Protein–RNA interactions for Protein: O14529

CUX2, Homeobox protein cut-like 2, humanhuman

Predictions only

Length 1,486 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2O14529 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC39.43■■■■□ 3.9
CUX2O14529 TNFSF12-TNFSF13-201ENST00000293826 1816 ntAPPRIS P1 TSL 1 (best) BASIC39.43■■■■□ 3.9
CUX2O14529 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC39.43■■■■□ 3.9
CUX2O14529 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC39.43■■■■□ 3.9
CUX2O14529 GUSBP6-202ENST00000438529 1198 ntBASIC39.43■■■■□ 3.9
CUX2O14529 BCL3-201ENST00000164227 2038 ntAPPRIS P1 TSL 1 (best) BASIC39.42■■■■□ 3.9
CUX2O14529 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC39.42■■■■□ 3.9
CUX2O14529 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC39.41■■■■□ 3.9
CUX2O14529 MAPKAPK2-201ENST00000294981 2171 ntTSL 1 (best) BASIC39.4■■■■□ 3.9
CUX2O14529 ZNF747-203ENST00000568028 1511 ntAPPRIS P1 TSL 2 BASIC39.4■■■■□ 3.9
CUX2O14529 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC39.4■■■■□ 3.9
CUX2O14529 AC069152.1-201ENST00000438030 544 ntBASIC39.4■■■■□ 3.9
CUX2O14529 ITM2C-210ENST00000620962 501 ntBASIC39.4■■■■□ 3.9
CUX2O14529 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC39.4■■■■□ 3.9
CUX2O14529 GPR75-ASB3-201ENST00000406625 2113 ntAPPRIS P1 TSL 2 BASIC39.4■■■■□ 3.9
CUX2O14529 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC39.39■■■■□ 3.9
CUX2O14529 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC39.39■■■■□ 3.9
CUX2O14529 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC39.39■■■■□ 3.9
CUX2O14529 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC39.39■■■■□ 3.9
CUX2O14529 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC39.39■■■■□ 3.9
CUX2O14529 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC39.38■■■■□ 3.9
CUX2O14529 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC39.38■■■■□ 3.9
CUX2O14529 CKB-201ENST00000348956 1709 ntAPPRIS P1 TSL 1 (best) BASIC39.38■■■■□ 3.89
CUX2O14529 C16orf87-201ENST00000285697 1585 ntAPPRIS P1 TSL 1 (best) BASIC39.38■■■■□ 3.89
CUX2O14529 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC39.37■■■■□ 3.89
CUX2O14529 MTCH1-201ENST00000373616 2006 ntTSL 1 (best) BASIC39.37■■■■□ 3.89
CUX2O14529 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC39.37■■■■□ 3.89
CUX2O14529 SHF-208ENST00000560734 1731 ntTSL 3 BASIC39.37■■■■□ 3.89
CUX2O14529 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC39.37■■■■□ 3.89
CUX2O14529 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC39.37■■■■□ 3.89
CUX2O14529 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC39.37■■■■□ 3.89
CUX2O14529 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC39.37■■■■□ 3.89
CUX2O14529 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC39.37■■■■□ 3.89
CUX2O14529 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC39.36■■■■□ 3.89
CUX2O14529 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC39.36■■■■□ 3.89
CUX2O14529 RTN2-202ENST00000344680 2063 ntAPPRIS P1 TSL 1 (best) BASIC39.35■■■■□ 3.89
CUX2O14529 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC39.35■■■■□ 3.89
CUX2O14529 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC39.35■■■■□ 3.89
CUX2O14529 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC39.34■■■■□ 3.89
CUX2O14529 RHEB-201ENST00000262187 2075 ntAPPRIS P1 TSL 1 (best) BASIC39.34■■■■□ 3.89
CUX2O14529 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC39.34■■■■□ 3.89
CUX2O14529 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC39.34■■■■□ 3.89
CUX2O14529 TSPY6P-201ENST00000448518 926 ntBASIC39.34■■■■□ 3.89
CUX2O14529 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC39.34■■■■□ 3.89
CUX2O14529 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC39.34■■■■□ 3.89
CUX2O14529 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC39.34■■■■□ 3.89
CUX2O14529 TCF24-201ENST00000563496 2450 ntAPPRIS P1 TSL 5 BASIC39.34■■■■□ 3.89
CUX2O14529 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC39.34■■■■□ 3.89
CUX2O14529 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC39.33■■■■□ 3.89
