Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 SLC46A3-201ENST00000266943 3173 ntAPPRIS P3 TSL 1 (best) BASIC16■□□□□ 0.15
CIITAP33076 ADAMTS2-201ENST00000251582 6754 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
CIITAP33076 PLA2G16-201ENST00000323646 2594 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
CIITAP33076 MEIKIN-205ENST00000616644 1438 ntAPPRIS ALT2 TSL 5 BASIC16■□□□□ 0.15
CIITAP33076 GPR153-201ENST00000377893 4082 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
CIITAP33076 TMBIM6-203ENST00000423828 3254 ntAPPRIS ALT2 TSL 2 BASIC16■□□□□ 0.15
CIITAP33076 HERPUD1-203ENST00000379792 1782 ntTSL 5 BASIC16■□□□□ 0.15
CIITAP33076 SYBU-208ENST00000440310 3072 ntAPPRIS ALT2 TSL 5 BASIC16■□□□□ 0.15
CIITAP33076 MOCS1-205ENST00000373195 2852 ntTSL 2 BASIC16■□□□□ 0.15
CIITAP33076 CHRNA1-204ENST00000409323 1585 ntTSL 1 (best) BASIC16■□□□□ 0.15
CIITAP33076 SLC4A9-203ENST00000506545 2838 ntTSL 1 (best) BASIC16■□□□□ 0.15
CIITAP33076 MIRLET7BHG-203ENST00000435439 2264 ntTSL 2 BASIC15.99■□□□□ 0.15
CIITAP33076 AC010096.1-201ENST00000443897 1709 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
CIITAP33076 ZNF800-201ENST00000265827 4203 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
CIITAP33076 AL928921.2-201ENST00000641325 2442 ntBASIC15.99■□□□□ 0.15
CIITAP33076 NMNAT3-202ENST00000339837 1863 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
CIITAP33076 MROH1-209ENST00000534366 5092 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
CIITAP33076 GP6-202ENST00000333884 2210 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
CIITAP33076 WDR77-201ENST00000235090 2576 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
CIITAP33076 IQCE-203ENST00000402050 6844 ntAPPRIS P3 TSL 1 (best) BASIC15.99■□□□□ 0.15
CIITAP33076 CAMKK2-201ENST00000324774 5598 ntAPPRIS P4 TSL 1 (best) BASIC15.99■□□□□ 0.15
CIITAP33076 MLXIPL-203ENST00000354613 3215 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
CIITAP33076 LIPA-205ENST00000456827 2527 ntTSL 3 BASIC15.99■□□□□ 0.15
CIITAP33076 OPN5-202ENST00000371211 1801 ntAPPRIS P2 TSL 1 (best) BASIC15.99■□□□□ 0.15
CIITAP33076 TMUB2-211ENST00000589184 1837 ntTSL 5 BASIC15.99■□□□□ 0.15
CIITAP33076 LINC01230-201ENST00000625222 3017 ntBASIC15.99■□□□□ 0.15
CIITAP33076 TAGLN2-203ENST00000368097 1604 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
CIITAP33076 CAMSAP1-203ENST00000409386 5730 ntAPPRIS ALT2 TSL 5 BASIC15.99■□□□□ 0.15
CIITAP33076 XPNPEP1-201ENST00000322238 2467 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
CIITAP33076 CST5-201ENST00000304710 756 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
CIITAP33076 EIF3F-201ENST00000309828 1254 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
CIITAP33076 AC091046.1-201ENST00000331871 207 ntBASIC15.99■□□□□ 0.15
CIITAP33076 DCAF7-201ENST00000415273 1220 ntTSL 2 BASIC15.99■□□□□ 0.15
CIITAP33076 Metazoa_SRP.9-201ENST00000415635 283 ntBASIC15.99■□□□□ 0.15
CIITAP33076 TMEM243-202ENST00000423734 601 ntTSL 2 BASIC15.99■□□□□ 0.15
CIITAP33076 DNAJB1P1-201ENST00000429417 1024 ntBASIC15.99■□□□□ 0.15
CIITAP33076 SHMT2-203ENST00000449049 2121 ntTSL 2 BASIC15.99■□□□□ 0.15
CIITAP33076 MYLK-AS1-202ENST00000470449 760 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
CIITAP33076 AC093904.2-201ENST00000495580 418 ntTSL 3 BASIC15.99■□□□□ 0.15
CIITAP33076 TMEM218-205ENST00000527271 706 ntAPPRIS P1 TSL 2 BASIC15.99■□□□□ 0.15
CIITAP33076 EIF2B1-205ENST00000539951 848 ntTSL 5 BASIC15.99■□□□□ 0.15
CIITAP33076 AC079174.1-201ENST00000552486 312 ntTSL 3 BASIC15.99■□□□□ 0.15
CIITAP33076 AC079328.1-201ENST00000560358 952 ntBASIC15.99■□□□□ 0.15
CIITAP33076 AC009163.3-201ENST00000563554 852 ntTSL 3 BASIC15.99■□□□□ 0.15
CIITAP33076 AC005632.3-201ENST00000605544 308 ntBASIC15.99■□□□□ 0.15
CIITAP33076 SIRT2-219ENST00000613542 1170 ntTSL 5 BASIC15.99■□□□□ 0.15
CIITAP33076 P4HA1-205ENST00000440381 2790 ntTSL 3 BASIC15.99■□□□□ 0.15
CIITAP33076 PSMD9-207ENST00000541212 2784 ntAPPRIS P2 TSL 1 (best) BASIC15.99■□□□□ 0.15
CIITAP33076 MYH11-211ENST00000576790 6272 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
CIITAP33076 TRMT2B-201ENST00000372935 2921 ntAPPRIS P3 TSL 1 (best) BASIC15.99■□□□□ 0.15
