Protein–RNA interactions for Protein: A6NMZ7

COL6A6, Collagen alpha-6(VI) chain, humanhuman

Predictions only

Length 2,263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A6A6NMZ7 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC20.64■□□□□ 0.89
COL6A6A6NMZ7 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
COL6A6A6NMZ7 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
COL6A6A6NMZ7 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC20.64■□□□□ 0.89
COL6A6A6NMZ7 APTR-205ENST00000447009 902 ntTSL 2 BASIC20.64■□□□□ 0.89
COL6A6A6NMZ7 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC20.64■□□□□ 0.89
COL6A6A6NMZ7 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC20.64■□□□□ 0.89
COL6A6A6NMZ7 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC20.64■□□□□ 0.89
COL6A6A6NMZ7 MPST-204ENST00000404393 1329 ntTSL 5 BASIC20.63■□□□□ 0.89
COL6A6A6NMZ7 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
COL6A6A6NMZ7 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC20.63■□□□□ 0.89
COL6A6A6NMZ7 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC20.63■□□□□ 0.89
COL6A6A6NMZ7 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
COL6A6A6NMZ7 GAMT-205ENST00000640762 751 ntTSL 5 BASIC20.63■□□□□ 0.89
COL6A6A6NMZ7 MEX3D-201ENST00000402693 2850 ntAPPRIS P2 TSL 1 (best) BASIC20.63■□□□□ 0.89
COL6A6A6NMZ7 ERN1-208ENST00000606895 2068 ntBASIC20.63■□□□□ 0.89
COL6A6A6NMZ7 ARHGEF7-205ENST00000375739 5375 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
COL6A6A6NMZ7 BID-214ENST00000617586 542 ntTSL 5 BASIC20.62■□□□□ 0.89
COL6A6A6NMZ7 C14orf80-204ENST00000392522 1630 ntAPPRIS P4 TSL 5 BASIC20.62■□□□□ 0.89
COL6A6A6NMZ7 AC096887.2-201ENST00000623443 1957 ntBASIC20.62■□□□□ 0.89
COL6A6A6NMZ7 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC20.62■□□□□ 0.89
COL6A6A6NMZ7 TRIM14-203ENST00000375098 1792 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
COL6A6A6NMZ7 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
COL6A6A6NMZ7 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
COL6A6A6NMZ7 GALNS-213ENST00000569433 723 ntTSL 3 BASIC20.62■□□□□ 0.89
COL6A6A6NMZ7 WWOX-218ENST00000627394 894 ntTSL 5 BASIC20.62■□□□□ 0.89
COL6A6A6NMZ7 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
COL6A6A6NMZ7 KAT8-202ENST00000448516 1789 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
COL6A6A6NMZ7 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC20.61■□□□□ 0.89
COL6A6A6NMZ7 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC20.61■□□□□ 0.89
COL6A6A6NMZ7 HSCB-202ENST00000398941 955 ntTSL 2 BASIC20.61■□□□□ 0.89
COL6A6A6NMZ7 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
COL6A6A6NMZ7 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
COL6A6A6NMZ7 AC008687.6-201ENST00000596318 630 ntBASIC20.61■□□□□ 0.89
COL6A6A6NMZ7 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC20.61■□□□□ 0.89
COL6A6A6NMZ7 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
COL6A6A6NMZ7 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC20.61■□□□□ 0.89
COL6A6A6NMZ7 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC20.61■□□□□ 0.89
COL6A6A6NMZ7 TADA2B-201ENST00000310074 4350 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
COL6A6A6NMZ7 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
COL6A6A6NMZ7 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
COL6A6A6NMZ7 MIR4651-201ENST00000582622 73 ntBASIC20.61■□□□□ 0.89
COL6A6A6NMZ7 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC20.61■□□□□ 0.89
COL6A6A6NMZ7 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
COL6A6A6NMZ7 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
COL6A6A6NMZ7 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC20.6■□□□□ 0.89
COL6A6A6NMZ7 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC20.6■□□□□ 0.89
COL6A6A6NMZ7 COL13A1-213ENST00000520267 2276 ntAPPRIS ALT2 TSL 5 BASIC20.6■□□□□ 0.89
COL6A6A6NMZ7 AC091060.1-201ENST00000623524 1766 ntBASIC20.6■□□□□ 0.89
COL6A6A6NMZ7 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
