Protein–RNA interactions for Protein: Q9NY35

CLDND1, Claudin domain-containing protein 1, humanhuman

Predictions only

Length 253 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDND1Q9NY35 DACT2-202ENST00000366796 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC23.86■■□□□ 1.41
CLDND1Q9NY35 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC23.86■■□□□ 1.41
CLDND1Q9NY35 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC23.86■■□□□ 1.41
CLDND1Q9NY35 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
CLDND1Q9NY35 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
CLDND1Q9NY35 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC23.86■■□□□ 1.41
CLDND1Q9NY35 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC23.86■■□□□ 1.41
CLDND1Q9NY35 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
CLDND1Q9NY35 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC23.85■■□□□ 1.41
CLDND1Q9NY35 NDEL1-202ENST00000380025 2181 ntTSL 5 BASIC23.85■■□□□ 1.41
CLDND1Q9NY35 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
CLDND1Q9NY35 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC23.85■■□□□ 1.41
CLDND1Q9NY35 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC23.85■■□□□ 1.41
CLDND1Q9NY35 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC23.85■■□□□ 1.41
CLDND1Q9NY35 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC23.85■■□□□ 1.41
CLDND1Q9NY35 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC23.85■■□□□ 1.41
CLDND1Q9NY35 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC23.85■■□□□ 1.41
CLDND1Q9NY35 ELOC-206ENST00000520242 1573 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
CLDND1Q9NY35 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC23.85■■□□□ 1.41
CLDND1Q9NY35 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
CLDND1Q9NY35 TMEM55B-201ENST00000250489 1961 ntAPPRIS P3 TSL 1 (best) BASIC23.85■■□□□ 1.41
CLDND1Q9NY35 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC23.84■■□□□ 1.41
CLDND1Q9NY35 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
CLDND1Q9NY35 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC23.84■■□□□ 1.41
CLDND1Q9NY35 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC23.84■■□□□ 1.41
CLDND1Q9NY35 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
CLDND1Q9NY35 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC23.84■■□□□ 1.41
CLDND1Q9NY35 AC080038.1-201ENST00000611274 1154 ntBASIC23.84■■□□□ 1.41
CLDND1Q9NY35 TMEM104-205ENST00000582773 1740 ntTSL 2 BASIC23.84■■□□□ 1.41
CLDND1Q9NY35 RRAS2-201ENST00000256196 1516 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
CLDND1Q9NY35 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC23.84■■□□□ 1.41
CLDND1Q9NY35 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC23.84■■□□□ 1.41
CLDND1Q9NY35 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC23.83■■□□□ 1.41
CLDND1Q9NY35 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC23.83■■□□□ 1.41
CLDND1Q9NY35 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
CLDND1Q9NY35 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
CLDND1Q9NY35 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC23.83■■□□□ 1.41
CLDND1Q9NY35 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC23.83■■□□□ 1.41
CLDND1Q9NY35 GXYLT1P5-201ENST00000614548 1189 ntBASIC23.83■■□□□ 1.41
CLDND1Q9NY35 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC23.83■■□□□ 1.41
CLDND1Q9NY35 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
CLDND1Q9NY35 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
CLDND1Q9NY35 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.4
CLDND1Q9NY35 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC23.83■■□□□ 1.4
CLDND1Q9NY35 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC23.83■■□□□ 1.4
CLDND1Q9NY35 USF2-207ENST00000595068 1612 ntTSL 5 BASIC23.82■■□□□ 1.4
CLDND1Q9NY35 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC23.82■■□□□ 1.4
CLDND1Q9NY35 SCCPDH-201ENST00000366510 2503 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
CLDND1Q9NY35 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
CLDND1Q9NY35 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
CLDND1Q9NY35 TMEM9-201ENST00000367330 1959 ntAPPRIS P3 TSL 1 (best) BASIC23.82■■□□□ 1.4
CLDND1Q9NY35 MAGI2-211ENST00000535697 6146 ntTSL 5 BASIC23.81■■□□□ 1.4
CLDND1Q9NY35 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
CLDND1Q9NY35 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC23.81■■□□□ 1.4
CLDND1Q9NY35 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC23.81■■□□□ 1.4
CLDND1Q9NY35 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC23.81■■□□□ 1.4
CLDND1Q9NY35 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
CLDND1Q9NY35 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC23.81■■□□□ 1.4
CLDND1Q9NY35 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC23.81■■□□□ 1.4
CLDND1Q9NY35 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
CLDND1Q9NY35 SLC25A6-201ENST00000381401 2062 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
CLDND1Q9NY35 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
CLDND1Q9NY35 TALDO1-201ENST00000319006 1346 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
CLDND1Q9NY35 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC23.79■■□□□ 1.4
CLDND1Q9NY35 AC141586.4-201ENST00000624558 1573 ntBASIC23.79■■□□□ 1.4
CLDND1Q9NY35 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC23.79■■□□□ 1.4
CLDND1Q9NY35 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC23.79■■□□□ 1.4
CLDND1Q9NY35 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
CLDND1Q9NY35 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC23.79■■□□□ 1.4
CLDND1Q9NY35 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC23.79■■□□□ 1.4
CLDND1Q9NY35 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
CLDND1Q9NY35 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
CLDND1Q9NY35 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
CLDND1Q9NY35 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC23.78■■□□□ 1.4
CLDND1Q9NY35 E2F5-202ENST00000416274 1728 ntAPPRIS P4 TSL 1 (best) BASIC23.78■■□□□ 1.4
CLDND1Q9NY35 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC23.77■■□□□ 1.4
CLDND1Q9NY35 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC23.77■■□□□ 1.4
CLDND1Q9NY35 ZIC2-201ENST00000376335 2983 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
CLDND1Q9NY35 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
CLDND1Q9NY35 NT5C3AP1-201ENST00000394500 1012 ntBASIC23.77■■□□□ 1.4
CLDND1Q9NY35 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
CLDND1Q9NY35 PGR-AS1-202ENST00000632820 1545 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
CLDND1Q9NY35 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC23.77■■□□□ 1.4
CLDND1Q9NY35 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC23.76■■□□□ 1.39
CLDND1Q9NY35 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
CLDND1Q9NY35 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC23.76■■□□□ 1.39
CLDND1Q9NY35 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC23.76■■□□□ 1.39
CLDND1Q9NY35 MROH6-210ENST00000533679 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC23.76■■□□□ 1.39
CLDND1Q9NY35 SLC6A10P-202ENST00000431994 2058 ntBASIC23.75■■□□□ 1.39
CLDND1Q9NY35 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC23.75■■□□□ 1.39
CLDND1Q9NY35 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC23.75■■□□□ 1.39
CLDND1Q9NY35 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC23.75■■□□□ 1.39
CLDND1Q9NY35 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
CLDND1Q9NY35 PKMYT1-211ENST00000573944 1891 ntAPPRIS P1 TSL 5 BASIC23.75■■□□□ 1.39
CLDND1Q9NY35 AC016769.1-201ENST00000409132 1010 ntBASIC23.75■■□□□ 1.39
CLDND1Q9NY35 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC23.75■■□□□ 1.39
CLDND1Q9NY35 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
CLDND1Q9NY35 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC23.75■■□□□ 1.39
CLDND1Q9NY35 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC23.75■■□□□ 1.39
CLDND1Q9NY35 KRT72-202ENST00000354310 1764 ntTSL 2 BASIC23.75■■□□□ 1.39
Retrieved 100 of 98,524 protein–RNA pairs in 20.8 ms