Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 AC009118.2-201ENST00000613275 655 ntBASIC12.67□□□□□ -0.38
SOX2P48431 BAP1-211ENST00000615113 489 ntBASIC12.67□□□□□ -0.38
SOX2P48431 Z83844.1-201ENST00000455236 4904 ntAPPRIS P1 TSL 5 BASIC12.67□□□□□ -0.38
SOX2P48431 HARS-202ENST00000415192 1401 ntTSL 2 BASIC12.67□□□□□ -0.38
SOX2P48431 BORCS8-202ENST00000462790 1429 ntAPPRIS P3 TSL 1 (best) BASIC12.67□□□□□ -0.38
SOX2P48431 AHCY-205ENST00000538132 2366 ntTSL 2 BASIC12.67□□□□□ -0.38
SOX2P48431 MYO16-205ENST00000457511 7436 ntAPPRIS ALT2 TSL 1 (best) BASIC12.67□□□□□ -0.38
SOX2P48431 CACNA1G-229ENST00000514181 6795 ntAPPRIS ALT2 TSL 1 (best) BASIC12.67□□□□□ -0.38
SOX2P48431 APOF-201ENST00000398189 1715 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
SOX2P48431 PAX7-202ENST00000400661 1700 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
SOX2P48431 GATC-203ENST00000551765 4244 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
SOX2P48431 CPPED1-201ENST00000261660 1898 ntTSL 2 BASIC12.67□□□□□ -0.38
SOX2P48431 C8orf31-201ENST00000395172 1875 ntTSL 2 BASIC12.67□□□□□ -0.38
SOX2P48431 AC082651.4-201ENST00000483023 1852 ntTSL 5 BASIC12.67□□□□□ -0.38
SOX2P48431 CEACAM20-204ENST00000617951 2034 ntAPPRIS ALT2 TSL 5 BASIC12.67□□□□□ -0.38
SOX2P48431 TAS1R3-201ENST00000339381 3433 ntAPPRIS P1 TSL 2 BASIC12.67□□□□□ -0.38
SOX2P48431 PIK3R1-213ENST00000521657 3891 ntAPPRIS P1 TSL 5 BASIC12.67□□□□□ -0.38
SOX2P48431 RGS9-210ENST00000635833 2308 ntAPPRIS ALT2 TSL 5 BASIC12.67□□□□□ -0.38
SOX2P48431 MAGED4B-211ENST00000497164 2482 ntAPPRIS P3 TSL 1 (best) BASIC12.67□□□□□ -0.38
SOX2P48431 MADD-203ENST00000349238 5873 ntAPPRIS ALT2 TSL 1 (best) BASIC12.67□□□□□ -0.38
SOX2P48431 GTPBP4-202ENST00000360803 5075 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
SOX2P48431 YWHAZ-206ENST00000395957 5248 ntAPPRIS P1 TSL 5 BASIC12.67□□□□□ -0.38
SOX2P48431 AMER1-202ENST00000374869 3688 ntTSL 5 BASIC12.67□□□□□ -0.38
SOX2P48431 MORC4-202ENST00000355610 3834 ntAPPRIS P3 TSL 1 (best) BASIC12.67□□□□□ -0.38
SOX2P48431 DDC-202ENST00000380984 1366 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
SOX2P48431 PGA5-201ENST00000312403 1519 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
SOX2P48431 SVOPL-202ENST00000419765 1523 ntAPPRIS P1 TSL 5 BASIC12.67□□□□□ -0.38
SOX2P48431 TP73-201ENST00000346387 4854 ntTSL 5 BASIC12.67□□□□□ -0.38
SOX2P48431 TXLNA-201ENST00000373609 5012 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
SOX2P48431 AC135782.3-201ENST00000562782 2105 ntBASIC12.67□□□□□ -0.38
SOX2P48431 LRP8-203ENST00000354412 2553 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
SOX2P48431 GLB1L-201ENST00000295759 2745 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
SOX2P48431 MICAL1-202ENST00000358807 3645 ntAPPRIS P3 TSL 1 (best) BASIC12.67□□□□□ -0.38
