Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC26.71■■□□□ 1.87
HMGB1P09429 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC26.71■■□□□ 1.87
HMGB1P09429 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC26.71■■□□□ 1.87
HMGB1P09429 PANK2-201ENST00000316562 2280 ntAPPRIS P2 TSL 1 (best) BASIC26.71■■□□□ 1.87
HMGB1P09429 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC26.71■■□□□ 1.87
HMGB1P09429 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC26.71■■□□□ 1.87
HMGB1P09429 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC26.71■■□□□ 1.87
HMGB1P09429 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC26.71■■□□□ 1.87
HMGB1P09429 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC26.71■■□□□ 1.87
HMGB1P09429 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC26.7■■□□□ 1.87
HMGB1P09429 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC26.7■■□□□ 1.87
HMGB1P09429 MTDHP2-201ENST00000601468 714 ntBASIC26.7■■□□□ 1.86
HMGB1P09429 DUSP8P3-201ENST00000399571 1760 ntBASIC26.7■■□□□ 1.86
HMGB1P09429 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC26.7■■□□□ 1.86
HMGB1P09429 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC26.7■■□□□ 1.86
HMGB1P09429 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC26.7■■□□□ 1.86
HMGB1P09429 WRNIP1-205ENST00000618555 2651 ntAPPRIS P1 TSL 1 (best) BASIC26.7■■□□□ 1.86
HMGB1P09429 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC26.7■■□□□ 1.86
HMGB1P09429 SLCO3A1-201ENST00000318445 5115 ntAPPRIS P1 TSL 1 (best) BASIC26.69■■□□□ 1.86
HMGB1P09429 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC26.69■■□□□ 1.86
HMGB1P09429 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC26.69■■□□□ 1.86
HMGB1P09429 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC26.69■■□□□ 1.86
HMGB1P09429 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC26.69■■□□□ 1.86
HMGB1P09429 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC26.69■■□□□ 1.86
HMGB1P09429 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC26.69■■□□□ 1.86
HMGB1P09429 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC26.69■■□□□ 1.86
HMGB1P09429 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC26.68■■□□□ 1.86
HMGB1P09429 ABHD17C-201ENST00000258884 2368 ntAPPRIS P1 TSL 1 (best) BASIC26.68■■□□□ 1.86
HMGB1P09429 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC26.68■■□□□ 1.86
HMGB1P09429 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC26.68■■□□□ 1.86
HMGB1P09429 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC26.68■■□□□ 1.86
HMGB1P09429 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC26.68■■□□□ 1.86
HMGB1P09429 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC26.68■■□□□ 1.86
HMGB1P09429 NPEPL1-201ENST00000356091 2378 ntAPPRIS P1 TSL 1 (best) BASIC26.68■■□□□ 1.86
HMGB1P09429 ABHD6-205ENST00000478253 2482 ntAPPRIS P1 TSL 2 BASIC26.67■■□□□ 1.86
HMGB1P09429 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC26.67■■□□□ 1.86
HMGB1P09429 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC26.67■■□□□ 1.86
HMGB1P09429 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC26.67■■□□□ 1.86
HMGB1P09429 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
HMGB1P09429 QKI-207ENST00000453779 5685 ntTSL 1 (best) BASIC26.67■■□□□ 1.86
HMGB1P09429 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
HMGB1P09429 EXOG-217ENST00000630638 197 ntTSL 5 BASIC26.67■■□□□ 1.86
HMGB1P09429 NKX6-3-202ENST00000524115 1683 ntTSL 2 BASIC26.66■■□□□ 1.86
HMGB1P09429 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC26.66■■□□□ 1.86
HMGB1P09429 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC26.66■■□□□ 1.86
HMGB1P09429 AC010997.5-201ENST00000609182 354 ntBASIC26.66■■□□□ 1.86
HMGB1P09429 AL035685.1-201ENST00000636663 812 ntBASIC26.66■■□□□ 1.86
HMGB1P09429 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC26.66■■□□□ 1.86
HMGB1P09429 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC26.66■■□□□ 1.86
HMGB1P09429 RNF19B-203ENST00000373456 2560 ntAPPRIS P3 TSL 1 (best) BASIC26.66■■□□□ 1.86
