Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC21.1■□□□□ 0.97
RFX3P48380 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC21.1■□□□□ 0.97
RFX3P48380 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
RFX3P48380 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC21.1■□□□□ 0.97
RFX3P48380 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC21.1■□□□□ 0.97
RFX3P48380 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
RFX3P48380 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC21.1■□□□□ 0.97
RFX3P48380 ARSB-202ENST00000396151 2316 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
RFX3P48380 BIN1-207ENST00000357970 2497 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
RFX3P48380 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC21.09■□□□□ 0.97
RFX3P48380 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
RFX3P48380 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
RFX3P48380 CASK-201ENST00000378154 2494 ntTSL 5 BASIC21.09■□□□□ 0.97
RFX3P48380 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
RFX3P48380 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
RFX3P48380 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
RFX3P48380 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC21.09■□□□□ 0.97
RFX3P48380 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
RFX3P48380 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
RFX3P48380 EI24-213ENST00000618552 1747 ntTSL 5 BASIC21.09■□□□□ 0.97
RFX3P48380 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
RFX3P48380 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
RFX3P48380 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
RFX3P48380 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC21.08■□□□□ 0.97
RFX3P48380 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
RFX3P48380 EI24-204ENST00000527235 1625 ntTSL 5 BASIC21.08■□□□□ 0.97
RFX3P48380 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC21.08■□□□□ 0.97
RFX3P48380 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
RFX3P48380 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
RFX3P48380 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
RFX3P48380 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
RFX3P48380 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.97
RFX3P48380 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
RFX3P48380 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
RFX3P48380 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC21.08■□□□□ 0.97
RFX3P48380 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC21.08■□□□□ 0.97
RFX3P48380 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.97
RFX3P48380 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC21.08■□□□□ 0.97
RFX3P48380 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC21.08■□□□□ 0.97
RFX3P48380 WRNIP1-205ENST00000618555 2651 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
RFX3P48380 KISS1R-201ENST00000234371 1625 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
RFX3P48380 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC21.07■□□□□ 0.96
RFX3P48380 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC21.07■□□□□ 0.96
RFX3P48380 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC21.07■□□□□ 0.96
RFX3P48380 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC21.07■□□□□ 0.96
RFX3P48380 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
RFX3P48380 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC21.07■□□□□ 0.96
RFX3P48380 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
RFX3P48380 AC092028.1-203ENST00000608262 953 ntBASIC21.07■□□□□ 0.96
RFX3P48380 PTH1R-207ENST00000449590 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
RFX3P48380 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC21.06■□□□□ 0.96
RFX3P48380 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
RFX3P48380 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
RFX3P48380 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
RFX3P48380 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC21.06■□□□□ 0.96
RFX3P48380 MTDHP2-201ENST00000601468 714 ntBASIC21.06■□□□□ 0.96
RFX3P48380 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC21.06■□□□□ 0.96
RFX3P48380 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC21.06■□□□□ 0.96
RFX3P48380 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC21.06■□□□□ 0.96
RFX3P48380 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC21.06■□□□□ 0.96
RFX3P48380 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
RFX3P48380 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC21.05■□□□□ 0.96
RFX3P48380 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC21.05■□□□□ 0.96
RFX3P48380 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC21.05■□□□□ 0.96
RFX3P48380 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC21.05■□□□□ 0.96
RFX3P48380 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
RFX3P48380 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC21.05■□□□□ 0.96
RFX3P48380 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC21.05■□□□□ 0.96
RFX3P48380 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
RFX3P48380 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC21.04■□□□□ 0.96
RFX3P48380 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
RFX3P48380 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
RFX3P48380 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC21.04■□□□□ 0.96
RFX3P48380 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC21.04■□□□□ 0.96
RFX3P48380 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC21.04■□□□□ 0.96
RFX3P48380 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC21.04■□□□□ 0.96
RFX3P48380 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
RFX3P48380 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
RFX3P48380 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC21.04■□□□□ 0.96
RFX3P48380 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
RFX3P48380 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
RFX3P48380 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
RFX3P48380 ALG1L9P-201ENST00000508969 2165 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
RFX3P48380 SRXN1-201ENST00000381962 2698 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
RFX3P48380 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
RFX3P48380 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
RFX3P48380 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
RFX3P48380 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
RFX3P48380 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
RFX3P48380 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC21.04■□□□□ 0.96
RFX3P48380 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
RFX3P48380 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC21.03■□□□□ 0.96
RFX3P48380 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC21.03■□□□□ 0.96
RFX3P48380 REST-206ENST00000612429 1376 ntTSL 5 BASIC21.03■□□□□ 0.96
RFX3P48380 REST-207ENST00000616975 1370 ntTSL 5 BASIC21.03■□□□□ 0.96
RFX3P48380 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
RFX3P48380 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC21.03■□□□□ 0.96
RFX3P48380 IGFBP3-202ENST00000381083 1050 ntAPPRIS ALT1 TSL 5 BASIC21.03■□□□□ 0.96
RFX3P48380 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC21.03■□□□□ 0.96
RFX3P48380 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 24.8 ms