Protein–RNA interactions for Protein: O75445

USH2A, Usherin, humanhuman

Predictions only

Length 5,202 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH2AO75445 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC6.14□□□□□ -1.43
USH2AO75445 CXorf38-202ENST00000378421 2380 ntTSL 2 BASIC6.14□□□□□ -1.43
USH2AO75445 CACNA2D4-209ENST00000538450 1498 ntTSL 2 BASIC6.14□□□□□ -1.43
USH2AO75445 RGR-202ENST00000359452 2247 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
USH2AO75445 ELMO3-201ENST00000360833 2480 ntAPPRIS ALT2 TSL 2 BASIC6.14□□□□□ -1.43
USH2AO75445 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
USH2AO75445 KHK-201ENST00000260598 2397 ntAPPRIS P5 TSL 2 BASIC6.13□□□□□ -1.43
USH2AO75445 EDDM3B-201ENST00000326783 896 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
USH2AO75445 COA6-201ENST00000366612 1013 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
USH2AO75445 FATE1-201ENST00000370350 1072 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
USH2AO75445 TCEA3-201ENST00000374601 1197 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
USH2AO75445 PIGL-202ENST00000395844 1257 ntTSL 5 BASIC6.13□□□□□ -1.43
USH2AO75445 TMEM210-201ENST00000413619 873 ntAPPRIS P1 TSL 5 BASIC6.13□□□□□ -1.43
USH2AO75445 LINC00271-202ENST00000436554 655 ntTSL 5 BASIC6.13□□□□□ -1.43
USH2AO75445 VAMP2-203ENST00000481878 557 ntAPPRIS ALT1 TSL 2 BASIC6.13□□□□□ -1.43
USH2AO75445 NDUFB2P1-201ENST00000506966 295 ntBASIC6.13□□□□□ -1.43
USH2AO75445 SEMA6A-AS1-206ENST00000514214 782 ntTSL 3 BASIC6.13□□□□□ -1.43
USH2AO75445 AC044802.2-201ENST00000551187 434 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
USH2AO75445 AL136040.1-201ENST00000557775 601 ntTSL 3 BASIC6.13□□□□□ -1.43
USH2AO75445 DUSP22-206ENST00000603453 804 ntTSL 4 BASIC6.13□□□□□ -1.43
USH2AO75445 RN7SL238P-201ENST00000613832 290 ntBASIC6.13□□□□□ -1.43
USH2AO75445 Metazoa_SRP.139-201ENST00000616096 290 ntBASIC6.13□□□□□ -1.43
USH2AO75445 RN7SL106P-201ENST00000618104 290 ntBASIC6.13□□□□□ -1.43
USH2AO75445 CAPN5-202ENST00000456580 2805 ntTSL 2 BASIC6.13□□□□□ -1.43
USH2AO75445 APCDD1L-201ENST00000371149 3426 ntAPPRIS P2 TSL 1 (best) BASIC6.13□□□□□ -1.43
USH2AO75445 UVSSA-206ENST00000507531 2597 ntAPPRIS P2 TSL 1 (best) BASIC6.13□□□□□ -1.43
USH2AO75445 AFTPH-201ENST00000238855 4113 ntAPPRIS ALT1 TSL 5 BASIC6.13□□□□□ -1.43
USH2AO75445 POLR1C-203ENST00000372389 1355 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
USH2AO75445 PTK6-202ENST00000542869 2931 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
USH2AO75445 TARSL2-201ENST00000335968 3610 ntAPPRIS P2 TSL 1 (best) BASIC6.13□□□□□ -1.43
USH2AO75445 SMAD6-201ENST00000288840 3835 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
USH2AO75445 TRAP1-201ENST00000246957 2296 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
