Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 AL512631.1-201ENST00000604086 840 ntBASIC14.25□□□□□ -0.13
COL6A3P12111 SNORA50D-202ENST00000627561 132 ntBASIC14.25□□□□□ -0.13
COL6A3P12111 HFE-204ENST00000349999 1704 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
COL6A3P12111 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
COL6A3P12111 CD68-201ENST00000250092 1878 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
COL6A3P12111 TMEM200A-204ENST00000617887 2899 ntAPPRIS P1 TSL 2 BASIC14.25□□□□□ -0.13
COL6A3P12111 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC14.24□□□□□ -0.13
COL6A3P12111 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
COL6A3P12111 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
COL6A3P12111 TRAP1-201ENST00000246957 2296 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
COL6A3P12111 MKNK1-205ENST00000428112 1270 ntAPPRIS P3 TSL 2 BASIC14.24□□□□□ -0.13
COL6A3P12111 AL391152.1-202ENST00000551408 624 ntTSL 3 BASIC14.24□□□□□ -0.13
COL6A3P12111 MIR4526-201ENST00000583168 87 ntBASIC14.24□□□□□ -0.13
COL6A3P12111 AC011456.1-201ENST00000592270 536 ntTSL 4 BASIC14.24□□□□□ -0.13
COL6A3P12111 CRABP2-204ENST00000621784 1033 ntAPPRIS P1 TSL 3 BASIC14.24□□□□□ -0.13
COL6A3P12111 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC14.24□□□□□ -0.13
COL6A3P12111 GP5-201ENST00000401815 3534 ntAPPRIS P1 BASIC14.24□□□□□ -0.13
COL6A3P12111 SIRT2-202ENST00000358931 1912 ntTSL 5 BASIC14.24□□□□□ -0.13
COL6A3P12111 HPRT1-201ENST00000298556 1407 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
COL6A3P12111 SF3B4-201ENST00000271628 2085 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
COL6A3P12111 LINC00900-201ENST00000499809 3322 ntTSL 2 BASIC14.24□□□□□ -0.13
COL6A3P12111 CAPN14-202ENST00000403897 2197 ntAPPRIS P1 TSL 2 BASIC14.24□□□□□ -0.13
COL6A3P12111 DNM1-208ENST00000486160 3181 ntAPPRIS ALT1 TSL 1 (best) BASIC14.24□□□□□ -0.13
COL6A3P12111 ZNF829-201ENST00000391711 1805 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
COL6A3P12111 PYGM-202ENST00000377432 2611 ntTSL 2 BASIC14.24□□□□□ -0.13
COL6A3P12111 CHN2-201ENST00000222792 3530 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
COL6A3P12111 GOLGA8G-203ENST00000525590 2009 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
COL6A3P12111 GOLGA8F-202ENST00000532622 2009 ntAPPRIS P5 TSL 5 BASIC14.24□□□□□ -0.13
COL6A3P12111 PPP3CB-AS1-201ENST00000422977 930 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
COL6A3P12111 CD37-203ENST00000426897 1204 ntTSL 2 BASIC14.24□□□□□ -0.13
COL6A3P12111 ENTPD1-AS1-210ENST00000452942 864 ntTSL 3 BASIC14.24□□□□□ -0.13
COL6A3P12111 RPL38-206ENST00000533498 532 ntAPPRIS P2 TSL 2 BASIC14.24□□□□□ -0.13
COL6A3P12111 AC091564.7-201ENST00000545572 464 ntTSL 3 BASIC14.24□□□□□ -0.13
COL6A3P12111 RN7SL733P-201ENST00000582253 329 ntBASIC14.24□□□□□ -0.13
COL6A3P12111 AL589743.3-201ENST00000604121 517 ntBASIC14.24□□□□□ -0.13
COL6A3P12111 RN7SL248P-201ENST00000615117 329 ntBASIC14.24□□□□□ -0.13
COL6A3P12111 RN7SL453P-201ENST00000620275 329 ntBASIC14.24□□□□□ -0.13
COL6A3P12111 TBC1D3P1-201ENST00000590047 1693 ntBASIC14.24□□□□□ -0.13
COL6A3P12111 TIGD2-202ENST00000603357 3217 ntAPPRIS P1 TSL 4 BASIC14.24□□□□□ -0.13
COL6A3P12111 BAG1-210ENST00000634734 3786 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
COL6A3P12111 GSN-209ENST00000449733 2702 ntTSL 2 BASIC14.24□□□□□ -0.13
COL6A3P12111 AC132872.4-202ENST00000622924 2756 ntBASIC14.24□□□□□ -0.13
COL6A3P12111 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC14.24□□□□□ -0.13
COL6A3P12111 KEAP1-201ENST00000171111 2955 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
COL6A3P12111 FXYD2-201ENST00000260287 513 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
COL6A3P12111 TMEM107-201ENST00000316425 756 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
COL6A3P12111 OR7E122P-201ENST00000383606 1017 ntBASIC14.24□□□□□ -0.13
COL6A3P12111 OR10AA1P-201ENST00000417823 937 ntBASIC14.24□□□□□ -0.13
COL6A3P12111 E2F6P4-201ENST00000468625 514 ntBASIC14.24□□□□□ -0.13
COL6A3P12111 TCP10-205ENST00000476779 646 ntAPPRIS ALT2 TSL 3 BASIC14.24□□□□□ -0.13
