Protein–RNA interactions for Protein: P84243

H3F3A, Histone H3.3, humanhuman

Predictions only

Length 136 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
H3F3AP84243 CHRNA5-203ENST00000559554 1051 ntTSL 3 BASIC12.81□□□□□ -0.36
H3F3AP84243 PYY-202ENST00000592796 580 ntAPPRIS ALT1 TSL 1 (best) BASIC12.81□□□□□ -0.36
H3F3AP84243 ALKBH2-208ENST00000619381 895 ntTSL 5 BASIC12.81□□□□□ -0.36
H3F3AP84243 MCRS1-201ENST00000343810 1928 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
H3F3AP84243 TMEM45A-202ENST00000403410 1910 ntTSL 5 BASIC12.81□□□□□ -0.36
H3F3AP84243 MPZL1-203ENST00000392121 3421 ntTSL 2 BASIC12.81□□□□□ -0.36
H3F3AP84243 NCKAP5L-201ENST00000335999 4900 ntAPPRIS P1 TSL 5 BASIC12.81□□□□□ -0.36
H3F3AP84243 MAGI1-218ENST00000621418 6225 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
H3F3AP84243 FLII-201ENST00000327031 4338 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
H3F3AP84243 RAD23A-209ENST00000592268 1526 ntTSL 5 BASIC12.81□□□□□ -0.36
H3F3AP84243 AC009133.1-201ENST00000569981 2449 ntTSL 2 BASIC12.81□□□□□ -0.36
H3F3AP84243 CNOT3-201ENST00000221232 2852 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
H3F3AP84243 RP1L1-202ENST00000382483 7973 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
H3F3AP84243 PLEKHD1-201ENST00000322564 4865 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
H3F3AP84243 CKMT1B-201ENST00000300283 1779 ntAPPRIS P1 TSL 5 BASIC12.81□□□□□ -0.36
H3F3AP84243 RASGEF1B-202ENST00000335927 1756 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
H3F3AP84243 CKMT1A-204ENST00000434505 1779 ntAPPRIS P1 TSL 5 BASIC12.81□□□□□ -0.36
H3F3AP84243 TBC1D24-205ENST00000567020 6673 ntAPPRIS P3 TSL 1 (best) BASIC12.81□□□□□ -0.36
H3F3AP84243 CYB5D2-203ENST00000575251 1588 ntTSL 2 BASIC12.81□□□□□ -0.36
H3F3AP84243 PTPN23-201ENST00000265562 5244 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
H3F3AP84243 UBL7-201ENST00000361351 1360 ntAPPRIS P1 TSL 5 BASIC12.81□□□□□ -0.36
H3F3AP84243 PRKN-204ENST00000366896 2514 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
H3F3AP84243 FASN-201ENST00000306749 8565 ntAPPRIS P2 TSL 1 (best) BASIC12.81□□□□□ -0.36
H3F3AP84243 CLEC18B-204ENST00000617101 2321 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
H3F3AP84243 STRC-205ENST00000450892 5680 ntAPPRIS P2 TSL 5 BASIC12.8□□□□□ -0.36
H3F3AP84243 ECE1-201ENST00000264205 2381 ntAPPRIS P4 TSL 1 (best) BASIC12.8□□□□□ -0.36
H3F3AP84243 USP49-203ENST00000394253 9034 ntAPPRIS P1 TSL 5 BASIC12.8□□□□□ -0.36
H3F3AP84243 GAL3ST4-202ENST00000411994 1404 ntTSL 2 BASIC12.8□□□□□ -0.36
H3F3AP84243 YIPF3-213ENST00000506469 1444 ntTSL 5 BASIC12.8□□□□□ -0.36
H3F3AP84243 LINC01815-202ENST00000641468 1409 ntBASIC12.8□□□□□ -0.36
H3F3AP84243 ATP2B3-201ENST00000263519 6420 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
H3F3AP84243 FAM13B-201ENST00000033079 5465 ntAPPRIS P3 TSL 1 (best) BASIC12.8□□□□□ -0.36
