Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 ASS1P1-201ENST00000402854 1237 ntBASIC14.62□□□□□ -0.07
COL9A1P20849 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC14.62□□□□□ -0.07
COL9A1P20849 COPS7B-204ENST00000409091 806 ntTSL 5 BASIC14.62□□□□□ -0.07
COL9A1P20849 EIF4E2-205ENST00000409394 604 ntTSL 3 BASIC14.62□□□□□ -0.07
COL9A1P20849 AL669831.5-220ENST00000412115 581 ntTSL 3 BASIC14.62□□□□□ -0.07
COL9A1P20849 AL606970.4-201ENST00000424343 455 ntTSL 2 BASIC14.62□□□□□ -0.07
COL9A1P20849 HVCN1-203ENST00000439744 1215 ntTSL 2 BASIC14.62□□□□□ -0.07
COL9A1P20849 AC103563.2-201ENST00000442200 597 ntTSL 5 BASIC14.62□□□□□ -0.07
COL9A1P20849 LINC01563-201ENST00000456235 750 ntTSL 2 BASIC14.62□□□□□ -0.07
COL9A1P20849 AC108462.1-201ENST00000457467 850 ntTSL 3 BASIC14.62□□□□□ -0.07
COL9A1P20849 RN7SL277P-201ENST00000481521 288 ntBASIC14.62□□□□□ -0.07
COL9A1P20849 RN7SL530P-201ENST00000485097 298 ntBASIC14.62□□□□□ -0.07
COL9A1P20849 MAGED4B-207ENST00000485287 2618 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
COL9A1P20849 PLSCR1-214ENST00000487389 1443 ntAPPRIS ALT2 TSL 5 BASIC14.62□□□□□ -0.07
COL9A1P20849 PAGE3-202ENST00000519203 577 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
COL9A1P20849 UBR5-AS1-202ENST00000520820 800 ntTSL 2 BASIC14.62□□□□□ -0.07
COL9A1P20849 TIMM10-202ENST00000525158 530 ntAPPRIS P1 TSL 2 BASIC14.62□□□□□ -0.07
COL9A1P20849 AP002353.1-201ENST00000528257 1599 ntBASIC14.62□□□□□ -0.07
COL9A1P20849 HNRNPA1P72-201ENST00000529511 967 ntBASIC14.62□□□□□ -0.07
COL9A1P20849 SELENOK-205ENST00000541726 814 ntAPPRIS ALT1 TSL 5 BASIC14.62□□□□□ -0.07
COL9A1P20849 CACNA1C-IT3-201ENST00000542680 622 ntTSL 3 BASIC14.62□□□□□ -0.07
COL9A1P20849 HNRNPA1P5-201ENST00000558213 966 ntBASIC14.62□□□□□ -0.07
COL9A1P20849 AC129507.4-201ENST00000570501 411 ntTSL 2 BASIC14.62□□□□□ -0.07
COL9A1P20849 SNHG25-202ENST00000582965 278 ntTSL 2 BASIC14.62□□□□□ -0.07
COL9A1P20849 MIR1587-201ENST00000583319 53 ntBASIC14.62□□□□□ -0.07
COL9A1P20849 SMIM22-207ENST00000589721 822 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
COL9A1P20849 AC008747.1-201ENST00000592220 442 ntTSL 3 BASIC14.62□□□□□ -0.07
COL9A1P20849 IFNL3P1-201ENST00000595082 501 ntBASIC14.62□□□□□ -0.07
COL9A1P20849 RPL18A-203ENST00000599870 1084 ntTSL 2 BASIC14.62□□□□□ -0.07
COL9A1P20849 AC034229.4-201ENST00000607861 441 ntBASIC14.62□□□□□ -0.07
COL9A1P20849 WHRN-202ENST00000362057 3566 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
COL9A1P20849 MYEF2-201ENST00000267836 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
COL9A1P20849 UBA5-213ENST00000494238 2997 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
COL9A1P20849 ZNF79-201ENST00000342483 2078 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
COL9A1P20849 ALDH4A1-205ENST00000538309 1940 ntTSL 2 BASIC14.62□□□□□ -0.07
COL9A1P20849 DGKZ-205ENST00000456247 3482 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
COL9A1P20849 PCBP2-215ENST00000549863 1619 ntTSL 5 BASIC14.62□□□□□ -0.07
COL9A1P20849 BSDC1-203ENST00000419121 1473 ntTSL 2 BASIC14.62□□□□□ -0.07
COL9A1P20849 MTCL1-205ENST00000517570 6009 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
COL9A1P20849 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC14.62□□□□□ -0.07
COL9A1P20849 KDM6A-211ENST00000536777 5633 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
COL9A1P20849 TLL1-206ENST00000513213 1829 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
COL9A1P20849 LONP1-213ENST00000590729 2626 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
COL9A1P20849 STBD1-201ENST00000237642 3420 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
COL9A1P20849 OXSM-201ENST00000280701 1519 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
COL9A1P20849 BSDC1-205ENST00000446293 1505 ntTSL 2 BASIC14.61□□□□□ -0.07
COL9A1P20849 GNAL-202ENST00000334049 6535 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
COL9A1P20849 CCNH-201ENST00000256897 1378 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
COL9A1P20849 MAGEA2-203ENST00000611557 2024 ntAPPRIS P1 TSL 5 BASIC14.61□□□□□ -0.07
COL9A1P20849 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC14.61□□□□□ -0.07
