Protein–RNA interactions for Protein: P55285

CDH6, Cadherin-6, humanhuman

Predictions only

Length 790 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH6P55285 AC072061.1-201ENST00000569710 2234 ntBASIC14.91□□□□□ -0.02
CDH6P55285 MSR1-201ENST00000262101 2132 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
CDH6P55285 HNRNPH1-201ENST00000329433 2114 ntTSL 2 BASIC14.91□□□□□ -0.02
CDH6P55285 ZFAND2B-203ENST00000409206 1159 ntTSL 2 BASIC14.91□□□□□ -0.02
CDH6P55285 AL645941.1-201ENST00000415875 338 ntTSL 3 BASIC14.91□□□□□ -0.02
CDH6P55285 AL365277.1-206ENST00000417869 487 ntTSL 3 BASIC14.91□□□□□ -0.02
CDH6P55285 RPS2P32-201ENST00000439199 892 ntBASIC14.91□□□□□ -0.02
CDH6P55285 VDAC1P1-201ENST00000439229 848 ntBASIC14.91□□□□□ -0.02
CDH6P55285 OR2R1P-201ENST00000441404 914 ntBASIC14.91□□□□□ -0.02
CDH6P55285 AL365277.1-204ENST00000450157 599 ntTSL 3 BASIC14.91□□□□□ -0.02
CDH6P55285 AL365277.1-203ENST00000458207 693 ntTSL 3 BASIC14.91□□□□□ -0.02
CDH6P55285 ASF1B-202ENST00000474890 765 ntTSL 2 BASIC14.91□□□□□ -0.02
CDH6P55285 AC009487.3-201ENST00000505579 560 ntTSL 4 BASIC14.91□□□□□ -0.02
CDH6P55285 AC106772.2-201ENST00000515085 442 ntTSL 3 BASIC14.91□□□□□ -0.02
CDH6P55285 NDRG1-209ENST00000518176 888 ntTSL 2 BASIC14.91□□□□□ -0.02
CDH6P55285 AP003385.5-201ENST00000533876 555 ntTSL 4 BASIC14.91□□□□□ -0.02
CDH6P55285 AL583722.2-201ENST00000557223 663 ntTSL 3 BASIC14.91□□□□□ -0.02
CDH6P55285 AC140658.4-201ENST00000561990 352 ntBASIC14.91□□□□□ -0.02
CDH6P55285 C15orf40-211ENST00000565712 559 ntTSL 3 BASIC14.91□□□□□ -0.02
CDH6P55285 AP005329.1-201ENST00000578800 1035 ntTSL 2 BASIC14.91□□□□□ -0.02
CDH6P55285 AC005324.6-201ENST00000587972 613 ntBASIC14.91□□□□□ -0.02
CDH6P55285 KLK3-211ENST00000597483 810 ntTSL 2 BASIC14.91□□□□□ -0.02
CDH6P55285 AL023803.2-201ENST00000620080 638 ntBASIC14.91□□□□□ -0.02
CDH6P55285 DDX5-235ENST00000630471 473 ntTSL 4 BASIC14.91□□□□□ -0.02
CDH6P55285 PCBP2-OT1-201ENST00000634357 590 ntBASIC14.91□□□□□ -0.02
CDH6P55285 AC004706.3-207ENST00000634823 977 ntTSL 5 BASIC14.91□□□□□ -0.02
CDH6P55285 IER3IP1-202ENST00000639845 832 ntTSL 2 BASIC14.91□□□□□ -0.02
CDH6P55285 PRRT2-202ENST00000358758 2567 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
CDH6P55285 KBTBD7-201ENST00000379483 4734 ntAPPRIS P1 BASIC14.91□□□□□ -0.02
CDH6P55285 ELN-210ENST00000380584 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
CDH6P55285 GGT5-202ENST00000327365 2494 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
CDH6P55285 PAX3-203ENST00000344493 3109 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
CDH6P55285 AC018629.1-201ENST00000623381 1736 ntBASIC14.91□□□□□ -0.02
CDH6P55285 MEFV-201ENST00000219596 3499 ntAPPRIS P2 TSL 1 (best) BASIC14.91□□□□□ -0.02
CDH6P55285 SLC38A5-213ENST00000620913 1993 ntAPPRIS P1 TSL 5 BASIC14.91□□□□□ -0.02
CDH6P55285 ASH2L-201ENST00000343823 3090 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
CDH6P55285 MAD1L1-204ENST00000406869 2991 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
CDH6P55285 POLM-202ENST00000335195 2444 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
CDH6P55285 AHCYP4-201ENST00000419201 1315 ntBASIC14.91□□□□□ -0.02
CDH6P55285 MMAB-210ENST00000545712 4438 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
CDH6P55285 SELENON-201ENST00000354177 4227 ntAPPRIS ALT2 TSL 5 BASIC14.9□□□□□ -0.02
CDH6P55285 CCND3-201ENST00000372987 2233 ntTSL 2 BASIC14.9□□□□□ -0.02
CDH6P55285 AP1B1-208ENST00000432560 4146 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
CDH6P55285 RBM26-203ENST00000438737 4132 ntTSL 5 BASIC14.9□□□□□ -0.02
CDH6P55285 WNT7A-201ENST00000285018 4041 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
CDH6P55285 RRAGD-201ENST00000359203 4042 ntTSL 2 BASIC14.9□□□□□ -0.02
CDH6P55285 ATN1-201ENST00000356654 4351 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
CDH6P55285 CASC10-201ENST00000377113 3801 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
CDH6P55285 SLC4A7-213ENST00000454389 4159 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
CDH6P55285 ATP6V1H-201ENST00000355221 2365 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
CDH6P55285 GRSF1-201ENST00000254799 6666 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
