Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC20.06■□□□□ 0.8
COL12A1Q99715 AL138781.1-201ENST00000566567 1274 ntBASIC20.06■□□□□ 0.8
COL12A1Q99715 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
COL12A1Q99715 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC20.05■□□□□ 0.8
COL12A1Q99715 GABRA5-203ENST00000400081 2761 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
COL12A1Q99715 EVA1C-201ENST00000300255 1998 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
COL12A1Q99715 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC20.05■□□□□ 0.8
COL12A1Q99715 WWOX-218ENST00000627394 894 ntTSL 5 BASIC20.05■□□□□ 0.8
COL12A1Q99715 SLC16A3-214ENST00000582743 2002 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
COL12A1Q99715 GNB2-203ENST00000393926 1641 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
COL12A1Q99715 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
COL12A1Q99715 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
COL12A1Q99715 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
COL12A1Q99715 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
COL12A1Q99715 SERINC5-203ENST00000509193 1441 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
COL12A1Q99715 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC20.04■□□□□ 0.8
COL12A1Q99715 AL354811.1-201ENST00000610286 706 ntBASIC20.04■□□□□ 0.8
COL12A1Q99715 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
COL12A1Q99715 HSCB-202ENST00000398941 955 ntTSL 2 BASIC20.04■□□□□ 0.8
COL12A1Q99715 APTR-205ENST00000447009 902 ntTSL 2 BASIC20.04■□□□□ 0.8
COL12A1Q99715 FUT11-202ENST00000394790 2175 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
COL12A1Q99715 RTN2-201ENST00000245923 2293 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
COL12A1Q99715 FBXL6-202ENST00000455319 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
COL12A1Q99715 AC096887.2-201ENST00000623443 1957 ntBASIC20.04■□□□□ 0.8
COL12A1Q99715 KAT8-202ENST00000448516 1789 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
COL12A1Q99715 RPS2P52-201ENST00000469610 820 ntBASIC20.04■□□□□ 0.8
COL12A1Q99715 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC20.04■□□□□ 0.8
COL12A1Q99715 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC20.04■□□□□ 0.8
COL12A1Q99715 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
COL12A1Q99715 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC20.03■□□□□ 0.8
COL12A1Q99715 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC20.03■□□□□ 0.8
COL12A1Q99715 GTSE1-AS1-202ENST00000623117 1518 ntBASIC20.03■□□□□ 0.8
COL12A1Q99715 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC20.03■□□□□ 0.8
COL12A1Q99715 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
COL12A1Q99715 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC20.03■□□□□ 0.8
COL12A1Q99715 SHOX2-201ENST00000389589 2072 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.8
COL12A1Q99715 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
COL12A1Q99715 AP005435.1-201ENST00000529293 1178 ntBASIC20.02■□□□□ 0.8
COL12A1Q99715 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
COL12A1Q99715 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC20.02■□□□□ 0.8
COL12A1Q99715 WFDC1-201ENST00000219454 1534 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
COL12A1Q99715 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC20.02■□□□□ 0.8
COL12A1Q99715 THRA-204ENST00000546243 1909 ntAPPRIS P1 TSL 2 BASIC20.02■□□□□ 0.8
COL12A1Q99715 RDH14-201ENST00000381249 1587 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
COL12A1Q99715 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC20.01■□□□□ 0.79
COL12A1Q99715 IFNL4-201ENST00000606380 1637 ntAPPRIS P5 TSL 1 (best) BASIC20.01■□□□□ 0.79
COL12A1Q99715 CUEDC1-201ENST00000360238 2193 ntAPPRIS P1 TSL 2 BASIC20.01■□□□□ 0.79
COL12A1Q99715 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
COL12A1Q99715 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC20.01■□□□□ 0.79
COL12A1Q99715 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
COL12A1Q99715 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC20.01■□□□□ 0.79
COL12A1Q99715 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC20.01■□□□□ 0.79
COL12A1Q99715 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
COL12A1Q99715 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
COL12A1Q99715 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
COL12A1Q99715 ST7-205ENST00000393446 2114 ntTSL 5 BASIC20.01■□□□□ 0.79
COL12A1Q99715 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
COL12A1Q99715 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC20.01■□□□□ 0.79
COL12A1Q99715 MIR572-201ENST00000384983 95 ntBASIC20.01■□□□□ 0.79
COL12A1Q99715 AC098590.1-201ENST00000468126 897 ntBASIC20.01■□□□□ 0.79
COL12A1Q99715 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC20■□□□□ 0.79
COL12A1Q99715 VGF-203ENST00000611537 1622 ntTSL 5 BASIC20■□□□□ 0.79
COL12A1Q99715 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC20■□□□□ 0.79
COL12A1Q99715 PCSK6-201ENST00000331826 2309 ntTSL 5 BASIC20■□□□□ 0.79
COL12A1Q99715 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
COL12A1Q99715 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC20■□□□□ 0.79
COL12A1Q99715 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC20■□□□□ 0.79
COL12A1Q99715 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC20■□□□□ 0.79
COL12A1Q99715 FSD1-204ENST00000597590 1634 ntTSL 5 BASIC20■□□□□ 0.79
COL12A1Q99715 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC20■□□□□ 0.79
COL12A1Q99715 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
COL12A1Q99715 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC20■□□□□ 0.79
COL12A1Q99715 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC20■□□□□ 0.79
COL12A1Q99715 LURAP1L-201ENST00000319264 1753 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
COL12A1Q99715 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC20■□□□□ 0.79
COL12A1Q99715 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
COL12A1Q99715 AC069152.1-201ENST00000438030 544 ntBASIC19.99■□□□□ 0.79
COL12A1Q99715 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
COL12A1Q99715 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC19.99■□□□□ 0.79
COL12A1Q99715 TST-202ENST00000403892 1797 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
COL12A1Q99715 C11orf80-218ENST00000540737 1786 ntAPPRIS ALT2 TSL 2 BASIC19.99■□□□□ 0.79
COL12A1Q99715 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
COL12A1Q99715 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC19.99■□□□□ 0.79
COL12A1Q99715 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC19.99■□□□□ 0.79
COL12A1Q99715 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC19.99■□□□□ 0.79
COL12A1Q99715 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC19.99■□□□□ 0.79
COL12A1Q99715 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
COL12A1Q99715 C14orf80-204ENST00000392522 1630 ntAPPRIS P4 TSL 5 BASIC19.99■□□□□ 0.79
COL12A1Q99715 P2RX4-203ENST00000359949 1836 ntTSL 5 BASIC19.99■□□□□ 0.79
COL12A1Q99715 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC19.99■□□□□ 0.79
COL12A1Q99715 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
COL12A1Q99715 GALNS-213ENST00000569433 723 ntTSL 3 BASIC19.99■□□□□ 0.79
COL12A1Q99715 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC19.98■□□□□ 0.79
COL12A1Q99715 C11orf80-204ENST00000525908 2135 ntAPPRIS P3 TSL 2 BASIC19.98■□□□□ 0.79
COL12A1Q99715 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
COL12A1Q99715 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC19.98■□□□□ 0.79
COL12A1Q99715 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
COL12A1Q99715 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC19.98■□□□□ 0.79
COL12A1Q99715 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC19.98■□□□□ 0.79
COL12A1Q99715 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC19.98■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 17.3 ms