CUX2O14529 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC39.33■■■■□ 3.89
CUX2O14529 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC39.33■■■■□ 3.89
CUX2O14529 HYAL2-202ENST00000395139 2136 ntAPPRIS P1 TSL 1 (best) BASIC39.33■■■■□ 3.89
CUX2O14529 KIAA2013-202ENST00000376576 2539 ntTSL 2 BASIC39.32■■■■□ 3.89
CUX2O14529 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC39.32■■■■□ 3.89
CUX2O14529 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC39.31■■■■□ 3.88
CUX2O14529 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC39.31■■■■□ 3.88
CUX2O14529 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC39.31■■■■□ 3.88
CUX2O14529 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC39.31■■■■□ 3.88
CUX2O14529 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC39.31■■■■□ 3.88
CUX2O14529 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC39.3■■■■□ 3.88
CUX2O14529 AL050303.2-201ENST00000619798 666 ntBASIC39.3■■■■□ 3.88
CUX2O14529 RDH14-201ENST00000381249 1587 ntAPPRIS P1 TSL 1 (best) BASIC39.3■■■■□ 3.88
CUX2O14529 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC39.3■■■■□ 3.88
CUX2O14529 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC39.3■■■■□ 3.88
CUX2O14529 AL121832.2-201ENST00000610979 668 ntBASIC39.3■■■■□ 3.88
CUX2O14529 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC39.29■■■■□ 3.88
CUX2O14529 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC39.29■■■■□ 3.88
CUX2O14529 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC39.29■■■■□ 3.88
CUX2O14529 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC39.29■■■■□ 3.88
CUX2O14529 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC39.29■■■■□ 3.88
CUX2O14529 SLC7A5P2-201ENST00000553010 536 ntBASIC39.29■■■■□ 3.88
CUX2O14529 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC39.29■■■■□ 3.88
CUX2O14529 LURAP1L-201ENST00000319264 1753 ntAPPRIS P1 TSL 1 (best) BASIC39.29■■■■□ 3.88
CUX2O14529 CCR10-201ENST00000332438 1773 ntAPPRIS P1 TSL 1 (best) BASIC39.29■■■■□ 3.88
CUX2O14529 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC39.28■■■■□ 3.88
CUX2O14529 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC39.28■■■■□ 3.88
CUX2O14529 ESRRA-201ENST00000000442 2215 ntAPPRIS P3 TSL 1 (best) BASIC39.28■■■■□ 3.88
CUX2O14529 HOXD13-201ENST00000392539 2240 ntAPPRIS P1 TSL 1 (best) BASIC39.27■■■■□ 3.88
CUX2O14529 POU5F1P3-201ENST00000428824 1078 ntBASIC39.27■■■■□ 3.88
CUX2O14529 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC39.27■■■■□ 3.88
CUX2O14529 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC39.27■■■■□ 3.88
CUX2O14529 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC39.27■■■■□ 3.88
CUX2O14529 UNCX-201ENST00000316333 2048 ntAPPRIS P1 TSL 1 (best) BASIC39.27■■■■□ 3.88
CUX2O14529 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC39.27■■■■□ 3.88
CUX2O14529 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC39.26■■■■□ 3.88
CUX2O14529 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC39.26■■■■□ 3.88
CUX2O14529 BIN1-204ENST00000348750 2074 ntTSL 1 (best) BASIC39.26■■■■□ 3.87
CUX2O14529 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC39.25■■■■□ 3.87
CUX2O14529 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC39.25■■■■□ 3.87
CUX2O14529 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC39.25■■■■□ 3.87
CUX2O14529 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC39.25■■■■□ 3.87
CUX2O14529 RPS2P52-201ENST00000469610 820 ntBASIC39.25■■■■□ 3.87
CUX2O14529 MPST-204ENST00000404393 1329 ntTSL 5 BASIC39.25■■■■□ 3.87
CUX2O14529 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC39.25■■■■□ 3.87
CUX2O14529 PLSCR3-209ENST00000574401 2032 ntAPPRIS P1 TSL 1 (best) BASIC39.25■■■■□ 3.87
CUX2O14529 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC39.25■■■■□ 3.87
CUX2O14529 PRORSD1P-201ENST00000295112 541 ntBASIC39.24■■■■□ 3.87
CUX2O14529 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC39.24■■■■□ 3.87
CUX2O14529 PWWP2B-201ENST00000305233 2651 ntAPPRIS P1 TSL 1 (best) BASIC39.24■■■■□ 3.87
CUX2O14529 KCNJ4-201ENST00000303592 2065 ntAPPRIS P1 TSL 1 (best) BASIC39.24■■■■□ 3.87
Retrieved 100 of 98,524 protein–RNA pairs in 22.7 ms