CIITAP33076 PODN-207ENST00000618387 3065 ntAPPRIS ALT2 TSL 2 BASIC15.99■□□□□ 0.15
CIITAP33076 DEGS2-201ENST00000305631 4352 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
CIITAP33076 YPEL4-201ENST00000300022 1721 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
CIITAP33076 FOXF1-201ENST00000262426 3516 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
CIITAP33076 HS1BP3-201ENST00000304031 2370 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
CIITAP33076 RALGAPA1-203ENST00000389698 7864 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
CIITAP33076 PWWP2A-201ENST00000307063 3346 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
CIITAP33076 METTL7B-202ENST00000614691 1368 ntTSL 5 BASIC15.99■□□□□ 0.15
CIITAP33076 FAM84A-201ENST00000295092 6355 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
CIITAP33076 AC003986.1-201ENST00000452700 1526 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
CIITAP33076 GPAT3-201ENST00000264409 2625 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
CIITAP33076 IL1RN-201ENST00000259206 1810 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
CIITAP33076 LINC00667-206ENST00000582363 2935 ntTSL 2 BASIC15.98■□□□□ 0.15
CIITAP33076 AC245100.1-201ENST00000452996 1331 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
CIITAP33076 TSPAN18-207ENST00000520358 3316 ntAPPRIS P1 TSL 5 BASIC15.98■□□□□ 0.15
CIITAP33076 CASP8-202ENST00000264275 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
CIITAP33076 ELN-203ENST00000320492 2991 ntAPPRIS ALT2 TSL 2 BASIC15.98■□□□□ 0.15
CIITAP33076 ADAT1-201ENST00000307921 1869 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
CIITAP33076 MT1H-201ENST00000332374 397 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
CIITAP33076 ANO10-202ENST00000350459 2039 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
CIITAP33076 UBA1-202ENST00000377269 2497 ntTSL 2 BASIC15.98■□□□□ 0.15
CIITAP33076 TARBP2-202ENST00000394357 1402 ntTSL 3 BASIC15.98■□□□□ 0.15
CIITAP33076 ANKDD1A-203ENST00000395723 1250 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
CIITAP33076 GAPDH-203ENST00000396858 1292 ntTSL 5 BASIC15.98■□□□□ 0.15
CIITAP33076 PTTG1IP-202ENST00000397886 755 ntTSL 4 BASIC15.98■□□□□ 0.15
CIITAP33076 AL451042.2-201ENST00000424774 904 ntTSL 2 BASIC15.98■□□□□ 0.15
CIITAP33076 AC098934.1-203ENST00000442868 1262 ntBASIC15.98■□□□□ 0.15
CIITAP33076 CTSS-202ENST00000448301 1421 ntTSL 2 BASIC15.98■□□□□ 0.15
CIITAP33076 AC011247.2-201ENST00000457097 233 ntTSL 4 BASIC15.98■□□□□ 0.15
CIITAP33076 PGAP2-212ENST00000464906 1259 ntTSL 2 BASIC15.98■□□□□ 0.15
CIITAP33076 DDX41-208ENST00000507955 2607 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
CIITAP33076 AC095040.1-201ENST00000513286 675 ntBASIC15.98■□□□□ 0.15
CIITAP33076 SERGEF-208ENST00000528200 1264 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
CIITAP33076 KLF17P1-201ENST00000547105 1126 ntBASIC15.98■□□□□ 0.15
CIITAP33076 CCNB2-203ENST00000559622 1064 ntTSL 5 BASIC15.98■□□□□ 0.15
CIITAP33076 AC135782.2-201ENST00000562040 472 ntTSL 3 BASIC15.98■□□□□ 0.15
CIITAP33076 AC009093.8-202ENST00000562902 677 ntTSL 2 BASIC15.98■□□□□ 0.15
CIITAP33076 AC243964.2-201ENST00000590796 829 ntTSL 5 BASIC15.98■□□□□ 0.15
CIITAP33076 PGPEP1-203ENST00000595066 762 ntTSL 2 BASIC15.98■□□□□ 0.15
CIITAP33076 AC128714.1-201ENST00000637035 887 ntBASIC15.98■□□□□ 0.15
CIITAP33076 SPATA6-204ENST00000396199 4964 ntTSL 2 BASIC15.98■□□□□ 0.15
CIITAP33076 CSRP1-202ENST00000367306 2129 ntAPPRIS P1 TSL 5 BASIC15.98■□□□□ 0.15
CIITAP33076 APPL1-201ENST00000288266 6058 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
CIITAP33076 SS18-201ENST00000269137 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC15.98■□□□□ 0.15
CIITAP33076 MLXIPL-201ENST00000313375 3278 ntAPPRIS P3 TSL 1 (best) BASIC15.98■□□□□ 0.15
CIITAP33076 MLXIPL-206ENST00000434326 3252 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
CIITAP33076 ATXN10-202ENST00000381061 3135 ntTSL 2 BASIC15.98■□□□□ 0.15
CIITAP33076 AL589669.1-201ENST00000639829 1506 ntTSL 5 BASIC15.98■□□□□ 0.15
CIITAP33076 ANXA8L1-202ENST00000611655 1398 ntTSL 2 BASIC15.98■□□□□ 0.15
CIITAP33076 NCBP2-204ENST00000427641 1946 ntTSL 2 BASIC15.98■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 34.8 ms