SOX2P48431 GPRASP1-202ENST00000415986 5877 ntAPPRIS P1 TSL 4 BASIC12.67□□□□□ -0.38
SOX2P48431 SPTBN2-204ENST00000529997 8085 ntTSL 5 BASIC12.66□□□□□ -0.38
SOX2P48431 PTPRH-202ENST00000376350 3877 ntAPPRIS P3 TSL 1 (best) BASIC12.66□□□□□ -0.38
SOX2P48431 MARK4-201ENST00000262891 3573 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
SOX2P48431 CACNA1C-231ENST00000616390 2833 ntTSL 2 BASIC12.66□□□□□ -0.38
SOX2P48431 NFE2L1-218ENST00000583378 2051 ntTSL 5 BASIC12.66□□□□□ -0.38
SOX2P48431 SRPX-205ENST00000538295 1780 ntAPPRIS ALT2 TSL 2 BASIC12.66□□□□□ -0.38
SOX2P48431 CCNE1-202ENST00000357943 1641 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
SOX2P48431 RBP3-201ENST00000584701 4276 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
SOX2P48431 TLL2-201ENST00000357947 6756 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
SOX2P48431 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC12.66□□□□□ -0.38
SOX2P48431 TRAK1-210ENST00000613405 4672 ntTSL 2 BASIC12.66□□□□□ -0.38
SOX2P48431 FAM219A-207ENST00000379089 3624 ntAPPRIS ALT1 TSL 3 BASIC12.66□□□□□ -0.38
SOX2P48431 ZSCAN16-AS1-201ENST00000600652 2163 ntTSL 2 BASIC12.66□□□□□ -0.38
SOX2P48431 ABI2-202ENST00000261017 6484 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
SOX2P48431 ZNF792-201ENST00000404801 3888 ntAPPRIS P1 TSL 2 BASIC12.66□□□□□ -0.38
SOX2P48431 SLC12A6-206ENST00000558589 3866 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
SOX2P48431 CYP1A1-203ENST00000395049 1594 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
SOX2P48431 CCDC51-201ENST00000395694 1560 ntAPPRIS P1 TSL 2 BASIC12.66□□□□□ -0.38
SOX2P48431 PCDHB5-201ENST00000231134 3408 ntAPPRIS P1 BASIC12.66□□□□□ -0.38
SOX2P48431 DPP8-202ENST00000321147 3125 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
SOX2P48431 CASC4-201ENST00000299957 3962 ntAPPRIS P4 TSL 1 (best) BASIC12.66□□□□□ -0.38
SOX2P48431 EEF1B2-201ENST00000236957 844 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
SOX2P48431 MIOX-203ENST00000395733 1021 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
SOX2P48431 CYB5R3-203ENST00000402438 1050 ntTSL 5 BASIC12.66□□□□□ -0.38
SOX2P48431 RN7SKP175-201ENST00000408472 289 ntBASIC12.66□□□□□ -0.38
SOX2P48431 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC12.66□□□□□ -0.38
SOX2P48431 AC087499.6-201ENST00000411576 835 ntBASIC12.66□□□□□ -0.38
SOX2P48431 SPTLC1P1-201ENST00000447199 261 ntBASIC12.66□□□□□ -0.38
SOX2P48431 DSN1-207ENST00000448110 2129 ntAPPRIS ALT2 TSL 2 BASIC12.66□□□□□ -0.38
SOX2P48431 RASA3-IT1-201ENST00000454005 380 ntTSL 3 BASIC12.66□□□□□ -0.38
SOX2P48431 UGT1A2P-201ENST00000454886 866 ntBASIC12.66□□□□□ -0.38
SOX2P48431 SEPT7P9-202ENST00000489259 743 ntTSL 3 BASIC12.66□□□□□ -0.38
SOX2P48431 ALG3P1-201ENST00000508806 1114 ntBASIC12.66□□□□□ -0.38
SOX2P48431 AP001107.3-201ENST00000534065 544 ntTSL 4 BASIC12.66□□□□□ -0.38
