Protein–RNA interactions for Protein: Q9P244

LRFN1, Leucine-rich repeat and fibronectin type III domain-containing protein 1, humanhuman

Predictions only

Length 771 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRFN1Q9P244 CDH20-203ENST00000538374 2683 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
LRFN1Q9P244 LINC00924-202ENST00000556053 2682 ntTSL 2 BASIC13.16□□□□□ -0.3
LRFN1Q9P244 LRIG3-201ENST00000320743 4070 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
LRFN1Q9P244 EVC2-201ENST00000310917 4828 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
LRFN1Q9P244 DNAJC27-207ENST00000534855 4831 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
LRFN1Q9P244 LETMD1-201ENST00000262055 2112 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
LRFN1Q9P244 TAF12-201ENST00000263974 1359 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
LRFN1Q9P244 SLC26A11-202ENST00000411502 2872 ntAPPRIS P1 TSL 2 BASIC13.16□□□□□ -0.3
LRFN1Q9P244 CCDC183-AS1-201ENST00000414656 2386 ntTSL 2 BASIC13.16□□□□□ -0.3
LRFN1Q9P244 LETMD1-203ENST00000418425 2123 ntTSL 2 BASIC13.16□□□□□ -0.3
LRFN1Q9P244 RBM4B-206ENST00000531036 1646 ntTSL 2 BASIC13.16□□□□□ -0.3
LRFN1Q9P244 DACH1-204ENST00000620444 4627 ntAPPRIS ALT2 TSL 5 BASIC13.16□□□□□ -0.3
LRFN1Q9P244 ARRDC4-201ENST00000268042 4072 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
LRFN1Q9P244 TUSC3-201ENST00000382020 3683 ntAPPRIS ALT1 TSL 1 (best) BASIC13.16□□□□□ -0.3
LRFN1Q9P244 AL122018.1-201ENST00000446607 2310 ntBASIC13.16□□□□□ -0.3
LRFN1Q9P244 LDLR-202ENST00000455727 2333 ntTSL 2 BASIC13.16□□□□□ -0.3
LRFN1Q9P244 AL662899.1-201ENST00000461287 2332 ntAPPRIS P1 TSL 2 BASIC13.16□□□□□ -0.3
LRFN1Q9P244 RBM46-204ENST00000514866 2315 ntTSL 2 BASIC13.16□□□□□ -0.3
LRFN1Q9P244 AC113367.3-201ENST00000508316 1912 ntBASIC13.15□□□□□ -0.3
LRFN1Q9P244 PCK2-203ENST00000545054 2505 ntTSL 2 BASIC13.15□□□□□ -0.3
LRFN1Q9P244 CDCA2-201ENST00000330560 3731 ntAPPRIS P3 TSL 1 (best) BASIC13.15□□□□□ -0.3
LRFN1Q9P244 MIOS-201ENST00000340080 3453 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
LRFN1Q9P244 CCNL1-202ENST00000295926 2388 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
LRFN1Q9P244 CPA5-201ENST00000393213 1444 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
LRFN1Q9P244 BIRC2-214ENST00000621637 3331 ntTSL 5 BASIC13.15□□□□□ -0.3
LRFN1Q9P244 SLC4A1-206ENST00000631130 1433 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
LRFN1Q9P244 CICP4-201ENST00000447359 2812 ntBASIC13.15□□□□□ -0.3
LRFN1Q9P244 AC004706.4-201ENST00000634965 3537 ntAPPRIS P1 BASIC13.15□□□□□ -0.3
LRFN1Q9P244 KIR3DL2-201ENST00000270442 1546 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
LRFN1Q9P244 PUS1-202ENST00000376649 4094 ntAPPRIS P3 TSL 1 (best) BASIC13.15□□□□□ -0.3
LRFN1Q9P244 RPN2-202ENST00000373622 2348 ntTSL 2 BASIC13.15□□□□□ -0.3
