Protein–RNA interactions for Protein: Q9H9A6

LRRC40, Leucine-rich repeat-containing protein 40, humanhuman

Predictions only

Length 602 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC40Q9H9A6 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC22.92■■□□□ 1.26
LRRC40Q9H9A6 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC22.92■■□□□ 1.26
LRRC40Q9H9A6 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC22.92■■□□□ 1.26
LRRC40Q9H9A6 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC22.92■■□□□ 1.26
LRRC40Q9H9A6 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC22.92■■□□□ 1.26
LRRC40Q9H9A6 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC22.92■■□□□ 1.26
LRRC40Q9H9A6 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC22.92■■□□□ 1.26
LRRC40Q9H9A6 ALG1L9P-201ENST00000508969 2165 ntTSL 1 (best) BASIC22.92■■□□□ 1.26
LRRC40Q9H9A6 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC22.92■■□□□ 1.26
LRRC40Q9H9A6 RNF146-205ENST00000477776 762 ntTSL 3 BASIC22.92■■□□□ 1.26
LRRC40Q9H9A6 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC22.92■■□□□ 1.26
LRRC40Q9H9A6 IRF2BP1-201ENST00000302165 2564 ntAPPRIS P1 BASIC22.92■■□□□ 1.26
LRRC40Q9H9A6 DUSP8P3-201ENST00000399571 1760 ntBASIC22.91■■□□□ 1.26
LRRC40Q9H9A6 C9orf163-202ENST00000624034 2573 ntBASIC22.91■■□□□ 1.26
LRRC40Q9H9A6 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC22.91■■□□□ 1.26
LRRC40Q9H9A6 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC22.9■■□□□ 1.26
LRRC40Q9H9A6 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC22.9■■□□□ 1.26
LRRC40Q9H9A6 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
LRRC40Q9H9A6 USF2-207ENST00000595068 1612 ntTSL 5 BASIC22.9■■□□□ 1.26
LRRC40Q9H9A6 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
LRRC40Q9H9A6 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
LRRC40Q9H9A6 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC22.9■■□□□ 1.26
LRRC40Q9H9A6 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC22.9■■□□□ 1.26
LRRC40Q9H9A6 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC22.9■■□□□ 1.26
LRRC40Q9H9A6 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
LRRC40Q9H9A6 SRXN1-201ENST00000381962 2698 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
LRRC40Q9H9A6 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC22.9■■□□□ 1.26
LRRC40Q9H9A6 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC22.9■■□□□ 1.26
LRRC40Q9H9A6 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC22.9■■□□□ 1.26
LRRC40Q9H9A6 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC22.9■■□□□ 1.26
LRRC40Q9H9A6 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC22.89■■□□□ 1.26
LRRC40Q9H9A6 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC22.89■■□□□ 1.26
LRRC40Q9H9A6 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC22.89■■□□□ 1.26
LRRC40Q9H9A6 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC22.89■■□□□ 1.25
LRRC40Q9H9A6 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC22.89■■□□□ 1.25
LRRC40Q9H9A6 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC22.89■■□□□ 1.25
LRRC40Q9H9A6 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC22.89■■□□□ 1.25
LRRC40Q9H9A6 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC22.89■■□□□ 1.25
LRRC40Q9H9A6 CLTA-210ENST00000540080 989 ntTSL 2 BASIC22.89■■□□□ 1.25
LRRC40Q9H9A6 Z92544.1-202ENST00000571933 1220 ntBASIC22.89■■□□□ 1.25
LRRC40Q9H9A6 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC22.89■■□□□ 1.25
LRRC40Q9H9A6 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC22.89■■□□□ 1.25
LRRC40Q9H9A6 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.25
LRRC40Q9H9A6 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC22.89■■□□□ 1.25
LRRC40Q9H9A6 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.25
LRRC40Q9H9A6 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC22.89■■□□□ 1.25
LRRC40Q9H9A6 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC22.89■■□□□ 1.25
LRRC40Q9H9A6 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC22.89■■□□□ 1.25
LRRC40Q9H9A6 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC22.89■■□□□ 1.25
LRRC40Q9H9A6 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC22.89■■□□□ 1.25
