Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC30.08■■■□□ 2.41
USHBP1Q8N6Y0 GDF1-201ENST00000247005 2517 ntAPPRIS P1 TSL 1 (best) BASIC30.07■■■□□ 2.41
USHBP1Q8N6Y0 CERS1-204ENST00000623882 2517 ntTSL 1 (best) BASIC30.07■■■□□ 2.41
USHBP1Q8N6Y0 CDC16-204ENST00000360383 2211 ntAPPRIS P3 TSL 5 BASIC30.07■■■□□ 2.4
USHBP1Q8N6Y0 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC30.07■■■□□ 2.4
USHBP1Q8N6Y0 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC30.07■■■□□ 2.4
USHBP1Q8N6Y0 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC30.07■■■□□ 2.4
USHBP1Q8N6Y0 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC30.06■■■□□ 2.4
USHBP1Q8N6Y0 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC30.06■■■□□ 2.4
USHBP1Q8N6Y0 MPST-208ENST00000628507 698 ntTSL 5 BASIC30.06■■■□□ 2.4
USHBP1Q8N6Y0 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC30.06■■■□□ 2.4
USHBP1Q8N6Y0 E2F5-203ENST00000418930 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC30.06■■■□□ 2.4
USHBP1Q8N6Y0 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC30.06■■■□□ 2.4
USHBP1Q8N6Y0 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC30.06■■■□□ 2.4
USHBP1Q8N6Y0 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC30.05■■■□□ 2.4
USHBP1Q8N6Y0 AL161729.1-201ENST00000604104 1402 ntBASIC30.05■■■□□ 2.4
USHBP1Q8N6Y0 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC30.05■■■□□ 2.4
USHBP1Q8N6Y0 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC30.05■■■□□ 2.4
USHBP1Q8N6Y0 SLC47A1P1-202ENST00000449666 945 ntBASIC30.05■■■□□ 2.4
USHBP1Q8N6Y0 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC30.05■■■□□ 2.4
USHBP1Q8N6Y0 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC30.05■■■□□ 2.4
USHBP1Q8N6Y0 AL031602.1-201ENST00000633169 911 ntBASIC30.05■■■□□ 2.4
USHBP1Q8N6Y0 HNRNPL-201ENST00000221419 2471 ntAPPRIS P1 TSL 1 (best) BASIC30.05■■■□□ 2.4
USHBP1Q8N6Y0 BIN1-201ENST00000259238 2338 ntTSL 1 (best) BASIC30.05■■■□□ 2.4
USHBP1Q8N6Y0 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC30.05■■■□□ 2.4
USHBP1Q8N6Y0 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC30.05■■■□□ 2.4
USHBP1Q8N6Y0 HABP4-202ENST00000375251 2304 ntTSL 1 (best) BASIC30.04■■■□□ 2.4
USHBP1Q8N6Y0 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC30.04■■■□□ 2.4
USHBP1Q8N6Y0 ASB1-202ENST00000409297 878 ntTSL 5 BASIC30.04■■■□□ 2.4
USHBP1Q8N6Y0 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC30.04■■■□□ 2.4
USHBP1Q8N6Y0 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC30.04■■■□□ 2.4
USHBP1Q8N6Y0 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC30.04■■■□□ 2.4
USHBP1Q8N6Y0 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC30.03■■■□□ 2.4
USHBP1Q8N6Y0 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC30.02■■■□□ 2.4
USHBP1Q8N6Y0 CAPZB-203ENST00000375142 1686 ntAPPRIS ALT1 TSL 5 BASIC30.02■■■□□ 2.4
USHBP1Q8N6Y0 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC30.02■■■□□ 2.4
USHBP1Q8N6Y0 AC126544.1-201ENST00000580842 1059 ntBASIC30.02■■■□□ 2.4
USHBP1Q8N6Y0 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC30.02■■■□□ 2.4
USHBP1Q8N6Y0 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC30.02■■■□□ 2.4
USHBP1Q8N6Y0 AGAP1-202ENST00000336665 5427 ntAPPRIS P3 TSL 1 (best) BASIC30.01■■■□□ 2.4
USHBP1Q8N6Y0 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC30.01■■■□□ 2.4
USHBP1Q8N6Y0 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC30.01■■■□□ 2.4
USHBP1Q8N6Y0 SHF-207ENST00000560540 2062 ntTSL 5 BASIC30.01■■■□□ 2.39
USHBP1Q8N6Y0 HACD1-201ENST00000326961 773 ntTSL 2 BASIC30.01■■■□□ 2.39
USHBP1Q8N6Y0 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC30.01■■■□□ 2.39
USHBP1Q8N6Y0 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC30.01■■■□□ 2.39
USHBP1Q8N6Y0 GLI3-203ENST00000437480 451 ntTSL 2 BASIC30.01■■■□□ 2.39
USHBP1Q8N6Y0 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC30.01■■■□□ 2.39
USHBP1Q8N6Y0 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC30.01■■■□□ 2.39
USHBP1Q8N6Y0 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC30.01■■■□□ 2.39
USHBP1Q8N6Y0 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC30■■■□□ 2.39