LRFN1Q9P244 CRYBB1-201ENST00000215939 1102 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
LRFN1Q9P244 PDE6G-201ENST00000331056 1029 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
LRFN1Q9P244 AL512430.1-201ENST00000392575 860 ntBASIC13.15□□□□□ -0.3
LRFN1Q9P244 CD300A-204ENST00000392625 1163 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
LRFN1Q9P244 PFDN6-204ENST00000395131 884 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
LRFN1Q9P244 HPGD-203ENST00000422112 805 ntTSL 2 BASIC13.15□□□□□ -0.3
LRFN1Q9P244 RLN3-201ENST00000431365 580 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
LRFN1Q9P244 IL1R2-203ENST00000441002 1106 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
LRFN1Q9P244 LINC00642-202ENST00000442515 670 ntTSL 3 BASIC13.15□□□□□ -0.3
LRFN1Q9P244 UPK1A-AS1-201ENST00000443196 795 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
LRFN1Q9P244 ARMCX3-AS1-201ENST00000454228 490 ntTSL 3 BASIC13.15□□□□□ -0.3
LRFN1Q9P244 MYLK-AS1-202ENST00000470449 760 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
LRFN1Q9P244 HOXB-AS3-206ENST00000474040 741 ntTSL 3 BASIC13.15□□□□□ -0.3
LRFN1Q9P244 ALG1L13P-202ENST00000519320 584 ntBASIC13.15□□□□□ -0.3
LRFN1Q9P244 WDYHV1-206ENST00000523356 869 ntTSL 3 BASIC13.15□□□□□ -0.3
LRFN1Q9P244 LINC01475-201ENST00000548010 766 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
LRFN1Q9P244 ATP6V1D-206ENST00000554236 888 ntTSL 5 BASIC13.15□□□□□ -0.3
LRFN1Q9P244 SNHG21-204ENST00000559366 674 ntTSL 2 BASIC13.15□□□□□ -0.3
LRFN1Q9P244 MESP2-203ENST00000560219 859 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
LRFN1Q9P244 AC129507.4-201ENST00000570501 411 ntTSL 2 BASIC13.15□□□□□ -0.3
LRFN1Q9P244 MIR3147-201ENST00000577811 66 ntBASIC13.15□□□□□ -0.3
LRFN1Q9P244 NAT9-224ENST00000583757 583 ntTSL 3 BASIC13.15□□□□□ -0.3
LRFN1Q9P244 DHPS-207ENST00000594424 1172 ntTSL 3 BASIC13.15□□□□□ -0.3
LRFN1Q9P244 AC005632.3-201ENST00000605544 308 ntBASIC13.15□□□□□ -0.3
LRFN1Q9P244 E2F6-211ENST00000542100 3450 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
LRFN1Q9P244 ACP2-212ENST00000533929 1366 ntTSL 2 BASIC13.15□□□□□ -0.3
LRFN1Q9P244 FADS2-201ENST00000257261 2964 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
LRFN1Q9P244 PRKD2-201ENST00000291281 3070 ntAPPRIS P3 TSL 1 (best) BASIC13.15□□□□□ -0.3
LRFN1Q9P244 ITGA6-202ENST00000409080 5306 ntTSL 2 BASIC13.15□□□□□ -0.3
LRFN1Q9P244 RNF145-212ENST00000611185 3624 ntAPPRIS P1 TSL 5 BASIC13.15□□□□□ -0.3
LRFN1Q9P244 SPRY4-202ENST00000434127 2379 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
LRFN1Q9P244 IKZF1-218ENST00000615491 5637 ntTSL 5 BASIC13.15□□□□□ -0.3
LRFN1Q9P244 HS3ST5-201ENST00000312719 3901 ntAPPRIS P1 TSL 2 BASIC13.15□□□□□ -0.3
LRFN1Q9P244 HPGD-202ENST00000296522 3027 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
LRFN1Q9P244 PHTF1-202ENST00000369598 3000 ntTSL 5 BASIC13.15□□□□□ -0.3
