Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC20.87■□□□□ 0.93
DEPDC4Q8N2C3 AC127496.7-201ENST00000625110 1798 ntBASIC20.87■□□□□ 0.93
DEPDC4Q8N2C3 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
DEPDC4Q8N2C3 GGH-201ENST00000260118 1607 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
DEPDC4Q8N2C3 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
DEPDC4Q8N2C3 LINC00526-201ENST00000581067 1875 ntBASIC20.86■□□□□ 0.93
DEPDC4Q8N2C3 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC20.86■□□□□ 0.93
DEPDC4Q8N2C3 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
DEPDC4Q8N2C3 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC20.86■□□□□ 0.93
DEPDC4Q8N2C3 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC20.86■□□□□ 0.93
DEPDC4Q8N2C3 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC20.86■□□□□ 0.93
DEPDC4Q8N2C3 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC20.86■□□□□ 0.93
DEPDC4Q8N2C3 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC20.86■□□□□ 0.93
DEPDC4Q8N2C3 CTF1-201ENST00000279804 1664 ntAPPRIS P3 TSL 1 (best) BASIC20.86■□□□□ 0.93
DEPDC4Q8N2C3 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
DEPDC4Q8N2C3 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC20.85■□□□□ 0.93
DEPDC4Q8N2C3 C1orf229-201ENST00000623686 2258 ntBASIC20.85■□□□□ 0.93
DEPDC4Q8N2C3 RRAD-201ENST00000299759 1569 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
DEPDC4Q8N2C3 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
DEPDC4Q8N2C3 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC20.85■□□□□ 0.93
DEPDC4Q8N2C3 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC20.85■□□□□ 0.93
DEPDC4Q8N2C3 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
DEPDC4Q8N2C3 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
DEPDC4Q8N2C3 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC20.85■□□□□ 0.93
DEPDC4Q8N2C3 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
DEPDC4Q8N2C3 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
DEPDC4Q8N2C3 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
DEPDC4Q8N2C3 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
DEPDC4Q8N2C3 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC20.85■□□□□ 0.93
DEPDC4Q8N2C3 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
DEPDC4Q8N2C3 SLC39A2-201ENST00000298681 1379 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
DEPDC4Q8N2C3 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
DEPDC4Q8N2C3 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC20.84■□□□□ 0.93
DEPDC4Q8N2C3 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
DEPDC4Q8N2C3 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC20.84■□□□□ 0.93
DEPDC4Q8N2C3 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
DEPDC4Q8N2C3 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
DEPDC4Q8N2C3 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC20.84■□□□□ 0.93
DEPDC4Q8N2C3 MDK-206ENST00000407067 1026 ntAPPRIS P2 TSL 1 (best) BASIC20.84■□□□□ 0.93
DEPDC4Q8N2C3 CASTOR2-201ENST00000616305 1257 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
DEPDC4Q8N2C3 GUSBP5-202ENST00000510805 1989 ntBASIC20.84■□□□□ 0.93
DEPDC4Q8N2C3 KRT8P33-201ENST00000508125 1423 ntBASIC20.84■□□□□ 0.93
DEPDC4Q8N2C3 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC20.84■□□□□ 0.93
DEPDC4Q8N2C3 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC20.84■□□□□ 0.93
DEPDC4Q8N2C3 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
DEPDC4Q8N2C3 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC20.84■□□□□ 0.93
DEPDC4Q8N2C3 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC20.83■□□□□ 0.93
DEPDC4Q8N2C3 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC20.83■□□□□ 0.93
DEPDC4Q8N2C3 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
DEPDC4Q8N2C3 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
DEPDC4Q8N2C3 RPS2P7-201ENST00000447334 885 ntBASIC20.83■□□□□ 0.93
DEPDC4Q8N2C3 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC20.83■□□□□ 0.93
DEPDC4Q8N2C3 AC087393.1-201ENST00000582896 145 ntBASIC20.83■□□□□ 0.93
DEPDC4Q8N2C3 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
DEPDC4Q8N2C3 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
DEPDC4Q8N2C3 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
DEPDC4Q8N2C3 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
DEPDC4Q8N2C3 HMX2-201ENST00000339992 1628 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
DEPDC4Q8N2C3 EGFL8-220ENST00000395512 1312 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
DEPDC4Q8N2C3 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC20.82■□□□□ 0.92
DEPDC4Q8N2C3 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC20.82■□□□□ 0.92
DEPDC4Q8N2C3 AL161729.1-201ENST00000604104 1402 ntBASIC20.82■□□□□ 0.92
DEPDC4Q8N2C3 FKBP1B-202ENST00000380991 1010 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
DEPDC4Q8N2C3 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC20.82■□□□□ 0.92
DEPDC4Q8N2C3 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC20.82■□□□□ 0.92
DEPDC4Q8N2C3 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC20.82■□□□□ 0.92
DEPDC4Q8N2C3 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
DEPDC4Q8N2C3 MPST-203ENST00000401419 1345 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
DEPDC4Q8N2C3 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
DEPDC4Q8N2C3 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC20.81■□□□□ 0.92
DEPDC4Q8N2C3 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC20.81■□□□□ 0.92
DEPDC4Q8N2C3 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
DEPDC4Q8N2C3 BEX3-202ENST00000372634 753 ntTSL 2 BASIC20.81■□□□□ 0.92
DEPDC4Q8N2C3 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC20.81■□□□□ 0.92
DEPDC4Q8N2C3 NAT14-201ENST00000205194 1536 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
DEPDC4Q8N2C3 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
DEPDC4Q8N2C3 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
DEPDC4Q8N2C3 ECEL1P1-201ENST00000373592 1742 ntBASIC20.81■□□□□ 0.92
DEPDC4Q8N2C3 ARL6IP4-210ENST00000453766 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
DEPDC4Q8N2C3 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
DEPDC4Q8N2C3 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
DEPDC4Q8N2C3 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
DEPDC4Q8N2C3 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC20.8■□□□□ 0.92
DEPDC4Q8N2C3 MTERF3-201ENST00000287025 1409 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
DEPDC4Q8N2C3 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC20.8■□□□□ 0.92
DEPDC4Q8N2C3 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
DEPDC4Q8N2C3 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC20.8■□□□□ 0.92
DEPDC4Q8N2C3 GUCD1-207ENST00000447813 895 ntTSL 3 BASIC20.8■□□□□ 0.92
DEPDC4Q8N2C3 AC019171.1-201ENST00000601251 1056 ntBASIC20.8■□□□□ 0.92
DEPDC4Q8N2C3 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC20.8■□□□□ 0.92
DEPDC4Q8N2C3 GALR2-201ENST00000329003 1364 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
DEPDC4Q8N2C3 AC137767.1-201ENST00000602918 1920 ntBASIC20.8■□□□□ 0.92
DEPDC4Q8N2C3 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC20.8■□□□□ 0.92
DEPDC4Q8N2C3 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
DEPDC4Q8N2C3 ZFAND2B-201ENST00000289528 1314 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
DEPDC4Q8N2C3 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
DEPDC4Q8N2C3 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC20.79■□□□□ 0.92
DEPDC4Q8N2C3 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
DEPDC4Q8N2C3 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
DEPDC4Q8N2C3 AL022341.2-201ENST00000573609 1417 ntTSL 3 BASIC20.78■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 19.3 ms