Protein–RNA interactions for Protein: O95639

CPSF4, Cleavage and polyadenylation specificity factor subunit 4, humanhuman

Known RBP Predictions only

Length 269 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4O95639 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
CPSF4O95639 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC21.44■■□□□ 1.02
CPSF4O95639 THA1P-201ENST00000590384 1145 ntBASIC21.44■■□□□ 1.02
CPSF4O95639 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
CPSF4O95639 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
CPSF4O95639 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC21.44■■□□□ 1.02
CPSF4O95639 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
CPSF4O95639 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC21.43■■□□□ 1.02
CPSF4O95639 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC21.43■■□□□ 1.02
CPSF4O95639 VSTM2A-202ENST00000402613 1076 ntTSL 2 BASIC21.43■■□□□ 1.02
CPSF4O95639 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
CPSF4O95639 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
CPSF4O95639 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC21.43■■□□□ 1.02
CPSF4O95639 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
CPSF4O95639 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC21.43■■□□□ 1.02
CPSF4O95639 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
CPSF4O95639 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC21.43■■□□□ 1.02
CPSF4O95639 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
CPSF4O95639 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
CPSF4O95639 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC21.43■■□□□ 1.02
CPSF4O95639 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
CPSF4O95639 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
CPSF4O95639 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
CPSF4O95639 KRT18P24-201ENST00000344739 1156 ntBASIC21.42■■□□□ 1.02
CPSF4O95639 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
CPSF4O95639 NAPRT-204ENST00000449291 1965 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
CPSF4O95639 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC21.42■■□□□ 1.02
CPSF4O95639 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC21.42■■□□□ 1.02
CPSF4O95639 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC21.41■■□□□ 1.02
CPSF4O95639 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
CPSF4O95639 AF131216.4-201ENST00000638924 1588 ntBASIC21.41■■□□□ 1.02
CPSF4O95639 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC21.41■■□□□ 1.02
CPSF4O95639 MIR4281-201ENST00000580852 62 ntBASIC21.41■■□□□ 1.02
CPSF4O95639 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC21.41■■□□□ 1.02
CPSF4O95639 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
CPSF4O95639 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC21.41■■□□□ 1.02
CPSF4O95639 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
CPSF4O95639 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC21.41■■□□□ 1.02
CPSF4O95639 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC21.41■■□□□ 1.02
CPSF4O95639 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC21.41■■□□□ 1.02
CPSF4O95639 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC21.41■■□□□ 1.02
CPSF4O95639 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC21.41■■□□□ 1.02
CPSF4O95639 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
CPSF4O95639 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
CPSF4O95639 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
CPSF4O95639 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
CPSF4O95639 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC21.4■■□□□ 1.02
CPSF4O95639 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
CPSF4O95639 GUK1-208ENST00000366728 842 ntTSL 2 BASIC21.4■■□□□ 1.02
CPSF4O95639 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
CPSF4O95639 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC21.4■■□□□ 1.02
CPSF4O95639 ATXN3-252ENST00000620536 1044 ntTSL 5 BASIC21.4■■□□□ 1.02
CPSF4O95639 ATXN3-253ENST00000621269 936 ntTSL 5 BASIC21.4■■□□□ 1.02
CPSF4O95639 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
CPSF4O95639 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC21.4■■□□□ 1.02
CPSF4O95639 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC21.4■■□□□ 1.02
CPSF4O95639 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
CPSF4O95639 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC21.39■■□□□ 1.02
CPSF4O95639 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC21.39■■□□□ 1.01
CPSF4O95639 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
CPSF4O95639 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC21.39■■□□□ 1.01
CPSF4O95639 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC21.39■■□□□ 1.01
CPSF4O95639 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC21.39■■□□□ 1.01
CPSF4O95639 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC21.39■■□□□ 1.01
CPSF4O95639 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
CPSF4O95639 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
CPSF4O95639 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC21.39■■□□□ 1.01
CPSF4O95639 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC21.38■■□□□ 1.01
CPSF4O95639 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
CPSF4O95639 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC21.38■■□□□ 1.01
CPSF4O95639 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
CPSF4O95639 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
CPSF4O95639 AC079834.2-201ENST00000609776 1949 ntBASIC21.38■■□□□ 1.01
CPSF4O95639 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC21.38■■□□□ 1.01
CPSF4O95639 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC21.38■■□□□ 1.01
CPSF4O95639 CCDC37-AS1-202ENST00000506660 986 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
CPSF4O95639 ELOC-207ENST00000522337 816 ntAPPRIS P1 TSL 2 BASIC21.38■■□□□ 1.01
CPSF4O95639 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC21.38■■□□□ 1.01
CPSF4O95639 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC21.38■■□□□ 1.01
CPSF4O95639 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
CPSF4O95639 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
CPSF4O95639 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC21.38■■□□□ 1.01
CPSF4O95639 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC21.38■■□□□ 1.01
CPSF4O95639 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC21.38■■□□□ 1.01
CPSF4O95639 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
CPSF4O95639 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
CPSF4O95639 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
CPSF4O95639 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC21.37■■□□□ 1.01
CPSF4O95639 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC21.37■■□□□ 1.01
CPSF4O95639 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
CPSF4O95639 C1orf229-201ENST00000623686 2258 ntBASIC21.37■■□□□ 1.01
CPSF4O95639 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
CPSF4O95639 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
CPSF4O95639 AC233723.2-201ENST00000623798 2106 ntBASIC21.37■■□□□ 1.01
CPSF4O95639 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
CPSF4O95639 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC21.36■■□□□ 1.01
CPSF4O95639 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
CPSF4O95639 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
CPSF4O95639 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC21.36■■□□□ 1.01
CPSF4O95639 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
Retrieved 100 of 98,524 protein–RNA pairs in 16.7 ms