LRFN1Q9P244 PROSER3-202ENST00000396908 2149 ntAPPRIS P5 TSL 1 (best) BASIC13.15□□□□□ -0.3
LRFN1Q9P244 NBPF3-205ENST00000454000 2133 ntAPPRIS ALT2 TSL 2 BASIC13.15□□□□□ -0.3
LRFN1Q9P244 ABI2-215ENST00000430418 1676 ntTSL 5 BASIC13.15□□□□□ -0.31
LRFN1Q9P244 ORMDL3-202ENST00000394169 2230 ntAPPRIS P1 TSL 2 BASIC13.15□□□□□ -0.31
LRFN1Q9P244 AC005726.3-202ENST00000577814 1316 ntTSL 3 BASIC13.14□□□□□ -0.31
LRFN1Q9P244 PI4K2A-201ENST00000370631 4189 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
LRFN1Q9P244 AL590132.1-202ENST00000638983 4184 ntTSL 5 BASIC13.14□□□□□ -0.31
LRFN1Q9P244 AC108134.1-201ENST00000382225 3061 ntTSL 2 BASIC13.14□□□□□ -0.31
LRFN1Q9P244 CTSL-201ENST00000340342 1436 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
LRFN1Q9P244 LINC01010-201ENST00000431422 2069 ntTSL 2 BASIC13.14□□□□□ -0.31
LRFN1Q9P244 RGS9-202ENST00000443584 2078 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
LRFN1Q9P244 TRIM67-201ENST00000366653 3936 ntAPPRIS P2 TSL 1 (best) BASIC13.14□□□□□ -0.31
LRFN1Q9P244 ZNF683-201ENST00000349618 1610 ntAPPRIS P3 TSL 1 (best) BASIC13.14□□□□□ -0.31
LRFN1Q9P244 BRD1-205ENST00000457780 4997 ntTSL 5 BASIC13.14□□□□□ -0.31
LRFN1Q9P244 TCAIM-201ENST00000342649 3687 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
LRFN1Q9P244 AC009053.1-204ENST00000429810 2355 ntTSL 2 BASIC13.14□□□□□ -0.31
LRFN1Q9P244 NEDD4L-238ENST00000635997 4402 ntTSL 5 BASIC13.14□□□□□ -0.31
LRFN1Q9P244 BRCC3-201ENST00000330045 2496 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
LRFN1Q9P244 ARPP19-202ENST00000561650 3245 ntTSL 2 BASIC13.14□□□□□ -0.31
LRFN1Q9P244 BRD7P5-201ENST00000299197 1822 ntBASIC13.14□□□□□ -0.31
LRFN1Q9P244 CATSPER4-202ENST00000456354 1912 ntAPPRIS P2 TSL 1 (best) BASIC13.14□□□□□ -0.31
LRFN1Q9P244 BAIAP3-202ENST00000397488 4583 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
LRFN1Q9P244 FOXP1-202ENST00000318789 7114 ntAPPRIS P3 TSL 1 (best) BASIC13.14□□□□□ -0.31
LRFN1Q9P244 FOXP1-222ENST00000615603 7140 ntTSL 5 BASIC13.14□□□□□ -0.31
LRFN1Q9P244 RANBP1-201ENST00000331821 837 ntAPPRIS P3 TSL 1 (best) BASIC13.14□□□□□ -0.31
LRFN1Q9P244 ZDHHC4-201ENST00000335965 1259 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
LRFN1Q9P244 MRPL19-201ENST00000358788 693 ntTSL 5 BASIC13.14□□□□□ -0.31
LRFN1Q9P244 BEX2-201ENST00000372674 668 ntAPPRIS P1 TSL 2 BASIC13.14□□□□□ -0.31
LRFN1Q9P244 DEFB123-201ENST00000376309 467 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
LRFN1Q9P244 ARL16-201ENST00000397498 1227 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
LRFN1Q9P244 UBE2I-206ENST00000403747 1217 ntAPPRIS P1 TSL 5 BASIC13.14□□□□□ -0.31
LRFN1Q9P244 TMEM219-202ENST00000414689 1024 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
LRFN1Q9P244 AC073869.2-201ENST00000417338 1026 ntBASIC13.14□□□□□ -0.31
LRFN1Q9P244 AC098935.1-201ENST00000446057 611 ntBASIC13.14□□□□□ -0.31
Retrieved 100 of 98,524 protein–RNA pairs in 65.8 ms