Protein–RNA interactions for Protein: O14627

CDX4, Homeobox protein CDX-4, humanhuman

Predicted RBP Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX4O14627 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC22.11■■□□□ 1.13
CDX4O14627 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC22.11■■□□□ 1.13
CDX4O14627 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
CDX4O14627 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
CDX4O14627 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC22.11■■□□□ 1.13
CDX4O14627 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
CDX4O14627 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC22.1■■□□□ 1.13
CDX4O14627 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
CDX4O14627 SLC6A10P-202ENST00000431994 2058 ntBASIC22.1■■□□□ 1.13
CDX4O14627 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
CDX4O14627 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC22.1■■□□□ 1.13
CDX4O14627 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC22.1■■□□□ 1.13
CDX4O14627 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
CDX4O14627 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
CDX4O14627 ARHGEF7-206ENST00000375741 5525 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
CDX4O14627 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
CDX4O14627 USF2-207ENST00000595068 1612 ntTSL 5 BASIC22.09■■□□□ 1.13
CDX4O14627 SLC12A2-202ENST00000343225 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC22.09■■□□□ 1.13
CDX4O14627 TALDO1-201ENST00000319006 1346 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
CDX4O14627 SCCPDH-201ENST00000366510 2503 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
CDX4O14627 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
CDX4O14627 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC22.09■■□□□ 1.13
CDX4O14627 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC22.09■■□□□ 1.13
CDX4O14627 AC080038.1-201ENST00000611274 1154 ntBASIC22.09■■□□□ 1.13
CDX4O14627 MAPK13-201ENST00000211287 2052 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
CDX4O14627 E2F5-202ENST00000416274 1728 ntAPPRIS P4 TSL 1 (best) BASIC22.09■■□□□ 1.13
CDX4O14627 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC22.08■■□□□ 1.13
CDX4O14627 AC141586.4-201ENST00000624558 1573 ntBASIC22.08■■□□□ 1.13
CDX4O14627 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC22.08■■□□□ 1.13
CDX4O14627 RNF19B-201ENST00000235150 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC22.08■■□□□ 1.13
CDX4O14627 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
CDX4O14627 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC22.08■■□□□ 1.13
CDX4O14627 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC22.08■■□□□ 1.13
CDX4O14627 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC22.08■■□□□ 1.13
CDX4O14627 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
CDX4O14627 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
CDX4O14627 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC22.08■■□□□ 1.13
CDX4O14627 RAP2CP1-201ENST00000605103 478 ntBASIC22.08■■□□□ 1.13
CDX4O14627 MROH6-210ENST00000533679 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC22.08■■□□□ 1.12
CDX4O14627 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
CDX4O14627 MIR6089-201ENST00000616698 64 ntBASIC22.07■■□□□ 1.12
CDX4O14627 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
CDX4O14627 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC22.06■■□□□ 1.12
CDX4O14627 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC22.06■■□□□ 1.12
CDX4O14627 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC22.06■■□□□ 1.12
CDX4O14627 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC22.06■■□□□ 1.12
CDX4O14627 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC22.06■■□□□ 1.12
CDX4O14627 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC22.06■■□□□ 1.12
CDX4O14627 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC22.06■■□□□ 1.12
CDX4O14627 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC22.06■■□□□ 1.12
CDX4O14627 GXYLT1P5-201ENST00000614548 1189 ntBASIC22.06■■□□□ 1.12
CDX4O14627 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
CDX4O14627 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC22.06■■□□□ 1.12
CDX4O14627 MEX3D-201ENST00000402693 2850 ntAPPRIS P2 TSL 1 (best) BASIC22.06■■□□□ 1.12
CDX4O14627 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
CDX4O14627 ZDHHC16-204ENST00000370842 1877 ntAPPRIS ALT1 TSL 5 BASIC22.05■■□□□ 1.12
CDX4O14627 RRP9-201ENST00000232888 1578 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
CDX4O14627 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC22.05■■□□□ 1.12
CDX4O14627 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
CDX4O14627 AC006015.1-201ENST00000429970 570 ntBASIC22.05■■□□□ 1.12
CDX4O14627 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
CDX4O14627 EMC9-206ENST00000560403 872 ntTSL 2 BASIC22.05■■□□□ 1.12
CDX4O14627 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
CDX4O14627 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC22.05■■□□□ 1.12
CDX4O14627 FUT11-202ENST00000394790 2175 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
CDX4O14627 SMOX-203ENST00000339123 2074 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
CDX4O14627 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
CDX4O14627 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC22.04■■□□□ 1.12
CDX4O14627 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC22.04■■□□□ 1.12
CDX4O14627 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC22.04■■□□□ 1.12
CDX4O14627 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC22.04■■□□□ 1.12
CDX4O14627 CDCA4P2-201ENST00000441182 718 ntBASIC22.04■■□□□ 1.12
CDX4O14627 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
CDX4O14627 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC22.04■■□□□ 1.12
CDX4O14627 PKMYT1-211ENST00000573944 1891 ntAPPRIS P1 TSL 5 BASIC22.04■■□□□ 1.12
CDX4O14627 KRT72-202ENST00000354310 1764 ntTSL 2 BASIC22.04■■□□□ 1.12
CDX4O14627 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
CDX4O14627 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC22.03■■□□□ 1.12
CDX4O14627 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC22.03■■□□□ 1.12
CDX4O14627 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC22.03■■□□□ 1.12
CDX4O14627 KIAA2013-202ENST00000376576 2539 ntTSL 2 BASIC22.03■■□□□ 1.12
CDX4O14627 PKM-203ENST00000389093 2279 ntTSL 5 BASIC22.03■■□□□ 1.12
CDX4O14627 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC22.03■■□□□ 1.12
CDX4O14627 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
CDX4O14627 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
CDX4O14627 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
CDX4O14627 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
CDX4O14627 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
CDX4O14627 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC22.03■■□□□ 1.12
CDX4O14627 KCNF1-201ENST00000295082 2289 ntAPPRIS P1 BASIC22.03■■□□□ 1.12
CDX4O14627 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC22.03■■□□□ 1.12
CDX4O14627 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC22.03■■□□□ 1.12
CDX4O14627 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC22.03■■□□□ 1.12
CDX4O14627 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC22.02■■□□□ 1.12
CDX4O14627 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
CDX4O14627 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC22.02■■□□□ 1.12
CDX4O14627 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
CDX4O14627 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC22.02■■□□□ 1.12
CDX4O14627 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC22.02■■□□□ 1.12
CDX4O14627 ABHD17AP1-201ENST00000358206 933 ntBASIC22.02■■□□□ 1.12
Retrieved 100 of 98,524 protein–RNA pairs in 22.3 ms