Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
LINC00477Q96M19 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC16.87■□□□□ 0.29
LINC00477Q96M19 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC16.87■□□□□ 0.29
LINC00477Q96M19 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC16.87■□□□□ 0.29
LINC00477Q96M19 THA1P-201ENST00000590384 1145 ntBASIC16.87■□□□□ 0.29
LINC00477Q96M19 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
LINC00477Q96M19 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
LINC00477Q96M19 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
LINC00477Q96M19 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
LINC00477Q96M19 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
LINC00477Q96M19 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
LINC00477Q96M19 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC16.87■□□□□ 0.29
LINC00477Q96M19 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
LINC00477Q96M19 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
LINC00477Q96M19 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
LINC00477Q96M19 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
LINC00477Q96M19 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC16.86■□□□□ 0.29
LINC00477Q96M19 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
LINC00477Q96M19 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
LINC00477Q96M19 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
LINC00477Q96M19 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
LINC00477Q96M19 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC16.86■□□□□ 0.29
LINC00477Q96M19 AC064853.2-201ENST00000641246 144 ntAPPRIS P1 BASIC16.86■□□□□ 0.29
LINC00477Q96M19 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC16.86■□□□□ 0.29
LINC00477Q96M19 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
LINC00477Q96M19 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
LINC00477Q96M19 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
LINC00477Q96M19 AL117328.2-201ENST00000624617 1940 ntBASIC16.86■□□□□ 0.29
LINC00477Q96M19 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC16.86■□□□□ 0.29
LINC00477Q96M19 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC16.86■□□□□ 0.29
LINC00477Q96M19 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC16.86■□□□□ 0.29
LINC00477Q96M19 GALC-202ENST00000393568 2054 ntTSL 2 BASIC16.85■□□□□ 0.29
LINC00477Q96M19 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
LINC00477Q96M19 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
LINC00477Q96M19 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
LINC00477Q96M19 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
LINC00477Q96M19 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC16.85■□□□□ 0.29
LINC00477Q96M19 COPRS-201ENST00000302362 968 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
LINC00477Q96M19 TNFRSF12A-201ENST00000326577 1033 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
LINC00477Q96M19 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC16.85■□□□□ 0.29
LINC00477Q96M19 ATP5G2P3-201ENST00000429083 425 ntBASIC16.85■□□□□ 0.29
LINC00477Q96M19 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC16.85■□□□□ 0.29
LINC00477Q96M19 KLF16-204ENST00000617223 1133 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
LINC00477Q96M19 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
LINC00477Q96M19 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
LINC00477Q96M19 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
LINC00477Q96M19 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC16.84■□□□□ 0.29
LINC00477Q96M19 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC16.84■□□□□ 0.29
LINC00477Q96M19 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
LINC00477Q96M19 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
LINC00477Q96M19 AKT1-201ENST00000349310 2866 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
LINC00477Q96M19 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
LINC00477Q96M19 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
LINC00477Q96M19 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
LINC00477Q96M19 AC004987.1-201ENST00000428627 508 ntBASIC16.84■□□□□ 0.29
LINC00477Q96M19 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC16.84■□□□□ 0.29
LINC00477Q96M19 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC16.84■□□□□ 0.29
LINC00477Q96M19 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
LINC00477Q96M19 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
LINC00477Q96M19 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
LINC00477Q96M19 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
LINC00477Q96M19 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC16.84■□□□□ 0.29
LINC00477Q96M19 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC16.84■□□□□ 0.29
LINC00477Q96M19 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
LINC00477Q96M19 H19-210ENST00000439725 1929 ntTSL 2 BASIC16.84■□□□□ 0.29
LINC00477Q96M19 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC16.84■□□□□ 0.29
LINC00477Q96M19 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC16.84■□□□□ 0.29
LINC00477Q96M19 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
LINC00477Q96M19 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC16.83■□□□□ 0.28
LINC00477Q96M19 VSTM2A-202ENST00000402613 1076 ntTSL 2 BASIC16.83■□□□□ 0.28
LINC00477Q96M19 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
LINC00477Q96M19 GPRC5B-202ENST00000535671 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
LINC00477Q96M19 MIR4281-201ENST00000580852 62 ntBASIC16.83■□□□□ 0.28
LINC00477Q96M19 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC16.83■□□□□ 0.28
LINC00477Q96M19 AC233723.2-201ENST00000623798 2106 ntBASIC16.83■□□□□ 0.28
LINC00477Q96M19 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC16.83■□□□□ 0.28
LINC00477Q96M19 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
LINC00477Q96M19 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC16.82■□□□□ 0.28
LINC00477Q96M19 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
LINC00477Q96M19 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC16.82■□□□□ 0.28
LINC00477Q96M19 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
LINC00477Q96M19 AF131216.4-201ENST00000638924 1588 ntBASIC16.82■□□□□ 0.28
LINC00477Q96M19 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC16.82■□□□□ 0.28
LINC00477Q96M19 SRXN1-201ENST00000381962 2698 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
LINC00477Q96M19 AC004448.1-201ENST00000458332 883 ntBASIC16.82■□□□□ 0.28
LINC00477Q96M19 AC148477.1-201ENST00000537720 476 ntTSL 3 BASIC16.82■□□□□ 0.28
LINC00477Q96M19 LSM7-203ENST00000585409 512 ntTSL 2 BASIC16.82■□□□□ 0.28
LINC00477Q96M19 RAB4B-203ENST00000594800 1173 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
LINC00477Q96M19 NRG2-201ENST00000289409 2535 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
LINC00477Q96M19 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
LINC00477Q96M19 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
LINC00477Q96M19 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
LINC00477Q96M19 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
LINC00477Q96M19 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC16.81■□□□□ 0.28
LINC00477Q96M19 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC16.81■□□□□ 0.28
LINC00477Q96M19 ADSS-201ENST00000366535 2780 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
LINC00477Q96M19 FAM107B-211ENST00000468747 2633 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
LINC00477Q96M19 TSPY13P-201ENST00000338964 914 ntBASIC16.81■□□□□ 0.28
LINC00477Q96M19 PYY2-202ENST00000441253 1076 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
LINC00477Q96M19 TBX2-AS1-203ENST00000590421 861 ntTSL 2 BASIC16.81■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 21.3 ms