Protein–RNA interactions for Protein: P62857

RPS28, 40S ribosomal protein S28, humanhuman

Known RBP Predictions only

Length 69 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPS28P62857 RHBDD2-202ENST00000318622 1878 ntTSL 2 BASIC13.29□□□□□ -0.28
RPS28P62857 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
RPS28P62857 HES7-202ENST00000541682 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC13.29□□□□□ -0.28
RPS28P62857 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC13.29□□□□□ -0.28
RPS28P62857 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
RPS28P62857 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
RPS28P62857 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC13.29□□□□□ -0.28
RPS28P62857 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
RPS28P62857 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC13.29□□□□□ -0.28
RPS28P62857 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC13.28□□□□□ -0.28
RPS28P62857 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
RPS28P62857 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC13.28□□□□□ -0.28
RPS28P62857 FPGS-221ENST00000630236 2160 ntTSL 5 BASIC13.28□□□□□ -0.28
RPS28P62857 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
RPS28P62857 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
RPS28P62857 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
RPS28P62857 AC005082.1-201ENST00000413042 2259 ntBASIC13.28□□□□□ -0.28
RPS28P62857 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
RPS28P62857 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC13.28□□□□□ -0.28
RPS28P62857 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
RPS28P62857 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC13.28□□□□□ -0.28
RPS28P62857 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
RPS28P62857 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
RPS28P62857 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
RPS28P62857 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
RPS28P62857 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC13.27□□□□□ -0.28
RPS28P62857 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
RPS28P62857 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
RPS28P62857 HGNC:18790-203ENST00000433139 2254 ntAPPRIS P1 TSL 2 BASIC13.27□□□□□ -0.28
RPS28P62857 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC13.27□□□□□ -0.29
RPS28P62857 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC13.27□□□□□ -0.29
RPS28P62857 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
RPS28P62857 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
RPS28P62857 AP003733.4-201ENST00000623785 1697 ntBASIC13.27□□□□□ -0.29
RPS28P62857 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC13.27□□□□□ -0.29
RPS28P62857 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC13.27□□□□□ -0.29
RPS28P62857 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
RPS28P62857 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
RPS28P62857 LTB4R2-202ENST00000528054 3092 ntBASIC13.26□□□□□ -0.29
RPS28P62857 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
RPS28P62857 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
RPS28P62857 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC13.26□□□□□ -0.29
RPS28P62857 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
RPS28P62857 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
RPS28P62857 SMOX-203ENST00000339123 2074 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
RPS28P62857 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
RPS28P62857 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
RPS28P62857 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
RPS28P62857 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC13.26□□□□□ -0.29
RPS28P62857 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC13.26□□□□□ -0.29
RPS28P62857 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC13.26□□□□□ -0.29
RPS28P62857 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
RPS28P62857 C11orf96-202ENST00000528572 1834 ntBASIC13.26□□□□□ -0.29
RPS28P62857 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC13.26□□□□□ -0.29
RPS28P62857 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC13.26□□□□□ -0.29
RPS28P62857 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC13.26□□□□□ -0.29
RPS28P62857 BX323043.1-201ENST00000641006 1765 ntBASIC13.26□□□□□ -0.29
RPS28P62857 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC13.26□□□□□ -0.29
RPS28P62857 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
RPS28P62857 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
RPS28P62857 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC13.25□□□□□ -0.29
RPS28P62857 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC13.25□□□□□ -0.29
RPS28P62857 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
RPS28P62857 SV2B-203ENST00000545111 2099 ntTSL 2 BASIC13.25□□□□□ -0.29
RPS28P62857 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC13.25□□□□□ -0.29
RPS28P62857 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC13.25□□□□□ -0.29
RPS28P62857 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
RPS28P62857 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC13.25□□□□□ -0.29
RPS28P62857 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
RPS28P62857 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
RPS28P62857 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC13.25□□□□□ -0.29
RPS28P62857 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
RPS28P62857 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC13.25□□□□□ -0.29
RPS28P62857 CYP4V2-201ENST00000378802 2042 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
RPS28P62857 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
RPS28P62857 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC13.25□□□□□ -0.29
RPS28P62857 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC13.25□□□□□ -0.29
RPS28P62857 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
RPS28P62857 SLC25A28-201ENST00000370495 1451 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
RPS28P62857 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC13.24□□□□□ -0.29
RPS28P62857 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC13.24□□□□□ -0.29
RPS28P62857 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
RPS28P62857 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC13.24□□□□□ -0.29
RPS28P62857 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC13.24□□□□□ -0.29
RPS28P62857 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC13.24□□□□□ -0.29
RPS28P62857 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC13.24□□□□□ -0.29
RPS28P62857 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC13.24□□□□□ -0.29
RPS28P62857 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
RPS28P62857 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
RPS28P62857 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
RPS28P62857 DUSP15-202ENST00000339738 1454 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
RPS28P62857 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
RPS28P62857 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
RPS28P62857 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
RPS28P62857 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
RPS28P62857 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
RPS28P62857 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
RPS28P62857 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC13.23□□□□□ -0.29
RPS28P62857 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC13.23□□□□□ -0.29
RPS28P62857 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Retrieved 100 of 98,524 protein–RNA pairs in 30.2 ms