USHBP1Q8N6Y0 TSPY26P-201ENST00000476365 1326 ntBASIC30■■■□□ 2.39
USHBP1Q8N6Y0 KCNG1-201ENST00000371571 2211 ntAPPRIS P1 TSL 1 (best) BASIC30■■■□□ 2.39
USHBP1Q8N6Y0 C4orf19-202ENST00000381980 1943 ntAPPRIS P1 TSL 1 (best) BASIC30■■■□□ 2.39
USHBP1Q8N6Y0 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC30■■■□□ 2.39
USHBP1Q8N6Y0 PCYT2-202ENST00000538721 1765 ntAPPRIS P1 TSL 1 (best) BASIC30■■■□□ 2.39
USHBP1Q8N6Y0 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC29.99■■■□□ 2.39
USHBP1Q8N6Y0 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC29.98■■■□□ 2.39
USHBP1Q8N6Y0 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC29.98■■■□□ 2.39
USHBP1Q8N6Y0 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC29.98■■■□□ 2.39
USHBP1Q8N6Y0 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC29.98■■■□□ 2.39
USHBP1Q8N6Y0 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC29.98■■■□□ 2.39
USHBP1Q8N6Y0 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC29.98■■■□□ 2.39
USHBP1Q8N6Y0 NFKBIB-204ENST00000572515 1929 ntTSL 1 (best) BASIC29.98■■■□□ 2.39
USHBP1Q8N6Y0 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC29.98■■■□□ 2.39
USHBP1Q8N6Y0 AC141586.4-201ENST00000624558 1573 ntBASIC29.98■■■□□ 2.39
USHBP1Q8N6Y0 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC29.98■■■□□ 2.39
USHBP1Q8N6Y0 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC29.97■■■□□ 2.39
USHBP1Q8N6Y0 ADSSL1-202ENST00000332972 1969 ntTSL 1 (best) BASIC29.97■■■□□ 2.39
USHBP1Q8N6Y0 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC29.97■■■□□ 2.39
USHBP1Q8N6Y0 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC29.97■■■□□ 2.39
USHBP1Q8N6Y0 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC29.97■■■□□ 2.39
USHBP1Q8N6Y0 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC29.97■■■□□ 2.39
USHBP1Q8N6Y0 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC29.97■■■□□ 2.39
USHBP1Q8N6Y0 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC29.97■■■□□ 2.39
USHBP1Q8N6Y0 ARSB-206ENST00000565165 1772 ntTSL 1 (best) BASIC29.97■■■□□ 2.39
USHBP1Q8N6Y0 HDGFL2-210ENST00000621835 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC29.97■■■□□ 2.39
USHBP1Q8N6Y0 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC29.96■■■□□ 2.39
USHBP1Q8N6Y0 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC29.96■■■□□ 2.39
USHBP1Q8N6Y0 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC29.96■■■□□ 2.39
USHBP1Q8N6Y0 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC29.96■■■□□ 2.39
USHBP1Q8N6Y0 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC29.96■■■□□ 2.39
USHBP1Q8N6Y0 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC29.96■■■□□ 2.39
USHBP1Q8N6Y0 RCAN1-201ENST00000313806 2490 ntTSL 1 (best) BASIC29.96■■■□□ 2.39
USHBP1Q8N6Y0 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC29.96■■■□□ 2.39
USHBP1Q8N6Y0 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC29.95■■■□□ 2.39
USHBP1Q8N6Y0 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC29.95■■■□□ 2.39
USHBP1Q8N6Y0 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC29.95■■■□□ 2.39
USHBP1Q8N6Y0 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC29.95■■■□□ 2.39
USHBP1Q8N6Y0 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC29.95■■■□□ 2.39
USHBP1Q8N6Y0 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC29.95■■■□□ 2.39
USHBP1Q8N6Y0 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC29.95■■■□□ 2.39
USHBP1Q8N6Y0 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC29.95■■■□□ 2.39
USHBP1Q8N6Y0 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC29.95■■■□□ 2.38
USHBP1Q8N6Y0 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC29.95■■■□□ 2.38
USHBP1Q8N6Y0 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC29.94■■■□□ 2.38
USHBP1Q8N6Y0 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC29.94■■■□□ 2.38
USHBP1Q8N6Y0 IKBKGP1-201ENST00000612193 1073 ntBASIC29.94■■■□□ 2.38
USHBP1Q8N6Y0 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC29.94■■■□□ 2.38
USHBP1Q8N6Y0 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC29.94■■■□□ 2.38
Retrieved 100 of 98,524 protein–RNA pairs in 35.2 ms