COL6A3P12111 NR2F2-AS1-210ENST00000561344 966 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
COL6A3P12111 AZU1P1-201ENST00000603479 385 ntBASIC14.24□□□□□ -0.13
COL6A3P12111 HIST1H4K-201ENST00000611927 312 ntAPPRIS P1 BASIC14.24□□□□□ -0.13
COL6A3P12111 TNNI2-206ENST00000617947 699 ntAPPRIS ALT1 TSL 5 BASIC14.24□□□□□ -0.13
COL6A3P12111 MYCNOS-202ENST00000641263 1313 ntBASIC14.24□□□□□ -0.13
COL6A3P12111 PEX11B-203ENST00000537888 1632 ntTSL 2 BASIC14.24□□□□□ -0.13
COL6A3P12111 AC004554.2-201ENST00000634846 1893 ntTSL 5 BASIC14.24□□□□□ -0.13
COL6A3P12111 THY1-206ENST00000528522 2050 ntAPPRIS P1 TSL 2 BASIC14.24□□□□□ -0.13
COL6A3P12111 TXNDC2-206ENST00000611534 2066 ntAPPRIS ALT2 TSL 5 BASIC14.24□□□□□ -0.13
COL6A3P12111 ELOF1-203ENST00000586683 2154 ntTSL 2 BASIC14.24□□□□□ -0.13
COL6A3P12111 ENDOV-212ENST00000520284 2500 ntTSL 2 BASIC14.23□□□□□ -0.13
COL6A3P12111 DTX3-202ENST00000548198 3199 ntAPPRIS P3 TSL 2 BASIC14.23□□□□□ -0.13
COL6A3P12111 NOMO2-211ENST00000621364 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
COL6A3P12111 SLC26A5-203ENST00000354356 2686 ntAPPRIS ALT1 TSL 5 BASIC14.23□□□□□ -0.13
COL6A3P12111 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
COL6A3P12111 CCDC155-201ENST00000447857 2378 ntAPPRIS P2 TSL 1 (best) BASIC14.23□□□□□ -0.13
COL6A3P12111 PDK2-201ENST00000007708 2384 ntTSL 2 BASIC14.23□□□□□ -0.13
COL6A3P12111 ZFP1-201ENST00000332307 1502 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
COL6A3P12111 CD9-212ENST00000610354 1315 ntTSL 5 BASIC14.23□□□□□ -0.13
COL6A3P12111 EGLN3-209ENST00000553215 1004 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
COL6A3P12111 AC239859.5-201ENST00000614100 1232 ntBASIC14.23□□□□□ -0.13
COL6A3P12111 FGFR4-201ENST00000292408 3122 ntAPPRIS P4 TSL 1 (best) BASIC14.23□□□□□ -0.13
COL6A3P12111 AL391005.1-201ENST00000623953 2435 ntBASIC14.23□□□□□ -0.13
COL6A3P12111 OGFOD2-202ENST00000397389 2308 ntTSL 2 BASIC14.23□□□□□ -0.13
COL6A3P12111 PLAA-205ENST00000520884 2041 ntTSL 2 BASIC14.23□□□□□ -0.13
COL6A3P12111 AC008741.2-201ENST00000612792 3115 ntBASIC14.23□□□□□ -0.13
COL6A3P12111 HPGD-213ENST00000541923 2920 ntTSL 2 BASIC14.23□□□□□ -0.13
COL6A3P12111 ELMOD1-201ENST00000265840 2852 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
COL6A3P12111 CPSF7-202ENST00000394888 3650 ntAPPRIS P4 TSL 2 BASIC14.23□□□□□ -0.13
COL6A3P12111 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
COL6A3P12111 PSMC3-213ENST00000619920 1580 ntAPPRIS P2 TSL 1 (best) BASIC14.23□□□□□ -0.13
COL6A3P12111 AL390038.1-201ENST00000419814 2481 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
COL6A3P12111 AL359258.1-201ENST00000438965 2481 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
COL6A3P12111 ANKDD1A-207ENST00000496660 1477 ntTSL 2 BASIC14.23□□□□□ -0.13
COL6A3P12111 HMBS-202ENST00000392841 1411 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
COL6A3P12111 ANKMY1-210ENST00000406958 2396 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
COL6A3P12111 PRL-203ENST00000617911 1364 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
COL6A3P12111 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
COL6A3P12111 SNORA30.1-201ENST00000363193 129 ntBASIC14.23□□□□□ -0.13
COL6A3P12111 RAB13-201ENST00000368575 1176 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
COL6A3P12111 RN7SL559P-201ENST00000476501 297 ntBASIC14.23□□□□□ -0.13
COL6A3P12111 OCIAD1-226ENST00000513391 1288 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
COL6A3P12111 AC068152.1-205ENST00000575173 1081 ntTSL 3 BASIC14.23□□□□□ -0.13
COL6A3P12111 AL596094.1-201ENST00000608273 276 ntTSL 2 BASIC14.23□□□□□ -0.13
COL6A3P12111 AC020763.2-201ENST00000623155 1255 ntBASIC14.23□□□□□ -0.13
COL6A3P12111 CACFD1-206ENST00000540581 2880 ntAPPRIS ALT2 TSL 2 BASIC14.23□□□□□ -0.13
COL6A3P12111 F2-201ENST00000311907 2023 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
COL6A3P12111 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
COL6A3P12111 FERMT3-202ENST00000345728 2481 ntAPPRIS ALT1 TSL 1 (best) BASIC14.23□□□□□ -0.13
COL6A3P12111 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC14.23□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 34.5 ms