Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 IL1RAPL2-202ENST00000372582 2985 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
FOXA1P55317 AFDN-205ENST00000392108 6812 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
FOXA1P55317 GFAP-201ENST00000253408 3135 ntTSL 5 BASIC13.87□□□□□ -0.19
FOXA1P55317 CC2D1B-201ENST00000284376 3377 ntAPPRIS ALT2 TSL 5 BASIC13.87□□□□□ -0.19
FOXA1P55317 TMEM201-201ENST00000340305 3851 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
FOXA1P55317 URGCP-207ENST00000453200 4042 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
FOXA1P55317 ANKRD20A19P-202ENST00000442969 2796 ntTSL 2 BASIC13.87□□□□□ -0.19
FOXA1P55317 PRR26-202ENST00000441152 2251 ntAPPRIS P1 TSL 2 BASIC13.87□□□□□ -0.19
FOXA1P55317 SLC4A8-205ENST00000535225 2262 ntTSL 2 BASIC13.87□□□□□ -0.19
FOXA1P55317 ACTG1-206ENST00000573283 2002 ntAPPRIS P1 TSL 5 BASIC13.87□□□□□ -0.19
FOXA1P55317 ADGRE2-208ENST00000595839 2046 ntTSL 5 BASIC13.87□□□□□ -0.19
FOXA1P55317 CETP-201ENST00000200676 1791 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
FOXA1P55317 METAP1D-201ENST00000315796 3419 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
FOXA1P55317 NDUFB7-201ENST00000215565 531 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
FOXA1P55317 MTHFSD-202ENST00000381214 1210 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
FOXA1P55317 PEMT-203ENST00000395782 895 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
FOXA1P55317 KCNQ1-AS1-201ENST00000440887 1084 ntTSL 5 BASIC13.87□□□□□ -0.19
FOXA1P55317 RPL7P3-201ENST00000441388 714 ntBASIC13.87□□□□□ -0.19
FOXA1P55317 UEVLD-212ENST00000541984 755 ntTSL 3 BASIC13.87□□□□□ -0.19
FOXA1P55317 C1RL-212ENST00000545337 813 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
FOXA1P55317 AC124068.2-202ENST00000562356 612 ntTSL 3 BASIC13.87□□□□□ -0.19
FOXA1P55317 AC124068.2-201ENST00000569473 1109 ntBASIC13.87□□□□□ -0.19
FOXA1P55317 KRT18P8-201ENST00000581937 1246 ntBASIC13.87□□□□□ -0.19
FOXA1P55317 AC239798.4-201ENST00000609879 700 ntTSL 2 BASIC13.87□□□□□ -0.19
FOXA1P55317 LCN8-205ENST00000612714 638 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
FOXA1P55317 SPIN2A-203ENST00000614076 966 ntTSL 3 BASIC13.87□□□□□ -0.19
FOXA1P55317 AMT-239ENST00000636865 1914 ntTSL 5 BASIC13.87□□□□□ -0.19
FOXA1P55317 USP2-201ENST00000260187 3732 ntAPPRIS P4 TSL 1 (best) BASIC13.87□□□□□ -0.19
FOXA1P55317 TJAP1-208ENST00000438588 2716 ntTSL 5 BASIC13.87□□□□□ -0.19
FOXA1P55317 IL17RD-201ENST00000296318 8720 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
FOXA1P55317 ABCF3-201ENST00000292808 2453 ntAPPRIS ALT1 TSL 2 BASIC13.87□□□□□ -0.19
FOXA1P55317 F2-205ENST00000530231 1849 ntTSL 5 BASIC13.87□□□□□ -0.19
FOXA1P55317 A1CF-202ENST00000373993 1997 ntAPPRIS P4 TSL 1 (best) BASIC13.87□□□□□ -0.19
FOXA1P55317 ASPG-206ENST00000551177 4851 ntAPPRIS P2 TSL 1 (best) BASIC13.87□□□□□ -0.19
FOXA1P55317 AL356585.2-201ENST00000625078 2396 ntBASIC13.87□□□□□ -0.19
FOXA1P55317 LIMD2-201ENST00000259006 3193 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
FOXA1P55317 LSM14A-203ENST00000544216 3596 ntAPPRIS P3 TSL 1 (best) BASIC13.87□□□□□ -0.19
FOXA1P55317 GNG4-202ENST00000366598 1721 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
FOXA1P55317 AC245123.1-202ENST00000612422 1719 ntTSL 5 BASIC13.87□□□□□ -0.19
FOXA1P55317 ARMC7-201ENST00000245543 2126 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
FOXA1P55317 XRCC6-202ENST00000360079 2296 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
FOXA1P55317 SUPT7L-203ENST00000405491 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC13.87□□□□□ -0.19
FOXA1P55317 PPP2R1B-204ENST00000426998 1888 ntAPPRIS ALT2 TSL 2 BASIC13.87□□□□□ -0.19
FOXA1P55317 AAR2-201ENST00000320849 2430 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
FOXA1P55317 HMGCS2-201ENST00000369406 2428 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
FOXA1P55317 ANO6-202ENST00000423947 5504 ntAPPRIS ALT2 TSL 1 (best) BASIC13.86□□□□□ -0.19
FOXA1P55317 SLC35B2-206ENST00000615337 2014 ntTSL 4 BASIC13.86□□□□□ -0.19
FOXA1P55317 KIZ-213ENST00000620891 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC13.86□□□□□ -0.19
FOXA1P55317 MAPK4-206ENST00000592595 4330 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
FOXA1P55317 MAP7D2-201ENST00000379643 3918 ntAPPRIS ALT2 TSL 1 (best) BASIC13.86□□□□□ -0.19
