Protein–RNA interactions for Protein: P12004

PCNA, Proliferating cell nuclear antigen, humanhuman

Predictions only

Length 261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCNAP12004 SPRY1-208ENST00000622283 2352 ntAPPRIS P1 TSL 2 BASIC14.02□□□□□ -0.16
PCNAP12004 CPT1B-202ENST00000360719 2319 ntAPPRIS P1 TSL 2 BASIC14.02□□□□□ -0.16
PCNAP12004 TATDN3-201ENST00000366973 2321 ntAPPRIS ALT1 TSL 1 (best) BASIC14.02□□□□□ -0.16
PCNAP12004 NOX5-209ENST00000530406 2289 ntAPPRIS P4 TSL 1 (best) BASIC14.02□□□□□ -0.16
PCNAP12004 SAMD4A-213ENST00000631086 6677 ntTSL 5 BASIC14.02□□□□□ -0.16
PCNAP12004 ETV4-203ENST00000538265 2147 ntTSL 2 BASIC14.02□□□□□ -0.16
PCNAP12004 DUS2-201ENST00000358896 1933 ntAPPRIS P1 TSL 2 BASIC14.02□□□□□ -0.16
PCNAP12004 TINF2-215ENST00000626689 1643 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.16
PCNAP12004 CREB3L4-202ENST00000368600 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.16
PCNAP12004 AC125611.4-201ENST00000553259 4166 ntTSL 2 BASIC14.02□□□□□ -0.17
PCNAP12004 IGHA2-202ENST00000497872 1320 ntAPPRIS P5 TSL 1 (best) BASIC14.02□□□□□ -0.17
PCNAP12004 NPPC-201ENST00000295440 500 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
PCNAP12004 AK6-201ENST00000380818 1183 ntTSL 2 BASIC14.02□□□□□ -0.17
PCNAP12004 TPO-206ENST00000382269 1155 ntTSL 5 BASIC14.02□□□□□ -0.17
PCNAP12004 LINC01939-201ENST00000445279 694 ntTSL 5 BASIC14.02□□□□□ -0.17
PCNAP12004 AL451067.1-201ENST00000453111 394 ntTSL 2 BASIC14.02□□□□□ -0.17
PCNAP12004 LILRA5-204ENST00000486742 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.17
PCNAP12004 AC100850.1-201ENST00000506768 649 ntBASIC14.02□□□□□ -0.17
PCNAP12004 AC105362.1-201ENST00000511234 564 ntTSL 3 BASIC14.02□□□□□ -0.17
PCNAP12004 ANAPC13-205ENST00000511751 896 ntAPPRIS P1 TSL 3 BASIC14.02□□□□□ -0.17
PCNAP12004 FLJ27354-203ENST00000526694 851 ntTSL 2 BASIC14.02□□□□□ -0.17
PCNAP12004 AP001453.3-201ENST00000545800 853 ntTSL 3 BASIC14.02□□□□□ -0.17
PCNAP12004 H2BFM-203ENST00000598335 465 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.17
PCNAP12004 FRMD8-201ENST00000317568 3723 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
PCNAP12004 TCF12-201ENST00000267811 6061 ntAPPRIS ALT1 TSL 1 (best) BASIC14.02□□□□□ -0.17
PCNAP12004 KDM5C-208ENST00000452825 6096 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.17
PCNAP12004 TP53I11-222ENST00000616990 3567 ntAPPRIS P1 TSL 2 BASIC14.02□□□□□ -0.17
PCNAP12004 APBB2-211ENST00000506352 3316 ntAPPRIS ALT1 TSL 5 BASIC14.02□□□□□ -0.17
PCNAP12004 ZNF362-201ENST00000373428 2936 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
PCNAP12004 GJB4-201ENST00000339480 2840 ntAPPRIS P1 TSL 2 BASIC14.02□□□□□ -0.17
PCNAP12004 AC073869.1-201ENST00000415574 2762 ntBASIC14.02□□□□□ -0.17
PCNAP12004 CENPBD1-201ENST00000314994 2744 ntAPPRIS P1 BASIC14.02□□□□□ -0.17
PCNAP12004 MST1-202ENST00000449682 2621 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
PCNAP12004 RUNX3-203ENST00000399916 4340 ntAPPRIS ALT2 TSL 2 BASIC14.02□□□□□ -0.17
PCNAP12004 CLCNKA-202ENST00000375692 2581 ntAPPRIS ALT1 TSL 1 (best) BASIC14.02□□□□□ -0.17
PCNAP12004 RER1-207ENST00000488353 2469 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
PCNAP12004 HBP1-212ENST00000485846 2420 ntAPPRIS P1 TSL 2 BASIC14.02□□□□□ -0.17
PCNAP12004 TLE3-203ENST00000451782 2356 ntAPPRIS ALT1 TSL 5 BASIC14.02□□□□□ -0.17
PCNAP12004 NUP160-201ENST00000378460 5376 ntAPPRIS P2 TSL 1 (best) BASIC14.02□□□□□ -0.17
PCNAP12004 FAM30A-205ENST00000630242 9612 ntTSL 2 BASIC14.02□□□□□ -0.17
PCNAP12004 GLB1L3-201ENST00000389887 3566 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
PCNAP12004 FAM189A1-201ENST00000261275 4705 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.17
PCNAP12004 ZC2HC1A-201ENST00000263849 3352 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
PCNAP12004 GPR84-202ENST00000551809 2041 ntAPPRIS P1 BASIC14.02□□□□□ -0.17
PCNAP12004 PDE9A-208ENST00000398225 1963 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
PCNAP12004 LRRC8C-201ENST00000370454 7218 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
PCNAP12004 ELP4-201ENST00000350638 1907 ntAPPRIS ALT1 TSL 5 BASIC14.02□□□□□ -0.17
PCNAP12004 SPO11-203ENST00000371263 1834 ntAPPRIS P4 TSL 1 (best) BASIC14.01□□□□□ -0.17
PCNAP12004 LIG1-202ENST00000427526 3027 ntAPPRIS ALT2 TSL 2 BASIC14.01□□□□□ -0.17