USH2AO75445 CCDC116-201ENST00000292779 2260 ntAPPRIS P2 TSL 1 (best) BASIC6.13□□□□□ -1.43
USH2AO75445 PLIN1-201ENST00000300055 2953 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
USH2AO75445 AC097359.2-201ENST00000604992 2389 ntBASIC6.13□□□□□ -1.43
USH2AO75445 CD6-201ENST00000313421 3252 ntAPPRIS P3 TSL 1 (best) BASIC6.13□□□□□ -1.43
USH2AO75445 BCAR3-210ENST00000539242 2114 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
USH2AO75445 HTR7-201ENST00000277874 3028 ntAPPRIS P4 TSL 1 (best) BASIC6.13□□□□□ -1.43
USH2AO75445 CACNA2D3-201ENST00000288197 3671 ntAPPRIS ALT2 TSL 1 (best) BASIC6.13□□□□□ -1.43
USH2AO75445 CACNA2D3-206ENST00000474759 3675 ntAPPRIS P2 TSL 1 (best) BASIC6.13□□□□□ -1.43
USH2AO75445 ZFP1-201ENST00000332307 1502 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
USH2AO75445 LRRC17-202ENST00000339431 1963 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
USH2AO75445 AC023024.2-201ENST00000623561 1993 ntBASIC6.13□□□□□ -1.43
USH2AO75445 GPR158-AS1-201ENST00000449643 2433 ntTSL 2 BASIC6.13□□□□□ -1.43
USH2AO75445 ZNF764-202ENST00000395091 2970 ntAPPRIS ALT1 TSL 2 BASIC6.13□□□□□ -1.43
USH2AO75445 RANGRF-201ENST00000226105 1009 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
USH2AO75445 FRG1-201ENST00000226798 1074 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
USH2AO75445 VPREB3-201ENST00000248948 610 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
USH2AO75445 PRDX4-201ENST00000379331 852 ntTSL 2 BASIC6.13□□□□□ -1.43
USH2AO75445 VPREB3-202ENST00000398465 503 ntTSL 3 BASIC6.13□□□□□ -1.43
USH2AO75445 RPL10P12-201ENST00000427342 318 ntBASIC6.13□□□□□ -1.43
USH2AO75445 HNRNPA1P3-201ENST00000440968 551 ntBASIC6.13□□□□□ -1.43
USH2AO75445 GS1-124K5.4-201ENST00000445681 540 ntTSL 2 BASIC6.13□□□□□ -1.43
USH2AO75445 SVILP1-203ENST00000450581 486 ntTSL 3 BASIC6.13□□□□□ -1.43
USH2AO75445 AC140481.2-201ENST00000457169 695 ntTSL 2 BASIC6.13□□□□□ -1.43
USH2AO75445 SCOC-209ENST00000512749 841 ntAPPRIS ALT1 TSL 3 BASIC6.13□□□□□ -1.43
USH2AO75445 OCIAD1-226ENST00000513391 1288 ntAPPRIS P1 TSL 5 BASIC6.13□□□□□ -1.43
USH2AO75445 AC096713.1-201ENST00000514650 978 ntBASIC6.13□□□□□ -1.43
USH2AO75445 AC011389.2-201ENST00000514811 365 ntTSL 2 BASIC6.13□□□□□ -1.43
USH2AO75445 AC140658.4-201ENST00000561990 352 ntBASIC6.13□□□□□ -1.43
USH2AO75445 AC091489.1-201ENST00000563866 691 ntTSL 3 BASIC6.13□□□□□ -1.43
USH2AO75445 AP005121.2-201ENST00000583306 1101 ntBASIC6.13□□□□□ -1.43
USH2AO75445 AC136475.7-201ENST00000602949 592 ntBASIC6.13□□□□□ -1.43
USH2AO75445 AC147067.2-201ENST00000608161 289 ntBASIC6.13□□□□□ -1.43
USH2AO75445 AC138907.9-201ENST00000623747 986 ntBASIC6.13□□□□□ -1.43
USH2AO75445 SLC29A2-207ENST00000619145 2380 ntTSL 5 BASIC6.13□□□□□ -1.43
