Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
HNF4AP41235 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC21.85■■□□□ 1.09
HNF4AP41235 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
HNF4AP41235 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC21.85■■□□□ 1.09
HNF4AP41235 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC21.84■■□□□ 1.09
HNF4AP41235 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC21.84■■□□□ 1.09
HNF4AP41235 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
HNF4AP41235 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC21.84■■□□□ 1.09
HNF4AP41235 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
HNF4AP41235 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
HNF4AP41235 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
HNF4AP41235 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC21.84■■□□□ 1.09
HNF4AP41235 TRIR-205ENST00000592273 783 ntTSL 3 BASIC21.84■■□□□ 1.09
HNF4AP41235 PEX5-205ENST00000420616 2477 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
HNF4AP41235 ZSCAN18-212ENST00000600404 1934 ntAPPRIS ALT2 TSL 2 BASIC21.84■■□□□ 1.09
HNF4AP41235 MYH7B-209ENST00000618182 6197 ntAPPRIS ALT2 TSL 5 BASIC21.84■■□□□ 1.09
HNF4AP41235 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
HNF4AP41235 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
HNF4AP41235 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC21.84■■□□□ 1.09
HNF4AP41235 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
HNF4AP41235 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC21.83■■□□□ 1.09
HNF4AP41235 AGAP3-201ENST00000335367 2675 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
HNF4AP41235 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC21.83■■□□□ 1.09
HNF4AP41235 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
HNF4AP41235 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
HNF4AP41235 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
HNF4AP41235 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC21.83■■□□□ 1.08
HNF4AP41235 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC21.83■■□□□ 1.08
HNF4AP41235 WRNIP1-205ENST00000618555 2651 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
HNF4AP41235 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC21.82■■□□□ 1.08
HNF4AP41235 PANK2-201ENST00000316562 2280 ntAPPRIS P2 TSL 1 (best) BASIC21.82■■□□□ 1.08
HNF4AP41235 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC21.82■■□□□ 1.08
HNF4AP41235 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC21.82■■□□□ 1.08
HNF4AP41235 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC21.82■■□□□ 1.08
HNF4AP41235 FOXO1-201ENST00000379561 5735 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
HNF4AP41235 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC21.82■■□□□ 1.08
HNF4AP41235 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC21.82■■□□□ 1.08
HNF4AP41235 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC21.82■■□□□ 1.08
HNF4AP41235 CREM-229ENST00000474362 1030 ntTSL 2 BASIC21.82■■□□□ 1.08
HNF4AP41235 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
HNF4AP41235 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
HNF4AP41235 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
HNF4AP41235 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC21.82■■□□□ 1.08
HNF4AP41235 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
HNF4AP41235 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
HNF4AP41235 NPEPL1-201ENST00000356091 2378 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
HNF4AP41235 BIN1-207ENST00000357970 2497 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
HNF4AP41235 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC21.81■■□□□ 1.08
HNF4AP41235 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
HNF4AP41235 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC21.81■■□□□ 1.08
HNF4AP41235 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
HNF4AP41235 REST-206ENST00000612429 1376 ntTSL 5 BASIC21.81■■□□□ 1.08
HNF4AP41235 REST-207ENST00000616975 1370 ntTSL 5 BASIC21.81■■□□□ 1.08
HNF4AP41235 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
HNF4AP41235 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
HNF4AP41235 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC21.8■■□□□ 1.08
HNF4AP41235 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
HNF4AP41235 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
HNF4AP41235 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
HNF4AP41235 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
HNF4AP41235 MIF-201ENST00000215754 939 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
HNF4AP41235 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
HNF4AP41235 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC21.8■■□□□ 1.08
HNF4AP41235 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC21.8■■□□□ 1.08
HNF4AP41235 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC21.8■■□□□ 1.08
HNF4AP41235 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC21.8■■□□□ 1.08
HNF4AP41235 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC21.8■■□□□ 1.08
HNF4AP41235 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
HNF4AP41235 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC21.8■■□□□ 1.08
HNF4AP41235 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
HNF4AP41235 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC21.79■■□□□ 1.08
HNF4AP41235 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
HNF4AP41235 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
HNF4AP41235 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC21.79■■□□□ 1.08
HNF4AP41235 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
HNF4AP41235 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC21.79■■□□□ 1.08
HNF4AP41235 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
HNF4AP41235 ABHD6-205ENST00000478253 2482 ntAPPRIS P1 TSL 2 BASIC21.79■■□□□ 1.08
HNF4AP41235 ADAMTS13-203ENST00000371910 1074 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
HNF4AP41235 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC21.79■■□□□ 1.08
HNF4AP41235 MTDHP2-201ENST00000601468 714 ntBASIC21.79■■□□□ 1.08
HNF4AP41235 MIR6722-201ENST00000617286 78 ntBASIC21.79■■□□□ 1.08
HNF4AP41235 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
HNF4AP41235 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
HNF4AP41235 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC21.79■■□□□ 1.08
HNF4AP41235 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC21.79■■□□□ 1.08
HNF4AP41235 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
HNF4AP41235 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC21.79■■□□□ 1.08
HNF4AP41235 NKX6-3-202ENST00000524115 1683 ntTSL 2 BASIC21.79■■□□□ 1.08
HNF4AP41235 FZD8-201ENST00000374694 4030 ntAPPRIS P1 BASIC21.78■■□□□ 1.08
HNF4AP41235 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
HNF4AP41235 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC21.78■■□□□ 1.08
HNF4AP41235 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
HNF4AP41235 BMP2K-204ENST00000502871 3195 ntAPPRIS P3 TSL 1 (best) BASIC21.78■■□□□ 1.08
HNF4AP41235 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
HNF4AP41235 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
HNF4AP41235 GUSBP5-201ENST00000418136 578 ntBASIC21.78■■□□□ 1.08
HNF4AP41235 UNC93B8-201ENST00000511903 705 ntBASIC21.78■■□□□ 1.08
HNF4AP41235 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC21.78■■□□□ 1.08
HNF4AP41235 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC21.78■■□□□ 1.08
Retrieved 100 of 98,524 protein–RNA pairs in 26 ms