1P17096 EVA1A-204ENST00000410071 777 ntAPPRIS P2 TSL 3 BASIC14.61□□□□□ -0.07
HMGA1P17096 AC073210.1-201ENST00000414799 232 ntBASIC14.61□□□□□ -0.07
HMGA1P17096 HTATIP2-202ENST00000421577 886 ntAPPRIS P1 TSL 2 BASIC14.61□□□□□ -0.07
HMGA1P17096 FOXP4-AS1-202ENST00000432751 409 ntTSL 2 BASIC14.61□□□□□ -0.07
HMGA1P17096 AC093909.3-201ENST00000504783 336 ntBASIC14.61□□□□□ -0.07
HMGA1P17096 GTF2H2C-210ENST00000510979 2952 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
HMGA1P17096 COQ10BP2-201ENST00000513804 724 ntBASIC14.61□□□□□ -0.07
HMGA1P17096 AC100858.1-201ENST00000514059 1228 ntBASIC14.61□□□□□ -0.07
HMGA1P17096 AC022858.1-202ENST00000521084 393 ntTSL 3 BASIC14.61□□□□□ -0.07
HMGA1P17096 ALG10B-203ENST00000551464 571 ntTSL 3 BASIC14.61□□□□□ -0.07
HMGA1P17096 AC023825.2-201ENST00000562970 672 ntTSL 2 BASIC14.61□□□□□ -0.07
HMGA1P17096 AC008687.1-201ENST00000591656 786 ntAPPRIS P1 TSL 2 BASIC14.61□□□□□ -0.07
HMGA1P17096 AC011462.2-201ENST00000598887 344 ntTSL 5 BASIC14.61□□□□□ -0.07
HMGA1P17096 AC006158.1-201ENST00000610661 249 ntBASIC14.61□□□□□ -0.07
HMGA1P17096 AL451007.2-201ENST00000632004 563 ntBASIC14.61□□□□□ -0.07
HMGA1P17096 IER5-201ENST00000367577 4188 ntAPPRIS P1 BASIC14.61□□□□□ -0.07
HMGA1P17096 CACNA2D3-202ENST00000415676 3661 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
HMGA1P17096 OXTR-201ENST00000316793 4364 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
HMGA1P17096 SLC46A3-201ENST00000266943 3173 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
HMGA1P17096 TMPRSS13-203ENST00000524993 1950 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
HMGA1P17096 AL117190.1-201ENST00000637474 1985 ntTSL 5 BASIC14.61□□□□□ -0.07
HMGA1P17096 NAXD-201ENST00000309957 2659 ntAPPRIS P1 TSL 2 BASIC14.61□□□□□ -0.07
HMGA1P17096 SS18-201ENST00000269137 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC14.61□□□□□ -0.07
HMGA1P17096 SDCBP2-AS1-201ENST00000446423 1811 ntTSL 2 BASIC14.61□□□□□ -0.07
HMGA1P17096 DDC-213ENST00000617822 1809 ntTSL 3 BASIC14.61□□□□□ -0.07
HMGA1P17096 UNQ6494-202ENST00000617436 2163 ntTSL 2 BASIC14.61□□□□□ -0.07
HMGA1P17096 PRSS30P-201ENST00000390681 2881 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
HMGA1P17096 SLC16A3-211ENST00000581287 4830 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
HMGA1P17096 SEMA3G-201ENST00000231721 4899 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
HMGA1P17096 CAMSAP3-202ENST00000446248 4179 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
HMGA1P17096 SLC26A8-201ENST00000355574 3463 ntAPPRIS P1 TSL 2 BASIC14.61□□□□□ -0.07
HMGA1P17096 PLEKHN1-203ENST00000379410 2404 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
HMGA1P17096 SIN3B-202ENST00000379803 5129 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
HMGA1P17096 BCL2L11-219ENST00000619294 5132 ntTSL 5 BASIC14.61□□□□□ -0.07
HMGA1P17096 CAMKV-202ENST00000463537 2818 ntTSL 5 BASIC14.61□□□□□ -0.07
HMGA1P17096 POLR2E-213ENST00000615234 2831 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
HMGA1P17096 FUCA1P1-201ENST00000374476 1351 ntBASIC14.6□□□□□ -0.07
HMGA1P17096 MICALL1-201ENST00000215957 4710 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
HMGA1P17096 RRAGA-201ENST00000380527 1589 ntAPPRIS P1 BASIC14.6□□□□□ -0.07
HMGA1P17096 RALGDS-202ENST00000372050 3634 ntAPPRIS P3 TSL 1 (best) BASIC14.6□□□□□ -0.07
HMGA1P17096 SLC30A4-201ENST00000261867 7157 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
HMGA1P17096 EIF4G1-203ENST00000350481 4990 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
HMGA1P17096 MKNK1-204ENST00000371946 2719 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
HMGA1P17096 TPM4-202ENST00000344824 1417 ntAPPRIS P1 TSL 5 BASIC14.6□□□□□ -0.07