HMGB1P09429 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC26.66■■□□□ 1.86
HMGB1P09429 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC26.66■■□□□ 1.86
HMGB1P09429 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC26.66■■□□□ 1.86
HMGB1P09429 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC26.66■■□□□ 1.86
HMGB1P09429 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC26.66■■□□□ 1.86
HMGB1P09429 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC26.66■■□□□ 1.86
HMGB1P09429 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC26.66■■□□□ 1.86
HMGB1P09429 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC26.66■■□□□ 1.86
HMGB1P09429 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC26.65■■□□□ 1.86
HMGB1P09429 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC26.65■■□□□ 1.86
HMGB1P09429 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
HMGB1P09429 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC26.64■■□□□ 1.86
HMGB1P09429 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC26.64■■□□□ 1.86
HMGB1P09429 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC26.64■■□□□ 1.86
HMGB1P09429 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC26.64■■□□□ 1.86
HMGB1P09429 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC26.64■■□□□ 1.85
HMGB1P09429 AC079630.1-202ENST00000618127 1840 ntBASIC26.64■■□□□ 1.85
HMGB1P09429 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC26.64■■□□□ 1.85
HMGB1P09429 SRXN1-201ENST00000381962 2698 ntAPPRIS P1 TSL 1 (best) BASIC26.63■■□□□ 1.85
HMGB1P09429 HES6-204ENST00000409182 863 ntTSL 2 BASIC26.63■■□□□ 1.85
HMGB1P09429 OR2A1-AS1-204ENST00000470435 602 ntBASIC26.63■■□□□ 1.85
HMGB1P09429 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC26.63■■□□□ 1.85
HMGB1P09429 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC26.63■■□□□ 1.85
HMGB1P09429 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC26.63■■□□□ 1.85
HMGB1P09429 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC26.62■■□□□ 1.85
HMGB1P09429 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC26.62■■□□□ 1.85
HMGB1P09429 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC26.62■■□□□ 1.85
HMGB1P09429 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC26.62■■□□□ 1.85
HMGB1P09429 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC26.62■■□□□ 1.85
HMGB1P09429 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC26.62■■□□□ 1.85
HMGB1P09429 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC26.62■■□□□ 1.85
HMGB1P09429 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC26.62■■□□□ 1.85
HMGB1P09429 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC26.62■■□□□ 1.85
HMGB1P09429 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC26.62■■□□□ 1.85
HMGB1P09429 TSPY9P-201ENST00000440215 945 ntBASIC26.62■■□□□ 1.85
HMGB1P09429 TSPY11P-201ENST00000442607 1045 ntBASIC26.62■■□□□ 1.85
HMGB1P09429 LTK-203ENST00000453182 2412 ntTSL 2 BASIC26.62■■□□□ 1.85
HMGB1P09429 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC26.62■■□□□ 1.85
HMGB1P09429 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC26.62■■□□□ 1.85
HMGB1P09429 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC26.61■■□□□ 1.85
HMGB1P09429 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC26.61■■□□□ 1.85
HMGB1P09429 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC26.61■■□□□ 1.85
HMGB1P09429 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC26.61■■□□□ 1.85
HMGB1P09429 IRX4-202ENST00000505790 2538 ntAPPRIS P1 TSL 1 (best) BASIC26.61■■□□□ 1.85
HMGB1P09429 CD72-202ENST00000378430 585 ntTSL 3 BASIC26.61■■□□□ 1.85
HMGB1P09429 CREM-229ENST00000474362 1030 ntTSL 2 BASIC26.61■■□□□ 1.85
HMGB1P09429 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC26.61■■□□□ 1.85
HMGB1P09429 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC26.61■■□□□ 1.85
HMGB1P09429 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC26.6■■□□□ 1.85
HMGB1P09429 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC26.6■■□□□ 1.85
Retrieved 100 of 98,524 protein–RNA pairs in 17.1 ms