USH2AO75445 STRA6-218ENST00000574278 2455 ntTSL 2 BASIC6.13□□□□□ -1.43
USH2AO75445 FAM110C-201ENST00000327669 3760 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
USH2AO75445 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
USH2AO75445 INSC-205ENST00000525218 1576 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
USH2AO75445 SLC2A9-201ENST00000264784 1850 ntAPPRIS P4 TSL 1 (best) BASIC6.13□□□□□ -1.43
USH2AO75445 JPH4-205ENST00000622501 3489 ntAPPRIS ALT1 TSL 5 BASIC6.13□□□□□ -1.43
USH2AO75445 SPATA20-201ENST00000006658 2719 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
USH2AO75445 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC6.13□□□□□ -1.43
USH2AO75445 FOXI2-201ENST00000388920 3217 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
USH2AO75445 AC011477.7-201ENST00000617163 1440 ntBASIC6.13□□□□□ -1.43
USH2AO75445 PDZD11-201ENST00000239666 1043 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
USH2AO75445 LDHAL6FP-201ENST00000405916 1082 ntBASIC6.13□□□□□ -1.43
USH2AO75445 AC234771.1-201ENST00000416873 250 ntTSL 2 BASIC6.13□□□□□ -1.43
USH2AO75445 AC096919.1-201ENST00000472730 652 ntBASIC6.13□□□□□ -1.43
USH2AO75445 AC109466.1-201ENST00000517508 804 ntTSL 4 BASIC6.13□□□□□ -1.43
USH2AO75445 AC100797.1-201ENST00000520760 316 ntTSL 2 BASIC6.13□□□□□ -1.43
USH2AO75445 AC022634.2-201ENST00000521504 382 ntTSL 3 BASIC6.13□□□□□ -1.43
USH2AO75445 AP003168.2-201ENST00000531215 471 ntTSL 3 BASIC6.13□□□□□ -1.43
USH2AO75445 AL161668.2-201ENST00000531638 492 ntTSL 5 BASIC6.13□□□□□ -1.43
USH2AO75445 AC025265.3-201ENST00000550175 468 ntTSL 3 BASIC6.13□□□□□ -1.43
USH2AO75445 AC090825.2-201ENST00000557959 739 ntBASIC6.13□□□□□ -1.43
USH2AO75445 NR2F2-AS1-210ENST00000561344 966 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
USH2AO75445 GABARAPL2-203ENST00000565057 571 ntTSL 2 BASIC6.13□□□□□ -1.43
USH2AO75445 AC008915.2-201ENST00000570080 730 ntTSL 5 BASIC6.13□□□□□ -1.43
USH2AO75445 ATF7-212ENST00000591397 860 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
USH2AO75445 AC009061.2-204ENST00000602476 524 ntTSL 3 BASIC6.13□□□□□ -1.43
USH2AO75445 MIR941-1-201ENST00000636396 72 ntBASIC6.13□□□□□ -1.43
USH2AO75445 AFTPH-202ENST00000238856 4040 ntAPPRIS P3 TSL 1 (best) BASIC6.13□□□□□ -1.43
USH2AO75445 AC087481.3-201ENST00000602886 1894 ntBASIC6.13□□□□□ -1.43
USH2AO75445 CDH1-202ENST00000422392 2567 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
USH2AO75445 AGK-211ENST00000629555 2765 ntTSL 5 BASIC6.13□□□□□ -1.43
USH2AO75445 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
USH2AO75445 KCNG3-201ENST00000306078 3824 ntAPPRIS P3 TSL 1 (best) BASIC6.13□□□□□ -1.43
USH2AO75445 CNTFR-204ENST00000610543 1926 ntAPPRIS P1 TSL 5 BASIC6.13□□□□□ -1.43
Retrieved 100 of 98,524 protein–RNA pairs in 53.4 ms