PCNAP12004 SAFB-211ENST00000592224 3014 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
PCNAP12004 ABCC6P1-201ENST00000546162 2943 ntTSL 2 BASIC14.01□□□□□ -0.17
PCNAP12004 MYD88-201ENST00000396334 2850 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
PCNAP12004 HLA-DPA1-242ENST00000419277 1704 ntAPPRIS P2 BASIC14.01□□□□□ -0.17
PCNAP12004 AC068888.1-207ENST00000546793 2863 ntTSL 2 BASIC14.01□□□□□ -0.17
PCNAP12004 ACSM2A-209ENST00000573854 2837 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
PCNAP12004 SLC9A8-201ENST00000361573 6094 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
PCNAP12004 OTUD4-201ENST00000447906 3829 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
PCNAP12004 APAF1-202ENST00000357310 7055 ntAPPRIS ALT1 TSL 5 BASIC14.01□□□□□ -0.17
PCNAP12004 DMTN-214ENST00000519907 2658 ntTSL 5 BASIC14.01□□□□□ -0.17
PCNAP12004 CAD-202ENST00000403525 6900 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
PCNAP12004 KATNA1-201ENST00000335643 1564 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
PCNAP12004 DEF8-219ENST00000567874 1554 ntTSL 2 BASIC14.01□□□□□ -0.17
PCNAP12004 SMPDL3B-201ENST00000373888 1548 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
PCNAP12004 NXPH3-202ENST00000513748 1530 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
PCNAP12004 KLHL13-204ENST00000371882 3256 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
PCNAP12004 ARAP1-201ENST00000334211 4942 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
PCNAP12004 CASKIN2-202ENST00000433559 3950 ntTSL 2 BASIC14.01□□□□□ -0.17
PCNAP12004 AC064801.2-201ENST00000625052 1303 ntBASIC14.01□□□□□ -0.17
PCNAP12004 MRPL43-206ENST00000370236 866 ntAPPRIS P1 TSL 2 BASIC14.01□□□□□ -0.17
PCNAP12004 MRPL43-207ENST00000370241 824 ntTSL 5 BASIC14.01□□□□□ -0.17
PCNAP12004 C9orf16-201ENST00000372994 713 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
PCNAP12004 SNRPC-202ENST00000374017 1054 ntTSL 2 BASIC14.01□□□□□ -0.17
PCNAP12004 SYNGR1-204ENST00000381535 1295 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
PCNAP12004 MASP2-202ENST00000400898 726 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
PCNAP12004 TISP43-201ENST00000409793 538 ntTSL 4 BASIC14.01□□□□□ -0.17
PCNAP12004 YBX1P6-201ENST00000442962 1002 ntBASIC14.01□□□□□ -0.17
PCNAP12004 AC113608.2-201ENST00000448379 487 ntTSL 3 BASIC14.01□□□□□ -0.17
PCNAP12004 SHANK2-210ENST00000449116 939 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
PCNAP12004 AL139010.1-202ENST00000452528 1041 ntTSL 2 BASIC14.01□□□□□ -0.17
PCNAP12004 AL157935.2-201ENST00000476274 1071 ntTSL 5 BASIC14.01□□□□□ -0.17
PCNAP12004 S100A6-205ENST00000496817 673 ntAPPRIS P1 TSL 2 BASIC14.01□□□□□ -0.17
PCNAP12004 ZFPL1-207ENST00000526791 384 ntTSL 3 BASIC14.01□□□□□ -0.17
PCNAP12004 CACNA2D4-208ENST00000538027 952 ntTSL 5 BASIC14.01□□□□□ -0.17
PCNAP12004 DUX4L46-201ENST00000566845 751 ntBASIC14.01□□□□□ -0.17
PCNAP12004 TNNT1-212ENST00000588981 1163 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
PCNAP12004 AC132192.2-201ENST00000596206 1147 ntBASIC14.01□□□□□ -0.17
PCNAP12004 AC133552.6-201ENST00000613406 534 ntBASIC14.01□□□□□ -0.17
PCNAP12004 C7orf72-201ENST00000297001 2028 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
PCNAP12004 B4GALT3-201ENST00000319769 1911 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
PCNAP12004 RBP1-203ENST00000483943 1935 ntTSL 2 BASIC14.01□□□□□ -0.17
PCNAP12004 ZFP64-203ENST00000361387 2545 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
PCNAP12004 PASK-201ENST00000234040 4572 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
PCNAP12004 ZFP2-201ENST00000361362 2429 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
PCNAP12004 KCNAB2-219ENST00000602612 2396 ntTSL 2 BASIC14.01□□□□□ -0.17
PCNAP12004 SPHK2-201ENST00000245222 2963 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
PCNAP12004 PPCDC-201ENST00000342932 2250 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
PCNAP12004 KIRREL2-203ENST00000360202 2942 ntAPPRIS P4 TSL 1 (best) BASIC14.01□□□□□ -0.17
PCNAP12004 LINC01271-201ENST00000441214 2250 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
PCNAP12004 TGFBR3-204ENST00000465892 2908 ntAPPRIS ALT1 TSL 1 (best) BASIC14.01□□□□□ -0.17
PCNAP12004 DPYSL2-204ENST00000521913 4805 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 84.3 ms