H3F3AP84243 DDX17-202ENST00000396821 4791 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
H3F3AP84243 MAP2K4-201ENST00000353533 3826 ntAPPRIS P3 TSL 1 (best) BASIC12.8□□□□□ -0.36
H3F3AP84243 AL157791.1-201ENST00000553667 1699 ntBASIC12.8□□□□□ -0.36
H3F3AP84243 FBLN2-203ENST00000404922 4318 ntAPPRIS P4 TSL 5 BASIC12.8□□□□□ -0.36
H3F3AP84243 MARS-201ENST00000262027 2905 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
H3F3AP84243 RTFDC1-201ENST00000023939 1745 ntTSL 2 BASIC12.8□□□□□ -0.36
H3F3AP84243 MAGEA4-201ENST00000276344 1724 ntAPPRIS P1 TSL 2 BASIC12.8□□□□□ -0.36
H3F3AP84243 LINC00665-206ENST00000590622 1749 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
H3F3AP84243 SH3D21-205ENST00000505871 2205 ntTSL 2 BASIC12.8□□□□□ -0.36
H3F3AP84243 PLA2G4B-202ENST00000458483 2734 ntAPPRIS P1 TSL 2 BASIC12.8□□□□□ -0.36
H3F3AP84243 HSD17B4-206ENST00000504811 2740 ntTSL 2 BASIC12.8□□□□□ -0.36
H3F3AP84243 TGOLN2-204ENST00000409015 2276 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
H3F3AP84243 DRC3-203ENST00000399187 2008 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
H3F3AP84243 MAX-201ENST00000246163 897 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
H3F3AP84243 FUNDC2P2-201ENST00000331369 1223 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
H3F3AP84243 RANBP1-201ENST00000331821 837 ntAPPRIS P3 TSL 1 (best) BASIC12.8□□□□□ -0.36
H3F3AP84243 THEG-202ENST00000346878 1211 ntAPPRIS ALT2 TSL 2 BASIC12.8□□□□□ -0.36
H3F3AP84243 HNRNPA1P41-201ENST00000397777 928 ntBASIC12.8□□□□□ -0.36
H3F3AP84243 SF3B1-204ENST00000414963 651 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
H3F3AP84243 FNTAP2-201ENST00000430308 634 ntBASIC12.8□□□□□ -0.36
H3F3AP84243 RHEB-207ENST00000496004 744 ntTSL 2 BASIC12.8□□□□□ -0.36
H3F3AP84243 AC005920.3-202ENST00000512717 789 ntTSL 3 BASIC12.8□□□□□ -0.36
H3F3AP84243 AC037486.1-201ENST00000523792 790 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
H3F3AP84243 FKBP5-203ENST00000539068 3827 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
H3F3AP84243 AC129507.4-201ENST00000570501 411 ntTSL 2 BASIC12.8□□□□□ -0.36
H3F3AP84243 AC145207.3-201ENST00000576784 529 ntTSL 5 BASIC12.8□□□□□ -0.36
H3F3AP84243 FAM236A-201ENST00000593662 453 ntAPPRIS ALT2 TSL 2 BASIC12.8□□□□□ -0.36
H3F3AP84243 FAM236B-201ENST00000596535 465 ntAPPRIS P1 TSL 2 BASIC12.8□□□□□ -0.36
H3F3AP84243 Metazoa_SRP.166-201ENST00000612530 253 ntBASIC12.8□□□□□ -0.36
H3F3AP84243 BAP1-211ENST00000615113 489 ntBASIC12.8□□□□□ -0.36
H3F3AP84243 NAP1L6-202ENST00000641404 1222 ntBASIC12.8□□□□□ -0.36
H3F3AP84243 KDM5B-202ENST00000367264 6449 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
H3F3AP84243 CUX1-214ENST00000550008 4350 ntAPPRIS ALT2 TSL 5 BASIC12.8□□□□□ -0.36
H3F3AP84243 ANKRD11-203ENST00000378330 9132 ntAPPRIS P2 TSL 1 (best) BASIC12.8□□□□□ -0.36
