Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 ANO10-202ENST00000350459 2039 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
HMGB1P09429 RAPGEF1-201ENST00000372189 6085 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
HMGB1P09429 RMDN3-201ENST00000260385 3138 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
HMGB1P09429 HNRNPH1-201ENST00000329433 2114 ntTSL 2 BASIC16.85■□□□□ 0.29
HMGB1P09429 RSPO3-201ENST00000356698 2697 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
HMGB1P09429 CLASP2-204ENST00000399362 7282 ntAPPRIS ALT2 TSL 5 BASIC16.85■□□□□ 0.29
HMGB1P09429 TLL1-201ENST00000061240 6708 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
HMGB1P09429 AC013460.1-202ENST00000435062 2253 ntTSL 2 BASIC16.85■□□□□ 0.29
HMGB1P09429 CDH20-202ENST00000536675 2855 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
HMGB1P09429 ZNF516-201ENST00000443185 8118 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
HMGB1P09429 THBD-201ENST00000377103 4109 ntAPPRIS P1 BASIC16.85■□□□□ 0.29
HMGB1P09429 TMBIM4-202ENST00000358230 2952 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
HMGB1P09429 LINC01114-203ENST00000425879 2434 ntTSL 2 BASIC16.85■□□□□ 0.29
HMGB1P09429 LLGL1-201ENST00000316843 4260 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
HMGB1P09429 NRDC-201ENST00000352171 3691 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
HMGB1P09429 ANO6-202ENST00000423947 5504 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
HMGB1P09429 NOX5-203ENST00000448182 2498 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
HMGB1P09429 H6PD-203ENST00000602477 5590 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
HMGB1P09429 CTBP1-AS2-206ENST00000581398 5652 ntBASIC16.85■□□□□ 0.29
HMGB1P09429 MRPL32-201ENST00000223324 1035 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
HMGB1P09429 AC245369.1-201ENST00000390634 434 ntAPPRIS P1 BASIC16.85■□□□□ 0.29
HMGB1P09429 OSM-202ENST00000403389 1000 ntAPPRIS ALT2 TSL 3 BASIC16.85■□□□□ 0.29
HMGB1P09429 MIR1908-201ENST00000410394 80 ntBASIC16.85■□□□□ 0.29
HMGB1P09429 KLK11-204ENST00000453757 1174 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
HMGB1P09429 FAM162A-202ENST00000469967 1015 ntTSL 2 BASIC16.85■□□□□ 0.29
HMGB1P09429 DSCR3-207ENST00000476950 937 ntTSL 2 BASIC16.85■□□□□ 0.29
HMGB1P09429 ANO1-AS1-201ENST00000524987 646 ntTSL 3 BASIC16.85■□□□□ 0.29
HMGB1P09429 AC105020.3-201ENST00000566036 560 ntTSL 4 BASIC16.85■□□□□ 0.29
HMGB1P09429 MIR6752-201ENST00000618442 71 ntBASIC16.85■□□□□ 0.29
HMGB1P09429 ZBTB17-202ENST00000375743 2745 ntAPPRIS P3 TSL 1 (best) BASIC16.85■□□□□ 0.29
HMGB1P09429 AP3M2-201ENST00000174653 3661 ntAPPRIS P1 TSL 5 BASIC16.85■□□□□ 0.29
HMGB1P09429 HIPK3-203ENST00000456517 7399 ntAPPRIS P1 TSL 2 BASIC16.85■□□□□ 0.29
HMGB1P09429 VWF-201ENST00000261405 8838 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
HMGB1P09429 POLM-202ENST00000335195 2444 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
HMGB1P09429 MAPRE2-201ENST00000300249 4265 ntAPPRIS P3 TSL 1 (best) BASIC16.84■□□□□ 0.29
HMGB1P09429 NR1H3-221ENST00000481889 1704 ntTSL 5 BASIC16.84■□□□□ 0.29
HMGB1P09429 LETMD1-235ENST00000552739 1713 ntTSL 2 BASIC16.84■□□□□ 0.29
HMGB1P09429 ATP6V0A4-202ENST00000353492 2709 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
HMGB1P09429 RARS2-201ENST00000369536 1818 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
HMGB1P09429 TTLL4-212ENST00000457313 3723 ntTSL 2 BASIC16.84■□□□□ 0.29
HMGB1P09429 LDB3-207ENST00000542786 1889 ntTSL 2 BASIC16.84■□□□□ 0.29
HMGB1P09429 RBP1-203ENST00000483943 1935 ntTSL 2 BASIC16.84■□□□□ 0.29
HMGB1P09429 AL359075.1-201ENST00000476232 2921 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
HMGB1P09429 LINC00324-201ENST00000315707 2082 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
HMGB1P09429 ABCA7-203ENST00000435683 6211 ntAPPRIS ALT2 TSL 5 BASIC16.84■□□□□ 0.29
HMGB1P09429 GCKR-201ENST00000264717 2186 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
HMGB1P09429 MAP2K3-201ENST00000316920 1246 ntTSL 5 BASIC16.84■□□□□ 0.29
HMGB1P09429 SKA1-202ENST00000398452 979 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
HMGB1P09429 XG-202ENST00000419513 979 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