SOX2P48431 AC138304.1-201ENST00000563841 424 ntTSL 3 BASIC12.66□□□□□ -0.38
SOX2P48431 AC024941.2-201ENST00000625763 493 ntTSL 2 BASIC12.66□□□□□ -0.38
SOX2P48431 AC044839.1-204ENST00000634777 1058 ntTSL 5 BASIC12.66□□□□□ -0.38
SOX2P48431 DYNC1I1-202ENST00000359388 2843 ntAPPRIS ALT1 TSL 1 (best) BASIC12.66□□□□□ -0.38
SOX2P48431 ACTN1-205ENST00000538545 2813 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
SOX2P48431 KAZN-205ENST00000400798 3643 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
SOX2P48431 AC073869.1-201ENST00000415574 2762 ntBASIC12.66□□□□□ -0.38
SOX2P48431 GK-204ENST00000378945 2063 ntAPPRIS P3 TSL 1 (best) BASIC12.66□□□□□ -0.38
SOX2P48431 TBC1D3E-201ENST00000621587 2076 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
SOX2P48431 HDAC7-209ENST00000427332 3016 ntAPPRIS ALT2 TSL 5 BASIC12.66□□□□□ -0.38
SOX2P48431 TCL1A-203ENST00000554012 1391 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
SOX2P48431 TGM2-201ENST00000361475 5070 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
SOX2P48431 THEMIS2-201ENST00000328928 2337 ntTSL 2 BASIC12.66□□□□□ -0.38
SOX2P48431 CCDC126-202ENST00000409765 2324 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
SOX2P48431 ZNF75A-205ENST00000574298 2347 ntAPPRIS P1 TSL 2 BASIC12.66□□□□□ -0.38
SOX2P48431 ABLIM2-213ENST00000514025 2974 ntTSL 2 BASIC12.66□□□□□ -0.38
SOX2P48431 TRABD2B-202ENST00000606738 7034 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
SOX2P48431 NR3C2-209ENST00000625323 5909 ntTSL 5 BASIC12.66□□□□□ -0.38
SOX2P48431 URGCP-207ENST00000453200 4042 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
SOX2P48431 FGFR1OP-201ENST00000349556 1484 ntAPPRIS ALT2 TSL 1 (best) BASIC12.65□□□□□ -0.38
SOX2P48431 OR2I1P-208ENST00000641137 4948 ntBASIC12.65□□□□□ -0.38
SOX2P48431 CAMKV-201ENST00000296471 2913 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
SOX2P48431 AC073957.3-201ENST00000609998 6758 ntBASIC12.65□□□□□ -0.38
SOX2P48431 SIGLEC6-201ENST00000343300 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC12.65□□□□□ -0.38
SOX2P48431 ENO3-206ENST00000519584 1322 ntTSL 2 BASIC12.65□□□□□ -0.38
SOX2P48431 LIMD1-202ENST00000440097 2773 ntTSL 5 BASIC12.65□□□□□ -0.38
SOX2P48431 CNTNAP1-201ENST00000264638 5276 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
SOX2P48431 CCDC142-202ENST00000393965 3406 ntAPPRIS ALT2 TSL 1 (best) BASIC12.65□□□□□ -0.38
SOX2P48431 NDRG4-255ENST00000570248 3207 ntAPPRIS P2 TSL 1 (best) BASIC12.65□□□□□ -0.38
SOX2P48431 NTSR1-201ENST00000370501 4132 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
SOX2P48431 SMYD4-201ENST00000305513 4384 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
SOX2P48431 ENDOV-207ENST00000518907 2418 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
Retrieved 100 of 98,524 protein–RNA pairs in 44.5 ms