FOXA1P55317 GDPD5-201ENST00000336898 3523 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
FOXA1P55317 STX3-207ENST00000633708 3111 ntTSL 5 BASIC13.86□□□□□ -0.19
FOXA1P55317 MX1-202ENST00000398598 2850 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
FOXA1P55317 LRRK1-201ENST00000388948 7671 ntAPPRIS P1 TSL 5 BASIC13.86□□□□□ -0.19
FOXA1P55317 ZBTB1-201ENST00000358738 4119 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
FOXA1P55317 GTF2IRD2B-203ENST00000472837 3560 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
FOXA1P55317 IFNA6-202ENST00000380210 1544 ntAPPRIS P1 BASIC13.86□□□□□ -0.19
FOXA1P55317 NCF2-201ENST00000367535 2226 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
FOXA1P55317 HOXC4-202ENST00000430889 1666 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
FOXA1P55317 AP001062.1-201ENST00000448927 4354 ntTSL 2 BASIC13.86□□□□□ -0.19
FOXA1P55317 STK3-201ENST00000419617 2826 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
FOXA1P55317 PRPSAP1-206ENST00000446526 3660 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
FOXA1P55317 EBLN3P-202ENST00000625445 4520 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
FOXA1P55317 AC211486.1-201ENST00000275590 980 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
FOXA1P55317 LAMTOR4-201ENST00000341942 605 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
FOXA1P55317 EBF3-201ENST00000355311 2993 ntAPPRIS ALT1 TSL 5 BASIC13.86□□□□□ -0.19
FOXA1P55317 MPV17-206ENST00000402722 827 ntTSL 3 BASIC13.86□□□□□ -0.19
FOXA1P55317 LARGE-AS1-202ENST00000424291 1065 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
FOXA1P55317 KRT43P-201ENST00000434019 910 ntBASIC13.86□□□□□ -0.19
FOXA1P55317 IQCF3-203ENST00000444293 450 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
FOXA1P55317 AC124944.1-201ENST00000448113 625 ntTSL 2 BASIC13.86□□□□□ -0.19
FOXA1P55317 AP000696.1-201ENST00000457669 1133 ntTSL 3 BASIC13.86□□□□□ -0.19
FOXA1P55317 LHX6-205ENST00000464484 666 ntTSL 2 BASIC13.86□□□□□ -0.19
FOXA1P55317 ANAPC13-205ENST00000511751 896 ntAPPRIS P1 TSL 3 BASIC13.86□□□□□ -0.19
FOXA1P55317 CEP57L1-208ENST00000519095 908 ntTSL 3 BASIC13.86□□□□□ -0.19
FOXA1P55317 CCDC86-203ENST00000545580 697 ntAPPRIS ALT2 TSL 3 BASIC13.86□□□□□ -0.19
FOXA1P55317 NCR1-206ENST00000598576 996 ntAPPRIS ALT2 TSL 5 BASIC13.86□□□□□ -0.19
FOXA1P55317 FAM66A-202ENST00000602658 546 ntTSL 5 BASIC13.86□□□□□ -0.19
FOXA1P55317 RAB34-222ENST00000625712 994 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
FOXA1P55317 PDLIM3-213ENST00000629667 1016 ntTSL 5 BASIC13.86□□□□□ -0.19
FOXA1P55317 LGALS12-202ENST00000340246 1425 ntAPPRIS ALT2 TSL 1 (best) BASIC13.86□□□□□ -0.19
FOXA1P55317 PLSCR1-214ENST00000487389 1443 ntAPPRIS ALT2 TSL 5 BASIC13.86□□□□□ -0.19
FOXA1P55317 ZNF202-207ENST00000530393 3564 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
FOXA1P55317 XIRP1-203ENST00000421646 2596 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
FOXA1P55317 MEX3B-202ENST00000558133 4333 ntBASIC13.86□□□□□ -0.19
FOXA1P55317 PPP3CA-202ENST00000394853 3604 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
FOXA1P55317 MAPKBP1-215ENST00000514566 5394 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
FOXA1P55317 MKL1-202ENST00000396617 4505 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
FOXA1P55317 CAP2-209ENST00000616440 2776 ntTSL 2 BASIC13.86□□□□□ -0.19
FOXA1P55317 TRIM4-201ENST00000349062 3374 ntAPPRIS ALT2 TSL 1 (best) BASIC13.86□□□□□ -0.19
FOXA1P55317 UROD-201ENST00000246337 1300 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
FOXA1P55317 FMNL3-205ENST00000550488 4120 ntAPPRIS ALT2 TSL 5 BASIC13.86□□□□□ -0.19
FOXA1P55317 TAF9-202ENST00000328663 1461 ntAPPRIS P2 TSL 2 BASIC13.86□□□□□ -0.19
FOXA1P55317 CKMT2-203ENST00000437669 1479 ntAPPRIS P1 TSL 5 BASIC13.86□□□□□ -0.19
FOXA1P55317 AC082651.3-201ENST00000474667 1947 ntTSL 2 BASIC13.86□□□□□ -0.19
FOXA1P55317 LAMP2-203ENST00000434600 2089 ntAPPRIS ALT2 TSL 1 (best) BASIC13.86□□□□□ -0.19
FOXA1P55317 SLC43A3-214ENST00000529554 2207 ntAPPRIS P3 TSL 2 BASIC13.86□□□□□ -0.19
FOXA1P55317 AL445250.1-201ENST00000641671 2259 ntBASIC13.85□□□□□ -0.19
FOXA1P55317 SEZ6L-209ENST00000529632 6534 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
FOXA1P55317 HPGD-209ENST00000510901 1535 ntTSL 2 BASIC13.85□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 63.7 ms