HMGB1P09429 EIF4HP1-201ENST00000453115 687 ntBASIC16.84■□□□□ 0.29
HMGB1P09429 AL122035.1-201ENST00000556640 550 ntTSL 2 BASIC16.84■□□□□ 0.29
HMGB1P09429 AC025259.3-202ENST00000564363 687 ntTSL 2 BASIC16.84■□□□□ 0.29
HMGB1P09429 MIR3615-201ENST00000581999 87 ntBASIC16.84■□□□□ 0.29
HMGB1P09429 AC079336.1-201ENST00000583156 420 ntTSL 3 BASIC16.84■□□□□ 0.29
HMGB1P09429 BCL2L12-204ENST00000594157 620 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
HMGB1P09429 BX537318.1-201ENST00000608290 1207 ntTSL 5 BASIC16.84■□□□□ 0.29
HMGB1P09429 FDPS-221ENST00000612683 1198 ntAPPRIS ALT1 TSL 5 BASIC16.84■□□□□ 0.29
HMGB1P09429 ITGA9-AS1-213ENST00000614028 913 ntTSL 5 BASIC16.84■□□□□ 0.29
HMGB1P09429 AC099795.1-202ENST00000640492 759 ntTSL 5 BASIC16.84■□□□□ 0.29
HMGB1P09429 GRN-222ENST00000639447 1314 ntTSL 2 BASIC16.84■□□□□ 0.29
HMGB1P09429 AC090515.2-201ENST00000500929 1396 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
HMGB1P09429 ENO3-202ENST00000518175 1448 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
HMGB1P09429 CHAT-212ENST00000640822 1412 ntTSL 5 BASIC16.84■□□□□ 0.29
HMGB1P09429 LIG1-202ENST00000427526 3027 ntAPPRIS ALT2 TSL 2 BASIC16.84■□□□□ 0.29
HMGB1P09429 PDHB-206ENST00000474765 1503 ntTSL 5 BASIC16.84■□□□□ 0.29
HMGB1P09429 IKBKB-217ENST00000520810 3086 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
HMGB1P09429 SLC9B2-202ENST00000394785 3126 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
HMGB1P09429 LINC00665-205ENST00000585356 1557 ntTSL 2 BASIC16.84■□□□□ 0.29
HMGB1P09429 RASGEF1B-202ENST00000335927 1756 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
HMGB1P09429 PTBP1-221ENST00000635647 3691 ntTSL 5 BASIC16.84■□□□□ 0.29
HMGB1P09429 DDN-201ENST00000421952 3749 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
HMGB1P09429 TERT-201ENST00000310581 4018 ntAPPRIS P3 TSL 1 (best) BASIC16.84■□□□□ 0.29
HMGB1P09429 FAM90A12P-201ENST00000519497 2375 ntBASIC16.84■□□□□ 0.29
HMGB1P09429 FAM90A24P-201ENST00000520792 2369 ntBASIC16.84■□□□□ 0.29
HMGB1P09429 CLCN4-201ENST00000380829 2418 ntTSL 5 BASIC16.84■□□□□ 0.29
HMGB1P09429 APBB1IP-202ENST00000376236 2771 ntAPPRIS P1 TSL 5 BASIC16.83■□□□□ 0.29
HMGB1P09429 NUTM2G-201ENST00000354649 2851 ntAPPRIS P3 TSL 5 BASIC16.83■□□□□ 0.29
HMGB1P09429 MAN2B2-202ENST00000504248 2968 ntTSL 2 BASIC16.83■□□□□ 0.29
HMGB1P09429 GPRC5B-209ENST00000569479 2984 ntAPPRIS P2 TSL 5 BASIC16.83■□□□□ 0.29
HMGB1P09429 CILP2-202ENST00000586018 4234 ntAPPRIS ALT1 TSL 2 BASIC16.83■□□□□ 0.29
HMGB1P09429 MKL1-202ENST00000396617 4505 ntTSL 1 (best) BASIC16.83■□□□□ 0.29
HMGB1P09429 KCP-206ENST00000613019 4853 ntAPPRIS P5 TSL 5 BASIC16.83■□□□□ 0.29
HMGB1P09429 LSM10-201ENST00000315732 850 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
HMGB1P09429 PSMG2-201ENST00000317615 1686 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
HMGB1P09429 WDSUB1-201ENST00000358147 1535 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
HMGB1P09429 Z82188.2-201ENST00000419128 630 ntTSL 5 BASIC16.83■□□□□ 0.28
HMGB1P09429 GLIS2-202ENST00000433375 3705 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
HMGB1P09429 AC003986.1-201ENST00000452700 1526 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
HMGB1P09429 MPZ-204ENST00000491222 1824 ntTSL 2 BASIC16.83■□□□□ 0.28
HMGB1P09429 RHEB-207ENST00000496004 744 ntTSL 2 BASIC16.83■□□□□ 0.28
HMGB1P09429 AC125604.1-201ENST00000496255 707 ntBASIC16.83■□□□□ 0.28
HMGB1P09429 RCC2P8-201ENST00000502779 1035 ntBASIC16.83■□□□□ 0.28
HMGB1P09429 AC132803.1-201ENST00000504204 493 ntTSL 2 BASIC16.83■□□□□ 0.28
HMGB1P09429 AC044849.1-201ENST00000519737 1188 ntBASIC16.83■□□□□ 0.28
HMGB1P09429 AC037486.1-201ENST00000523792 790 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
HMGB1P09429 AC148477.2-201ENST00000537762 3039 ntTSL 3 BASIC16.83■□□□□ 0.28
HMGB1P09429 METAP2-205ENST00000546753 1862 ntTSL 2 BASIC16.83■□□□□ 0.28
HMGB1P09429 NME1-NME2-203ENST00000555572 1193 ntAPPRIS ALT2 TSL 2 BASIC16.83■□□□□ 0.28
HMGB1P09429 DPF3-210ENST00000556509 1138 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
HMGB1P09429 GSTZ1-219ENST00000557639 873 ntTSL 2 BASIC16.83■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 25.9 ms