CDH6P55285 TUNAR-201ENST00000503525 3197 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
CDH6P55285 MYADM-202ENST00000391768 1492 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
CDH6P55285 MTA1-202ENST00000405646 2709 ntAPPRIS ALT2 TSL 5 BASIC14.9□□□□□ -0.02
CDH6P55285 AC013460.1-202ENST00000435062 2253 ntTSL 2 BASIC14.9□□□□□ -0.02
CDH6P55285 SFXN3-201ENST00000224807 3089 ntTSL 5 BASIC14.9□□□□□ -0.02
CDH6P55285 THUMPD3-AS1-212ENST00000520447 1809 ntTSL 5 BASIC14.9□□□□□ -0.02
CDH6P55285 PLXNC1-202ENST00000545312 1813 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
CDH6P55285 CROT-203ENST00000419147 2959 ntTSL 2 BASIC14.9□□□□□ -0.02
CDH6P55285 SMARCA4-204ENST00000444061 4938 ntAPPRIS ALT1 TSL 5 BASIC14.9□□□□□ -0.02
CDH6P55285 MN1-201ENST00000302326 7556 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
CDH6P55285 SPIN3-245ENST00000640768 1722 ntTSL 5 BASIC14.9□□□□□ -0.02
CDH6P55285 KLK1-201ENST00000301420 866 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
CDH6P55285 TREM2-203ENST00000373122 1012 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
CDH6P55285 GTF2A2-204ENST00000396063 970 ntAPPRIS P1 TSL 2 BASIC14.9□□□□□ -0.02
CDH6P55285 GTF2A2-205ENST00000396064 633 ntTSL 3 BASIC14.9□□□□□ -0.02
CDH6P55285 GTF2A2-208ENST00000484743 408 ntTSL 2 BASIC14.9□□□□□ -0.02
CDH6P55285 AP001007.1-201ENST00000526796 645 ntTSL 2 BASIC14.9□□□□□ -0.02
CDH6P55285 ADIG-204ENST00000537425 770 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
CDH6P55285 PPP1R32-205ENST00000538185 1107 ntTSL 2 BASIC14.9□□□□□ -0.02
CDH6P55285 AP000438.1-201ENST00000543624 749 ntTSL 3 BASIC14.9□□□□□ -0.02
CDH6P55285 AL512310.5-201ENST00000551999 515 ntBASIC14.9□□□□□ -0.02
CDH6P55285 PAM16-211ENST00000575848 518 ntTSL 3 BASIC14.9□□□□□ -0.02
CDH6P55285 PAM16-214ENST00000576217 493 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
CDH6P55285 AC003070.2-201ENST00000589730 386 ntTSL 3 BASIC14.9□□□□□ -0.02
CDH6P55285 AC092299.1-201ENST00000632679 757 ntBASIC14.9□□□□□ -0.02
CDH6P55285 CCDC180-210ENST00000529487 5242 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
CDH6P55285 KLHL13-207ENST00000540167 3396 ntTSL 2 BASIC14.9□□□□□ -0.02
CDH6P55285 NAP1L2-201ENST00000373517 2550 ntAPPRIS P1 BASIC14.9□□□□□ -0.02
CDH6P55285 SGCE-202ENST00000415788 1871 ntTSL 2 BASIC14.9□□□□□ -0.02
CDH6P55285 TUBA3D-201ENST00000321253 1546 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
CDH6P55285 DESI2-202ENST00000302550 4208 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
CDH6P55285 PEG13-201ENST00000631594 5667 ntBASIC14.9□□□□□ -0.02
CDH6P55285 HELLS-202ENST00000348459 3099 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
CDH6P55285 PPM1M-203ENST00000409502 1790 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
CDH6P55285 ST6GAL1-201ENST00000169298 4645 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
CDH6P55285 S100PBP-203ENST00000373476 3320 ntAPPRIS P1 TSL 2 BASIC14.9□□□□□ -0.02
CDH6P55285 ANKMY1-208ENST00000405002 3304 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
CDH6P55285 PARP3-203ENST00000431474 2360 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
CDH6P55285 MTCL1-202ENST00000359865 6093 ntAPPRIS P2 TSL 2 BASIC14.9□□□□□ -0.02
CDH6P55285 SMOC2-202ENST00000356284 3117 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
CDH6P55285 CFAP52-202ENST00000396219 1912 ntTSL 2 BASIC14.9□□□□□ -0.02
CDH6P55285 KIF6-201ENST00000229913 1330 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
CDH6P55285 ECSIT-209ENST00000591104 1319 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
CDH6P55285 PCM1-201ENST00000325083 6820 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
CDH6P55285 PGAP2-201ENST00000278243 2062 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
CDH6P55285 C9orf3-202ENST00000297979 2820 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
CDH6P55285 ZCCHC7-209ENST00000534928 2828 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
CDH6P55285 AC004899.1-201ENST00000424687 1714 ntBASIC14.89□□□□□ -0.03
CDH6P55285 OR2A25-202ENST00000641441 1733 ntAPPRIS P1 BASIC14.89□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 61.4 ms