HMGA1P17096 ARFIP1-203ENST00000405727 1601 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
HMGA1P17096 APBB3-201ENST00000354402 1810 ntTSL 5 BASIC14.6□□□□□ -0.07
HMGA1P17096 SPATS2-203ENST00000547865 1810 ntTSL 2 BASIC14.6□□□□□ -0.07
HMGA1P17096 RGP1-201ENST00000378078 7018 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
HMGA1P17096 SH3D21-205ENST00000505871 2205 ntTSL 2 BASIC14.6□□□□□ -0.07
HMGA1P17096 STAMBPL1-204ENST00000371927 4184 ntTSL 2 BASIC14.6□□□□□ -0.07
HMGA1P17096 DCAF13-209ENST00000616836 2639 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
HMGA1P17096 RNF145-212ENST00000611185 3624 ntAPPRIS P1 TSL 5 BASIC14.6□□□□□ -0.07
HMGA1P17096 SNRPC-201ENST00000244520 842 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
HMGA1P17096 EIF3F-201ENST00000309828 1254 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
HMGA1P17096 NSMCE1-201ENST00000361439 1067 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
HMGA1P17096 PLAC9-203ENST00000372270 534 ntAPPRIS ALT2 TSL 2 BASIC14.6□□□□□ -0.07
HMGA1P17096 CUTA-203ENST00000374500 937 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
HMGA1P17096 OR7E115P-201ENST00000382617 1024 ntBASIC14.6□□□□□ -0.07
HMGA1P17096 KRTAP10-5-201ENST00000400372 1150 ntAPPRIS P1 BASIC14.6□□□□□ -0.07
HMGA1P17096 AC006329.1-201ENST00000419422 705 ntTSL 2 BASIC14.6□□□□□ -0.07
HMGA1P17096 ELFN1-201ENST00000424383 3845 ntAPPRIS P1 TSL 5 BASIC14.6□□□□□ -0.07
HMGA1P17096 MOCS1-207ENST00000432280 1071 ntTSL 5 BASIC14.6□□□□□ -0.07
HMGA1P17096 SH3BGR-209ENST00000458295 812 ntTSL 3 BASIC14.6□□□□□ -0.07
HMGA1P17096 FAM3D-AS1-201ENST00000464125 821 ntTSL 3 BASIC14.6□□□□□ -0.07
HMGA1P17096 RN7SL396P-201ENST00000471086 295 ntBASIC14.6□□□□□ -0.07
HMGA1P17096 TROAP-213ENST00000550709 778 ntAPPRIS ALT2 TSL 2 BASIC14.6□□□□□ -0.07
HMGA1P17096 FAM104A-204ENST00000580032 451 ntTSL 3 BASIC14.6□□□□□ -0.07
HMGA1P17096 ATF7-212ENST00000591397 860 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
HMGA1P17096 TMIGD2-204ENST00000600349 333 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
HMGA1P17096 FXYD3-204ENST00000603181 758 ntAPPRIS P1 TSL 3 BASIC14.6□□□□□ -0.07
HMGA1P17096 NOP16-211ENST00000621444 954 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
HMGA1P17096 AL137793.2-201ENST00000632635 659 ntTSL 3 BASIC14.6□□□□□ -0.07
HMGA1P17096 SALL2-205ENST00000611430 1466 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
HMGA1P17096 PGD-201ENST00000270776 1885 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
HMGA1P17096 IQCE-216ENST00000611775 2289 ntAPPRIS ALT2 TSL 2 BASIC14.6□□□□□ -0.07
HMGA1P17096 ASXL1-210ENST00000613218 7038 ntAPPRIS ALT2 TSL 5 BASIC14.6□□□□□ -0.07
HMGA1P17096 ZNF497-201ENST00000311044 3468 ntAPPRIS P1 TSL 2 BASIC14.6□□□□□ -0.07
HMGA1P17096 TRIM67-201ENST00000366653 3936 ntAPPRIS P2 TSL 1 (best) BASIC14.6□□□□□ -0.07
HMGA1P17096 KANK2-207ENST00000589894 2703 ntAPPRIS ALT2 TSL 5 BASIC14.6□□□□□ -0.07
HMGA1P17096 KIF18B-204ENST00000593135 2745 ntAPPRIS P3 TSL 5 BASIC14.6□□□□□ -0.07
HMGA1P17096 PES1P2-201ENST00000449745 1735 ntBASIC14.6□□□□□ -0.07
HMGA1P17096 ZFP1-201ENST00000332307 1502 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
HMGA1P17096 AC003986.1-201ENST00000452700 1526 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
HMGA1P17096 CTBP2P8-201ENST00000422584 1330 ntBASIC14.6□□□□□ -0.07
HMGA1P17096 EPB41L4A-AS1-201ENST00000413221 2969 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
HMGA1P17096 PPP1R26-204ENST00000604351 4640 ntAPPRIS P1 TSL 3 BASIC14.6□□□□□ -0.07
HMGA1P17096 NEO1-201ENST00000261908 7088 ntAPPRIS P3 TSL 1 (best) BASIC14.6□□□□□ -0.07
HMGA1P17096 MFRP-205ENST00000619721 3917 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 39.5 ms