H3F3AP84243 TCAIM-201ENST00000342649 3687 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
H3F3AP84243 PUF60-209ENST00000527197 1559 ntTSL 5 BASIC12.8□□□□□ -0.36
H3F3AP84243 ZC3HAV1-203ENST00000464606 4776 ntAPPRIS ALT2 TSL 5 BASIC12.8□□□□□ -0.36
H3F3AP84243 H6PD-203ENST00000602477 5590 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
H3F3AP84243 NBPF3-205ENST00000454000 2133 ntAPPRIS ALT2 TSL 2 BASIC12.8□□□□□ -0.36
H3F3AP84243 EFHC1-227ENST00000637089 2133 ntTSL 5 BASIC12.8□□□□□ -0.36
H3F3AP84243 DUSP18-204ENST00000403268 2920 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
H3F3AP84243 APBB1-203ENST00000389906 2684 ntAPPRIS ALT1 TSL 5 BASIC12.8□□□□□ -0.36
H3F3AP84243 AGRN-201ENST00000379370 7323 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
H3F3AP84243 FUK-201ENST00000288078 4081 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
H3F3AP84243 ACP2-212ENST00000533929 1366 ntTSL 2 BASIC12.8□□□□□ -0.36
H3F3AP84243 PLXNB3-209ENST00000538966 6377 ntAPPRIS ALT2 TSL 5 BASIC12.8□□□□□ -0.36
H3F3AP84243 CYB561D1-201ENST00000310611 5009 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
H3F3AP84243 MEOX2-201ENST00000262041 2500 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
H3F3AP84243 PKD1P6-NPIPP1-202ENST00000605794 2902 ntTSL 2 BASIC12.79□□□□□ -0.36
H3F3AP84243 RPL13AP3-202ENST00000494676 1473 ntBASIC12.79□□□□□ -0.36
H3F3AP84243 ACVR1C-204ENST00000409680 1786 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
H3F3AP84243 AL022326.1-201ENST00000434516 1778 ntTSL 2 BASIC12.79□□□□□ -0.36
H3F3AP84243 GABRB2-205ENST00000517901 1779 ntTSL 5 BASIC12.79□□□□□ -0.36
H3F3AP84243 AC011474.4-201ENST00000623523 2076 ntBASIC12.79□□□□□ -0.36
H3F3AP84243 ELN-203ENST00000320492 2991 ntAPPRIS ALT2 TSL 2 BASIC12.79□□□□□ -0.36
H3F3AP84243 LATS1-207ENST00000543571 7517 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
H3F3AP84243 GRSF1-201ENST00000254799 6666 ntAPPRIS P1 TSL 5 BASIC12.79□□□□□ -0.36
H3F3AP84243 APBB3-201ENST00000354402 1810 ntTSL 5 BASIC12.79□□□□□ -0.36
H3F3AP84243 RARS2-201ENST00000369536 1818 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
H3F3AP84243 FERMT1-201ENST00000217289 5151 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
H3F3AP84243 RBFADN-204ENST00000568911 5187 ntTSL 2 BASIC12.79□□□□□ -0.36
H3F3AP84243 AL589669.1-201ENST00000639829 1506 ntTSL 5 BASIC12.79□□□□□ -0.36
H3F3AP84243 USP39-220ENST00000613444 2161 ntTSL 2 BASIC12.79□□□□□ -0.36
H3F3AP84243 SERP1-201ENST00000239944 3171 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
H3F3AP84243 PEX5L-211ENST00000472994 2235 ntAPPRIS ALT2 TSL 2 BASIC12.79□□□□□ -0.36
H3F3AP84243 KIF1A-213ENST00000498729 9221 ntTSL 5 BASIC12.79□□□□□ -0.36
H3F3AP84243 ARF5-201ENST00000000233 1103 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
H3F3AP84243 HIST1H2AJ-201ENST00000333151 387 ntAPPRIS P1 BASIC12.79□□□□□ -0.36
Retrieved 100 of 98,524 protein–RNA pairs in 39.9 ms