Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 BFSP1-202ENST00000377873 2207 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
SOX3P41225 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.98
SOX3P41225 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC21.16■□□□□ 0.98
SOX3P41225 SLC19A1-202ENST00000380010 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
SOX3P41225 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
SOX3P41225 ARSB-206ENST00000565165 1772 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
SOX3P41225 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
SOX3P41225 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.98
SOX3P41225 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC21.16■□□□□ 0.98
SOX3P41225 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC21.16■□□□□ 0.98
SOX3P41225 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC21.16■□□□□ 0.98
SOX3P41225 AL356740.2-201ENST00000601559 647 ntBASIC21.16■□□□□ 0.98
SOX3P41225 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC21.16■□□□□ 0.98
SOX3P41225 ME2-208ENST00000638937 2471 ntTSL 5 BASIC21.16■□□□□ 0.98
SOX3P41225 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC21.16■□□□□ 0.98
SOX3P41225 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
SOX3P41225 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC21.15■□□□□ 0.98
SOX3P41225 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC21.15■□□□□ 0.98
SOX3P41225 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC21.15■□□□□ 0.98
SOX3P41225 AC008406.3-201ENST00000620001 1374 ntBASIC21.15■□□□□ 0.98
SOX3P41225 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
SOX3P41225 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC21.15■□□□□ 0.98
SOX3P41225 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC21.15■□□□□ 0.98
SOX3P41225 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC21.15■□□□□ 0.98
SOX3P41225 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC21.15■□□□□ 0.98
SOX3P41225 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
SOX3P41225 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
SOX3P41225 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
SOX3P41225 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.98
SOX3P41225 RPP21-222ENST00000433076 577 ntTSL 2 BASIC21.14■□□□□ 0.97
SOX3P41225 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
SOX3P41225 KRT72-203ENST00000537672 1813 ntAPPRIS P1 TSL 2 BASIC21.13■□□□□ 0.97
SOX3P41225 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC21.13■□□□□ 0.97
SOX3P41225 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
SOX3P41225 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC21.13■□□□□ 0.97
SOX3P41225 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC21.13■□□□□ 0.97
SOX3P41225 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
SOX3P41225 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC21.13■□□□□ 0.97
SOX3P41225 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC21.13■□□□□ 0.97
SOX3P41225 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
SOX3P41225 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
SOX3P41225 LRRC73-201ENST00000372441 2121 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
SOX3P41225 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
SOX3P41225 HRH3-202ENST00000340177 2659 ntAPPRIS P2 TSL 1 (best) BASIC21.12■□□□□ 0.97
SOX3P41225 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC21.12■□□□□ 0.97
SOX3P41225 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC21.12■□□□□ 0.97
SOX3P41225 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC21.12■□□□□ 0.97
SOX3P41225 GOLGA7-201ENST00000357743 2027 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
SOX3P41225 AC141586.4-201ENST00000624558 1573 ntBASIC21.12■□□□□ 0.97
SOX3P41225 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC21.12■□□□□ 0.97
SOX3P41225 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC21.12■□□□□ 0.97
SOX3P41225 AC131281.2-201ENST00000520478 145 ntBASIC21.12■□□□□ 0.97
SOX3P41225 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC21.12■□□□□ 0.97
SOX3P41225 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
SOX3P41225 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC21.11■□□□□ 0.97
SOX3P41225 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC21.11■□□□□ 0.97
SOX3P41225 AC004812.2-201ENST00000611079 2094 ntBASIC21.11■□□□□ 0.97
SOX3P41225 CD37-213ENST00000598095 1598 ntTSL 2 BASIC21.11■□□□□ 0.97
SOX3P41225 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
SOX3P41225 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
SOX3P41225 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
SOX3P41225 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
SOX3P41225 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC21.11■□□□□ 0.97
SOX3P41225 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
SOX3P41225 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
SOX3P41225 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC21.11■□□□□ 0.97
SOX3P41225 REST-206ENST00000612429 1376 ntTSL 5 BASIC21.1■□□□□ 0.97
SOX3P41225 REST-207ENST00000616975 1370 ntTSL 5 BASIC21.1■□□□□ 0.97
SOX3P41225 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
SOX3P41225 SLC39A4-202ENST00000301305 2174 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
SOX3P41225 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
SOX3P41225 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
SOX3P41225 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
SOX3P41225 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
SOX3P41225 LINC02043-201ENST00000419745 1832 ntTSL 2 BASIC21.1■□□□□ 0.97
SOX3P41225 AKT1-201ENST00000349310 2866 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
SOX3P41225 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
SOX3P41225 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
SOX3P41225 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
SOX3P41225 C9orf163-202ENST00000624034 2573 ntBASIC21.09■□□□□ 0.97
SOX3P41225 AC005703.6-201ENST00000623265 1329 ntBASIC21.09■□□□□ 0.97
SOX3P41225 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
SOX3P41225 ARSB-202ENST00000396151 2316 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
SOX3P41225 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC21.09■□□□□ 0.97
SOX3P41225 GNPTG-201ENST00000204679 1983 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
SOX3P41225 DACT3-202ENST00000391916 2834 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
SOX3P41225 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
SOX3P41225 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC21.09■□□□□ 0.97
SOX3P41225 PTH1R-207ENST00000449590 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
SOX3P41225 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC21.09■□□□□ 0.97
SOX3P41225 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
SOX3P41225 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
SOX3P41225 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC21.09■□□□□ 0.97
SOX3P41225 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC21.09■□□□□ 0.97
SOX3P41225 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
SOX3P41225 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
SOX3P41225 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC21.09■□□□□ 0.97
SOX3P41225 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
SOX3P41225 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC21.08■□□□□ 0.97
SOX3P41225 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 24 ms