COL9A1P20849 SLC7A5-201ENST00000261622 4537 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
COL9A1P20849 KCNT1-202ENST00000371757 4717 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
COL9A1P20849 AGAP7P-201ENST00000582299 2062 ntBASIC14.61□□□□□ -0.07
COL9A1P20849 AGAP14-201ENST00000624701 2060 ntBASIC14.61□□□□□ -0.07
COL9A1P20849 AC026992.2-202ENST00000565312 1934 ntTSL 5 BASIC14.61□□□□□ -0.07
COL9A1P20849 HMGXB3-202ENST00000503427 5275 ntAPPRIS ALT2 TSL 5 BASIC14.61□□□□□ -0.07
COL9A1P20849 CRY1-201ENST00000008527 3267 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
COL9A1P20849 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
COL9A1P20849 PIP5K1A-202ENST00000368888 2134 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
COL9A1P20849 MAPK13-202ENST00000373759 1036 ntTSL 5 BASIC14.61□□□□□ -0.07
COL9A1P20849 PPP1R2P10-201ENST00000393023 595 ntBASIC14.61□□□□□ -0.07
COL9A1P20849 ATG10-IT1-201ENST00000396880 487 ntBASIC14.61□□□□□ -0.07
COL9A1P20849 AC006455.6-201ENST00000426192 893 ntBASIC14.61□□□□□ -0.07
COL9A1P20849 GAS5-209ENST00000430245 723 ntTSL 3 BASIC14.61□□□□□ -0.07
COL9A1P20849 AL355500.1-201ENST00000439421 297 ntTSL 3 BASIC14.61□□□□□ -0.07
COL9A1P20849 KRT19P4-201ENST00000443208 943 ntBASIC14.61□□□□□ -0.07
COL9A1P20849 AC018635.1-201ENST00000468292 1030 ntBASIC14.61□□□□□ -0.07
COL9A1P20849 CAB39P1-201ENST00000502277 460 ntBASIC14.61□□□□□ -0.07
COL9A1P20849 AC138956.1-201ENST00000508187 504 ntTSL 3 BASIC14.61□□□□□ -0.07
COL9A1P20849 HINT1-205ENST00000508488 703 ntTSL 2 BASIC14.61□□□□□ -0.07
COL9A1P20849 CD164-210ENST00000512821 964 ntTSL 2 BASIC14.61□□□□□ -0.07
COL9A1P20849 AC010226.1-203ENST00000515570 765 ntTSL 2 BASIC14.61□□□□□ -0.07
COL9A1P20849 AP000640.1-201ENST00000525337 879 ntTSL 2 BASIC14.61□□□□□ -0.07
COL9A1P20849 AP003043.1-201ENST00000527804 547 ntTSL 4 BASIC14.61□□□□□ -0.07
COL9A1P20849 AL121790.1-201ENST00000554829 738 ntTSL 3 BASIC14.61□□□□□ -0.07
COL9A1P20849 PLA2G15-209ENST00000566188 1203 ntTSL 2 BASIC14.61□□□□□ -0.07
COL9A1P20849 CARHSP1-208ENST00000567554 598 ntAPPRIS P1 TSL 2 BASIC14.61□□□□□ -0.07
COL9A1P20849 AC104961.2-201ENST00000578129 663 ntTSL 2 BASIC14.61□□□□□ -0.07
COL9A1P20849 AC002985.1-201ENST00000596918 685 ntAPPRIS P1 TSL 5 BASIC14.61□□□□□ -0.07
COL9A1P20849 AL135936.1-201ENST00000617956 998 ntTSL 5 BASIC14.61□□□□□ -0.07
COL9A1P20849 AC009975.2-202ENST00000634539 854 ntTSL 5 BASIC14.61□□□□□ -0.07
COL9A1P20849 B3GAT1-201ENST00000312527 3652 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
COL9A1P20849 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
COL9A1P20849 HSPA12B-201ENST00000254963 3151 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
COL9A1P20849 MKRN3-201ENST00000314520 2337 ntAPPRIS P1 BASIC14.61□□□□□ -0.07
COL9A1P20849 REC8-209ENST00000611366 2331 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
COL9A1P20849 AC138904.3-201ENST00000635780 2681 ntTSL 5 BASIC14.61□□□□□ -0.07
COL9A1P20849 CRYL1-201ENST00000298248 1485 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
COL9A1P20849 IL23R-202ENST00000395227 1459 ntTSL 3 BASIC14.61□□□□□ -0.07
COL9A1P20849 FUT3-209ENST00000589918 2182 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
COL9A1P20849 RBCK1-201ENST00000353660 2511 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
COL9A1P20849 SLC39A8-202ENST00000394833 3238 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
COL9A1P20849 FUK-207ENST00000571514 3054 ntTSL 2 BASIC14.61□□□□□ -0.07
COL9A1P20849 PLCH1-AS1-201ENST00000475196 1308 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
COL9A1P20849 BRAT1-201ENST00000340611 2915 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
COL9A1P20849 JAK3-201ENST00000458235 5432 ntAPPRIS P2 TSL 5 BASIC14.61□□□□□ -0.07
COL9A1P20849 PSG4-203ENST00000433626 1887 ntTSL 2 BASIC14.61□□□□□ -0.07
COL9A1P20849 MGAT1-201ENST00000307826 2761 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
COL9A1P20849 ANKRD35-201ENST00000355594 3342 ntAPPRIS P1 TSL 2 BASIC14.61□□□□□ -0.07
COL9A1P20849 CRK-201ENST00000300574 3880 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 39.7 ms