LRRC40Q9H9A6 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
LRRC40Q9H9A6 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC22.88■■□□□ 1.25
LRRC40Q9H9A6 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
LRRC40Q9H9A6 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC22.88■■□□□ 1.25
LRRC40Q9H9A6 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC22.88■■□□□ 1.25
LRRC40Q9H9A6 KRT125P-201ENST00000546827 989 ntBASIC22.88■■□□□ 1.25
LRRC40Q9H9A6 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC22.88■■□□□ 1.25
LRRC40Q9H9A6 MIR6722-201ENST00000617286 78 ntBASIC22.88■■□□□ 1.25
LRRC40Q9H9A6 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC22.88■■□□□ 1.25
LRRC40Q9H9A6 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
LRRC40Q9H9A6 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC22.87■■□□□ 1.25
LRRC40Q9H9A6 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC22.87■■□□□ 1.25
LRRC40Q9H9A6 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
LRRC40Q9H9A6 LHX2-201ENST00000373615 2554 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
LRRC40Q9H9A6 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC22.87■■□□□ 1.25
LRRC40Q9H9A6 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC22.87■■□□□ 1.25
LRRC40Q9H9A6 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC22.87■■□□□ 1.25
LRRC40Q9H9A6 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC22.87■■□□□ 1.25
LRRC40Q9H9A6 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC22.87■■□□□ 1.25
LRRC40Q9H9A6 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC22.87■■□□□ 1.25
LRRC40Q9H9A6 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
LRRC40Q9H9A6 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC22.87■■□□□ 1.25
LRRC40Q9H9A6 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC22.87■■□□□ 1.25
LRRC40Q9H9A6 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC22.87■■□□□ 1.25
LRRC40Q9H9A6 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC22.86■■□□□ 1.25
LRRC40Q9H9A6 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC22.86■■□□□ 1.25
LRRC40Q9H9A6 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC22.86■■□□□ 1.25
LRRC40Q9H9A6 DONSON-201ENST00000303071 2170 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
LRRC40Q9H9A6 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC22.86■■□□□ 1.25
LRRC40Q9H9A6 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
LRRC40Q9H9A6 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
LRRC40Q9H9A6 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
LRRC40Q9H9A6 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC22.86■■□□□ 1.25
LRRC40Q9H9A6 LRRC73-201ENST00000372441 2121 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
LRRC40Q9H9A6 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC22.86■■□□□ 1.25
LRRC40Q9H9A6 AC011448.1-201ENST00000555938 1100 ntAPPRIS P1 TSL 2 BASIC22.86■■□□□ 1.25
LRRC40Q9H9A6 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
LRRC40Q9H9A6 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC22.86■■□□□ 1.25
LRRC40Q9H9A6 C3orf80-201ENST00000326474 2718 ntAPPRIS P1 BASIC22.86■■□□□ 1.25
LRRC40Q9H9A6 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
LRRC40Q9H9A6 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC22.85■■□□□ 1.25
LRRC40Q9H9A6 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC22.85■■□□□ 1.25
LRRC40Q9H9A6 ADGRA2-202ENST00000412232 5651 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
LRRC40Q9H9A6 CTAG1B-201ENST00000328435 748 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
LRRC40Q9H9A6 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC22.85■■□□□ 1.25
LRRC40Q9H9A6 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC22.85■■□□□ 1.25
LRRC40Q9H9A6 CTAG1A-202ENST00000599837 748 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
LRRC40Q9H9A6 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC22.85■■□□□ 1.25
LRRC40Q9H9A6 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC22.85■■□□□ 1.25
LRRC40Q9H9A6 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC22.85■■□□□ 1.25
Retrieved 100 of 98,524 protein–RNA pairs in 30.3 ms