COL6A6A6NMZ7 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
COL6A6A6NMZ7 FAM149A-201ENST00000227065 2708 ntAPPRIS P2 TSL 1 (best) BASIC20.6■□□□□ 0.89
COL6A6A6NMZ7 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
COL6A6A6NMZ7 NUDT8-202ENST00000376693 728 ntAPPRIS ALT2 TSL 2 BASIC20.6■□□□□ 0.89
COL6A6A6NMZ7 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
COL6A6A6NMZ7 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
COL6A6A6NMZ7 DBI-210ENST00000542275 757 ntTSL 5 BASIC20.6■□□□□ 0.89
COL6A6A6NMZ7 DET1-205ENST00000558413 583 ntTSL 4 BASIC20.6■□□□□ 0.89
COL6A6A6NMZ7 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
COL6A6A6NMZ7 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC20.59■□□□□ 0.89
COL6A6A6NMZ7 SDS-201ENST00000257549 1606 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
COL6A6A6NMZ7 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC20.59■□□□□ 0.89
COL6A6A6NMZ7 AP005435.1-201ENST00000529293 1178 ntBASIC20.59■□□□□ 0.89
COL6A6A6NMZ7 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
COL6A6A6NMZ7 CEND1-201ENST00000330106 1649 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
COL6A6A6NMZ7 SCCPDH-201ENST00000366510 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
COL6A6A6NMZ7 MAPKAPK2-201ENST00000294981 2171 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
COL6A6A6NMZ7 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC20.58■□□□□ 0.89
COL6A6A6NMZ7 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC20.58■□□□□ 0.89
COL6A6A6NMZ7 RHEB-201ENST00000262187 2075 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
COL6A6A6NMZ7 EVA1C-201ENST00000300255 1998 ntAPPRIS P3 TSL 1 (best) BASIC20.58■□□□□ 0.88
COL6A6A6NMZ7 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC20.58■□□□□ 0.88
COL6A6A6NMZ7 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC20.58■□□□□ 0.88
COL6A6A6NMZ7 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC20.58■□□□□ 0.88
COL6A6A6NMZ7 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC20.58■□□□□ 0.88
COL6A6A6NMZ7 PAPD7-201ENST00000230859 5459 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
COL6A6A6NMZ7 HYAL2-202ENST00000395139 2136 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
COL6A6A6NMZ7 ZNF747-203ENST00000568028 1511 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
COL6A6A6NMZ7 SMARCD3-203ENST00000392811 2018 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
COL6A6A6NMZ7 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC20.57■□□□□ 0.88
COL6A6A6NMZ7 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
COL6A6A6NMZ7 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
COL6A6A6NMZ7 TMIE-201ENST00000326431 1824 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
COL6A6A6NMZ7 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC20.56■□□□□ 0.88
COL6A6A6NMZ7 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
COL6A6A6NMZ7 KRT18P6-201ENST00000555540 1265 ntBASIC20.56■□□□□ 0.88
COL6A6A6NMZ7 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC20.56■□□□□ 0.88
COL6A6A6NMZ7 ARHGEF7-206ENST00000375741 5525 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
COL6A6A6NMZ7 RAB3IL1-202ENST00000394836 2284 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
COL6A6A6NMZ7 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
COL6A6A6NMZ7 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
COL6A6A6NMZ7 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC20.56■□□□□ 0.88
COL6A6A6NMZ7 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
COL6A6A6NMZ7 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
COL6A6A6NMZ7 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
COL6A6A6NMZ7 ARL16-209ENST00000573715 763 ntTSL 3 BASIC20.55■□□□□ 0.88
COL6A6A6NMZ7 ARL16-211ENST00000576135 694 ntTSL 3 BASIC20.55■□□□□ 0.88
COL6A6A6NMZ7 pRNA.6-201ENST00000610482 90 ntBASIC20.55■□□□□ 0.88
COL6A6A6NMZ7 pRNA.5-201ENST00000612139 90 ntBASIC20.55■□□□□ 0.88
COL6A6A6NMZ7 pRNA.11-201ENST00000618423 90 ntBASIC20.55■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 18.2 ms